RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 SYNE1Q8NF91 8797 aaKnown RBP2.03□□□□□ -2.08
SMC1A-201ENST00000322213 KRTAP19-7Q3SYF9 63 aa2.02□□□□□ -2.09
SMC1A-201ENST00000322213 KRTAP9-7A8MTY7 169 aa2.01□□□□□ -2.09
SMC1A-201ENST00000322213 KRTAP20-1Q3LI63 56 aa2.01□□□□□ -2.09
SMC1A-201ENST00000322213 BIRC6Q9NR09 4857 aa2□□□□□ -2.09
SMC1A-201ENST00000322213 KRTAP19-6Q3LI70 58 aa1.99□□□□□ -2.09
SMC1A-201ENST00000322213 KRTAP6-2Q3LI66 62 aa1.96□□□□□ -2.1
SMC1A-201ENST00000322213 KRTAP4-3Q9BYR4 195 aa1.96□□□□□ -2.1
SMC1A-201ENST00000322213 KRTAP4-9Q9BYQ8 210 aa1.95□□□□□ -2.1
SMC1A-201ENST00000322213 LCE2AQ5TA79 106 aaPredicted RBP1.93□□□□□ -2.1
SMC1A-201ENST00000322213 RYR2Q92736 4967 aa1.92□□□□□ -2.1
SMC1A-201ENST00000322213 KRTAP6-3Q3LI67 103 aa1.91□□□□□ -2.1
SMC1A-201ENST00000322213 HERC2O95714 4834 aa1.91□□□□□ -2.1
SMC1A-201ENST00000322213 KRTAP2-2Q9BYT5 123 aa1.9□□□□□ -2.1
SMC1A-201ENST00000322213 PCLOQ9Y6V0 5065 aa1.89□□□□□ -2.11
SMC1A-201ENST00000322213 MUC2Q02817 5179 aa1.88□□□□□ -2.11
SMC1A-201ENST00000322213 MT4P47944 62 aa1.87□□□□□ -2.11
SMC1A-201ENST00000322213 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.87□□□□□ -2.11
SMC1A-201ENST00000322213 LCE1AQ5T7P2 110 aa1.85□□□□□ -2.11
SMC1A-201ENST00000322213 KRTAP6-1Q3LI64 71 aa1.85□□□□□ -2.11
SMC1A-201ENST00000322213 LCE5AQ5TCM9 118 aa1.83□□□□□ -2.12
SMC1A-201ENST00000322213 HERC1Q15751 4861 aa1.82□□□□□ -2.12
SMC1A-201ENST00000322213 LCE1DQ5T752 114 aa1.82□□□□□ -2.12
SMC1A-201ENST00000322213 HMCN2Q8NDA2 5059 aa1.82□□□□□ -2.12
SMC1A-201ENST00000322213 LCE4AQ5TA78 99 aa1.81□□□□□ -2.12
SMC1A-201ENST00000322213 KIAA1109Q2LD37 5005 aa1.8□□□□□ -2.12
SMC1A-201ENST00000322213 SYNE2Q8WXH0 6885 aaKnown RBP1.79□□□□□ -2.12
SMC1A-201ENST00000322213 KRTAP9-4Q9BYQ2 154 aa1.78□□□□□ -2.12
SMC1A-201ENST00000322213 LCE1EQ5T753 118 aa1.78□□□□□ -2.12
SMC1A-201ENST00000322213 LCE1BQ5T7P3 118 aa1.78□□□□□ -2.13
SMC1A-201ENST00000322213 KMT2DO14686 5537 aa1.75□□□□□ -2.13
SMC1A-201ENST00000322213 KRTAP5-5Q701N2 237 aaPredicted RBP1.7□□□□□ -2.14
SMC1A-201ENST00000322213 ABCA13Q86UQ4 5058 aa1.67□□□□□ -2.14
SMC1A-201ENST00000322213 EPPK1P58107 5090 aaKnown RBP1.65□□□□□ -2.14
SMC1A-201ENST00000322213 UBR4Q5T4S7 5183 aa1.65□□□□□ -2.15
SMC1A-201ENST00000322213 OBSCNQ5VST9 7968 aa1.64□□□□□ -2.15
SMC1A-201ENST00000322213 FSIP2Q5CZC0 6907 aa1.63□□□□□ -2.15
SMC1A-201ENST00000322213 KRTAP9-9Q9BYP9 154 aa1.63□□□□□ -2.15
SMC1A-201ENST00000322213 RNF213Q63HN8 5207 aa1.6□□□□□ -2.15
SMC1A-201ENST00000322213 KRTAP5-9P26371 169 aa1.57□□□□□ -2.16
SMC1A-201ENST00000322213 LCE1FQ5T754 118 aa1.56□□□□□ -2.16
SMC1A-201ENST00000322213 KRTAP4-11Q9BYQ6 195 aa1.56□□□□□ -2.16
SMC1A-201ENST00000322213 FAT4Q6V0I7 4981 aa1.55□□□□□ -2.16
SMC1A-201ENST00000322213 FCGBPQ9Y6R7 5405 aaPredicted RBP1.51□□□□□ -2.17
SMC1A-201ENST00000322213 LCE1CQ5T751 118 aa1.51□□□□□ -2.17
SMC1A-201ENST00000322213 MACF1Q9UPN3 7388 aaKnown RBP1.49□□□□□ -2.17
SMC1A-201ENST00000322213 USH2AO75445 5202 aa1.46□□□□□ -2.18
SMC1A-201ENST00000322213 NEBP20929 6669 aa1.45□□□□□ -2.18
SMC1A-201ENST00000322213 DSTQ03001 7570 aaKnown RBP1.41□□□□□ -2.18
SMC1A-201ENST00000322213 MUC5BQ9HC84 5762 aaPredicted RBP1.4□□□□□ -2.18
SMC1A-201ENST00000322213 KRTAP5-4Q6L8H1 288 aa1.38□□□□□ -2.19
SMC1A-201ENST00000322213 MUC12Q9UKN1 5478 aa1.37□□□□□ -2.19
SMC1A-201ENST00000322213 KRTAP20-2Q3LI61 65 aa1.36□□□□□ -2.19
SMC1A-201ENST00000322213 SSPOA2VEC9 5147 aa1.36□□□□□ -2.19
SMC1A-201ENST00000322213 KRTAP4-6Q9BYQ5 205 aa1.34□□□□□ -2.19
SMC1A-201ENST00000322213 MDN1Q9NU22 5596 aa1.3□□□□□ -2.2
SMC1A-201ENST00000322213 KRTAP4-4Q9BYR3 166 aa1.27□□□□□ -2.21
SMC1A-201ENST00000322213 KRTAP5-10Q6L8G5 202 aa1.24□□□□□ -2.21
SMC1A-201ENST00000322213 KRTAP5-3Q6L8H2 238 aa1.24□□□□□ -2.21
SMC1A-201ENST00000322213 GPR98Q8WXG9 6306 aa1.23□□□□□ -2.21
SMC1A-201ENST00000322213 MUC19Q7Z5P9 8384 aa1.21□□□□□ -2.22
SMC1A-201ENST00000322213 HMCN1Q96RW7 5635 aa1.18□□□□□ -2.22
SMC1A-201ENST00000322213 KRTAP5-2Q701N4 177 aa1.13□□□□□ -2.23
SMC1A-201ENST00000322213 KRTAP21-1Q3LI58 79 aa1.13□□□□□ -2.23
SMC1A-201ENST00000322213 AHNAKQ09666 5890 aaKnown RBP1.13□□□□□ -2.23
SMC1A-201ENST00000322213 MUC5ACP98088 5654 aa1.12□□□□□ -2.23
SMC1A-201ENST00000322213 KRTAP4-12Q9BQ66 201 aa1.11□□□□□ -2.23
SMC1A-201ENST00000322213 KRTAP4-2Q9BYR5 136 aa1.11□□□□□ -2.23
SMC1A-201ENST00000322213 AHNAK2Q8IVF2 5795 aa1.08□□□□□ -2.24
SMC1A-201ENST00000322213 KRTAP5-8O75690 187 aa1.07□□□□□ -2.24
SMC1A-201ENST00000322213 PHGR1C9JFL3 82 aa1.06□□□□□ -2.24
SMC1A-201ENST00000322213 KRTAP5-1Q6L8H4 278 aa1.05□□□□□ -2.24
SMC1A-201ENST00000322213 KRTAP5-7Q6L8G8 165 aa1.01□□□□□ -2.25
SMC1A-201ENST00000322213 KRTAP21-2Q3LI59 83 aa1.01□□□□□ -2.25
SMC1A-201ENST00000322213 KRTAP5-11Q6L8G4 156 aa0.98□□□□□ -2.25
SMC1A-201ENST00000322213 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.97□□□□□ -2.25
SMC1A-201ENST00000322213 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 99.8 ms