RNA–Protein interactions for RNA: ENST00000320876.10

SMCHD1-201, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCHD1, Length 8,821 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-201ENST00000320876 KRTAP4-9Q9BYQ8 210 aa4.67□□□□□ -1.66
SMCHD1-201ENST00000320876 KMT2CQ8NEZ4 4911 aaKnown RBP4.64□□□□□ -1.67
SMCHD1-201ENST00000320876 KRTAP19-7Q3SYF9 63 aa4.62□□□□□ -1.67
SMCHD1-201ENST00000320876 LCE5AQ5TCM9 118 aa4.62□□□□□ -1.67
SMCHD1-201ENST00000320876 KRTAP6-2Q3LI66 62 aa4.61□□□□□ -1.67
SMCHD1-201ENST00000320876 PCLOQ9Y6V0 5065 aa4.54□□□□□ -1.68
SMCHD1-201ENST00000320876 SYNE2Q8WXH0 6885 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-201ENST00000320876 KRTAP9-2Q9BYQ4 174 aa4.49□□□□□ -1.69
SMCHD1-201ENST00000320876 RYR2Q92736 4967 aa4.45□□□□□ -1.7
SMCHD1-201ENST00000320876 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
SMCHD1-201ENST00000320876 KRTAP9-4Q9BYQ2 154 aa4.39□□□□□ -1.71
SMCHD1-201ENST00000320876 HYDINQ4G0P3 5121 aa4.36□□□□□ -1.71
SMCHD1-201ENST00000320876 HERC2O95714 4834 aa4.35□□□□□ -1.71
SMCHD1-201ENST00000320876 LCE1AQ5T7P2 110 aa4.33□□□□□ -1.72
SMCHD1-201ENST00000320876 KRTAP9-6A8MVA2 160 aa4.33□□□□□ -1.72
SMCHD1-201ENST00000320876 LCE1CQ5T751 118 aa4.33□□□□□ -1.72
SMCHD1-201ENST00000320876 LCE1EQ5T753 118 aa4.33□□□□□ -1.72
SMCHD1-201ENST00000320876 LCE1FQ5T754 118 aa4.33□□□□□ -1.72
SMCHD1-201ENST00000320876 KRTAP9-7A8MTY7 169 aa4.33□□□□□ -1.72
SMCHD1-201ENST00000320876 KRTAP20-1Q3LI63 56 aa4.32□□□□□ -1.72
SMCHD1-201ENST00000320876 BIRC6Q9NR09 4857 aa4.3□□□□□ -1.72
SMCHD1-201ENST00000320876 LCE4AQ5TA78 99 aa4.27□□□□□ -1.73
SMCHD1-201ENST00000320876 LCE2AQ5TA79 106 aaPredicted RBP4.17□□□□□ -1.74
SMCHD1-201ENST00000320876 KRTAP2-2Q9BYT5 123 aa4.15□□□□□ -1.74
SMCHD1-201ENST00000320876 KRTAP9-6A0A140TA67 174 aa4.14□□□□□ -1.75
SMCHD1-201ENST00000320876 KIAA1109Q2LD37 5005 aa4.12□□□□□ -1.75
SMCHD1-201ENST00000320876 HERC1Q15751 4861 aa4.09□□□□□ -1.75
SMCHD1-201ENST00000320876 KRTAP6-3Q3LI67 103 aa4.09□□□□□ -1.76
SMCHD1-201ENST00000320876 HMCN2Q8NDA2 5059 aa4.05□□□□□ -1.76
SMCHD1-201ENST00000320876 KRTAP9-9Q9BYP9 154 aa3.88□□□□□ -1.79
SMCHD1-201ENST00000320876 SYNE1Q8NF91 8797 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-201ENST00000320876 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-201ENST00000320876 EPPK1P58107 5090 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-201ENST00000320876 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
SMCHD1-201ENST00000320876 FSIP2Q5CZC0 6907 aa3.81□□□□□ -1.8
SMCHD1-201ENST00000320876 RNF213Q63HN8 5207 aa3.75□□□□□ -1.81
SMCHD1-201ENST00000320876 MUC2Q02817 5179 aa3.73□□□□□ -1.81
SMCHD1-201ENST00000320876 UBR4Q5T4S7 5183 aa3.65□□□□□ -1.82
SMCHD1-201ENST00000320876 ABCA13Q86UQ4 5058 aa3.59□□□□□ -1.83
SMCHD1-201ENST00000320876 FAT4Q6V0I7 4981 aa3.57□□□□□ -1.84
SMCHD1-201ENST00000320876 KRTAP20-2Q3LI61 65 aa3.48□□□□□ -1.85
SMCHD1-201ENST00000320876 KMT2DO14686 5537 aa3.46□□□□□ -1.86
SMCHD1-201ENST00000320876 OBSCNQ5VST9 7968 aa3.44□□□□□ -1.86
SMCHD1-201ENST00000320876 KRTAP4-6Q9BYQ5 205 aa3.43□□□□□ -1.86
SMCHD1-201ENST00000320876 KRTAP5-9P26371 169 aa3.41□□□□□ -1.86
SMCHD1-201ENST00000320876 KRTAP4-4Q9BYR3 166 aa3.37□□□□□ -1.87
SMCHD1-201ENST00000320876 KRTAP5-5Q701N2 237 aaPredicted RBP3.31□□□□□ -1.88
SMCHD1-201ENST00000320876 KRTAP4-12Q9BQ66 201 aa3.23□□□□□ -1.89
SMCHD1-201ENST00000320876 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
SMCHD1-201ENST00000320876 FCGBPQ9Y6R7 5405 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-201ENST00000320876 KRTAP5-4Q6L8H1 288 aa3.21□□□□□ -1.9
SMCHD1-201ENST00000320876 NEBP20929 6669 aa3.21□□□□□ -1.9
SMCHD1-201ENST00000320876 DSTQ03001 7570 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-201ENST00000320876 USH2AO75445 5202 aa3.08□□□□□ -1.92
SMCHD1-201ENST00000320876 MACF1Q9UPN3 7388 aaKnown RBP2.92□□□□□ -1.94
SMCHD1-201ENST00000320876 MDN1Q9NU22 5596 aa2.9□□□□□ -1.94
SMCHD1-201ENST00000320876 SSPOA2VEC9 5147 aa2.9□□□□□ -1.95
SMCHD1-201ENST00000320876 MUC12Q9UKN1 5478 aa2.77□□□□□ -1.97
SMCHD1-201ENST00000320876 KRTAP5-3Q6L8H2 238 aa2.77□□□□□ -1.97
SMCHD1-201ENST00000320876 MUC19Q7Z5P9 8384 aa2.66□□□□□ -1.98
SMCHD1-201ENST00000320876 KRTAP5-10Q6L8G5 202 aa2.64□□□□□ -1.99
SMCHD1-201ENST00000320876 MUC5ACP98088 5654 aa2.6□□□□□ -1.99
SMCHD1-201ENST00000320876 MUC5BQ9HC84 5762 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-201ENST00000320876 PHGR1C9JFL3 82 aa2.42□□□□□ -2.02
SMCHD1-201ENST00000320876 KRTAP5-2Q701N4 177 aa2.4□□□□□ -2.03
SMCHD1-201ENST00000320876 GPR98Q8WXG9 6306 aa2.39□□□□□ -2.03
SMCHD1-201ENST00000320876 KRTAP5-8O75690 187 aa2.38□□□□□ -2.03
SMCHD1-201ENST00000320876 HMCN1Q96RW7 5635 aa2.34□□□□□ -2.03
SMCHD1-201ENST00000320876 KRTAP5-1Q6L8H4 278 aa2.27□□□□□ -2.05
SMCHD1-201ENST00000320876 KRTAP5-11Q6L8G4 156 aa2.27□□□□□ -2.05
SMCHD1-201ENST00000320876 KRTAP21-1Q3LI58 79 aa2.16□□□□□ -2.06
SMCHD1-201ENST00000320876 KRTAP21-2Q3LI59 83 aa2.13□□□□□ -2.07
SMCHD1-201ENST00000320876 AHNAK2Q8IVF2 5795 aa2.02□□□□□ -2.09
SMCHD1-201ENST00000320876 AHNAKQ09666 5890 aaKnown RBP2.01□□□□□ -2.09
SMCHD1-201ENST00000320876 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.96□□□□□ -2.1
SMCHD1-201ENST00000320876 KRTAP5-7Q6L8G8 165 aa1.62□□□□□ -2.15
SMCHD1-201ENST00000320876 MUC16Q8WXI7 14507 aa1.57□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 6.9 ms