RNA–Protein interactions for RNA: ENST00000315285.7

SPAST-201, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,117 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-201ENST00000315285 MT1MQ8N339 61 aa4.35□□□□□ -1.71
SPAST-201ENST00000315285 KRTAP19-6Q3LI70 58 aa4.33□□□□□ -1.72
SPAST-201ENST00000315285 SYNE1Q8NF91 8797 aaKnown RBP4.3□□□□□ -1.72
SPAST-201ENST00000315285 KRTAP19-7Q3SYF9 63 aa4.28□□□□□ -1.72
SPAST-201ENST00000315285 LOC100996750A0A140TA64 210 aa4.28□□□□□ -1.72
SPAST-201ENST00000315285 FSIP2Q5CZC0 6907 aa4.26□□□□□ -1.73
SPAST-201ENST00000315285 KRTAP4-3Q9BYR4 195 aa4.26□□□□□ -1.73
SPAST-201ENST00000315285 LCE2AQ5TA79 106 aaPredicted RBP4.25□□□□□ -1.73
SPAST-201ENST00000315285 MUC2Q02817 5179 aa4.14□□□□□ -1.75
SPAST-201ENST00000315285 MT3P25713 68 aa4.12□□□□□ -1.75
SPAST-201ENST00000315285 KRTAP2-3P0C7H8 128 aa4.11□□□□□ -1.75
SPAST-201ENST00000315285 KRTAP2-4Q9BYR9 128 aa4.11□□□□□ -1.75
SPAST-201ENST00000315285 KRTAP2-1Q9BYU5 128 aa4.11□□□□□ -1.75
SPAST-201ENST00000315285 LCE2DQ5TA82 110 aaPredicted RBP4.08□□□□□ -1.76
SPAST-201ENST00000315285 PRM1P04553 51 aa4.07□□□□□ -1.76
SPAST-201ENST00000315285 OBSCNQ5VST9 7968 aa4.07□□□□□ -1.76
SPAST-201ENST00000315285 KRTAP9-2Q9BYQ4 174 aa4.04□□□□□ -1.76
SPAST-201ENST00000315285 MT1AP04731 61 aa4.03□□□□□ -1.77
SPAST-201ENST00000315285 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
SPAST-201ENST00000315285 MT4P47944 62 aa3.98□□□□□ -1.77
SPAST-201ENST00000315285 KRTAP4-9Q9BYQ8 210 aa3.97□□□□□ -1.77
SPAST-201ENST00000315285 KRTAP9-6A0A140TA67 174 aa3.97□□□□□ -1.77
SPAST-201ENST00000315285 SYNE2Q8WXH0 6885 aaKnown RBP3.87□□□□□ -1.79
SPAST-201ENST00000315285 LCE1DQ5T752 114 aa3.83□□□□□ -1.8
SPAST-201ENST00000315285 LCE5AQ5TCM9 118 aa3.83□□□□□ -1.8
SPAST-201ENST00000315285 KRTAP6-1Q3LI64 71 aa3.83□□□□□ -1.8
SPAST-201ENST00000315285 LCE1BQ5T7P3 118 aa3.82□□□□□ -1.8
SPAST-201ENST00000315285 LCE1AQ5T7P2 110 aa3.78□□□□□ -1.8
SPAST-201ENST00000315285 FCGBPQ9Y6R7 5405 aaPredicted RBP3.77□□□□□ -1.81
SPAST-201ENST00000315285 USH2AO75445 5202 aa3.76□□□□□ -1.81
SPAST-201ENST00000315285 KRTAP6-2Q3LI66 62 aa3.7□□□□□ -1.82
SPAST-201ENST00000315285 KRTAP9-4Q9BYQ2 154 aa3.7□□□□□ -1.82
SPAST-201ENST00000315285 KRTAP9-7A8MTY7 169 aa3.68□□□□□ -1.82
SPAST-201ENST00000315285 KRTAP6-3Q3LI67 103 aa3.65□□□□□ -1.82
SPAST-201ENST00000315285 KMT2DO14686 5537 aa3.65□□□□□ -1.82
SPAST-201ENST00000315285 DSTQ03001 7570 aaKnown RBP3.64□□□□□ -1.83
SPAST-201ENST00000315285 KRTAP20-1Q3LI63 56 aa3.63□□□□□ -1.83
SPAST-201ENST00000315285 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.54□□□□□ -1.84
SPAST-201ENST00000315285 LCE4AQ5TA78 99 aa3.5□□□□□ -1.85
SPAST-201ENST00000315285 MACF1Q9UPN3 7388 aaKnown RBP3.43□□□□□ -1.86
SPAST-201ENST00000315285 MUC12Q9UKN1 5478 aa3.42□□□□□ -1.86
SPAST-201ENST00000315285 SSPOA2VEC9 5147 aa3.41□□□□□ -1.86
SPAST-201ENST00000315285 KRTAP2-2Q9BYT5 123 aa3.39□□□□□ -1.87
SPAST-201ENST00000315285 GPR98Q8WXG9 6306 aa3.34□□□□□ -1.87
SPAST-201ENST00000315285 KRTAP5-9P26371 169 aa3.31□□□□□ -1.88
SPAST-201ENST00000315285 MDN1Q9NU22 5596 aa3.14□□□□□ -1.91
SPAST-201ENST00000315285 MUC19Q7Z5P9 8384 aa3.13□□□□□ -1.91
SPAST-201ENST00000315285 NEBP20929 6669 aa3.13□□□□□ -1.91
SPAST-201ENST00000315285 KRTAP4-6Q9BYQ5 205 aa3.12□□□□□ -1.91
SPAST-201ENST00000315285 LCE1CQ5T751 118 aa3.12□□□□□ -1.91
SPAST-201ENST00000315285 LCE1EQ5T753 118 aa3.12□□□□□ -1.91
SPAST-201ENST00000315285 LCE1FQ5T754 118 aa3.12□□□□□ -1.91
SPAST-201ENST00000315285 KRTAP20-2Q3LI61 65 aa3.07□□□□□ -1.92
SPAST-201ENST00000315285 KRTAP4-11Q9BYQ6 195 aa3.01□□□□□ -1.93
SPAST-201ENST00000315285 KRTAP5-5Q701N2 237 aaPredicted RBP3□□□□□ -1.93
SPAST-201ENST00000315285 KRTAP9-9Q9BYP9 154 aa2.92□□□□□ -1.94
SPAST-201ENST00000315285 KRTAP5-4Q6L8H1 288 aa2.82□□□□□ -1.96
SPAST-201ENST00000315285 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
SPAST-201ENST00000315285 MUC5ACP98088 5654 aa2.67□□□□□ -1.98
SPAST-201ENST00000315285 KRTAP4-12Q9BQ66 201 aa2.66□□□□□ -1.98
SPAST-201ENST00000315285 KRTAP4-2Q9BYR5 136 aa2.66□□□□□ -1.98
SPAST-201ENST00000315285 HMCN1Q96RW7 5635 aa2.54□□□□□ -2
SPAST-201ENST00000315285 KRTAP5-3Q6L8H2 238 aa2.47□□□□□ -2.01
SPAST-201ENST00000315285 AHNAK2Q8IVF2 5795 aa2.43□□□□□ -2.02
SPAST-201ENST00000315285 KRTAP5-10Q6L8G5 202 aa2.38□□□□□ -2.03
SPAST-201ENST00000315285 KRTAP5-2Q701N4 177 aa2.38□□□□□ -2.03
SPAST-201ENST00000315285 KRTAP5-8O75690 187 aa2.26□□□□□ -2.05
SPAST-201ENST00000315285 MUC5BQ9HC84 5762 aaPredicted RBP2.12□□□□□ -2.07
SPAST-201ENST00000315285 KRTAP5-11Q6L8G4 156 aa2.07□□□□□ -2.08
SPAST-201ENST00000315285 KRTAP5-1Q6L8H4 278 aa2.07□□□□□ -2.08
SPAST-201ENST00000315285 KRTAP21-2Q3LI59 83 aa2.04□□□□□ -2.08
SPAST-201ENST00000315285 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
SPAST-201ENST00000315285 PHGR1C9JFL3 82 aa1.98□□□□□ -2.09
SPAST-201ENST00000315285 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.91□□□□□ -2.1
SPAST-201ENST00000315285 KRTAP21-1Q3LI58 79 aa1.86□□□□□ -2.11
SPAST-201ENST00000315285 KRTAP5-7Q6L8G8 165 aa1.8□□□□□ -2.12
SPAST-201ENST00000315285 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 100.7 ms