RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 KRTAP19-7Q3SYF9 63 aa3.87□□□□□ -1.79
COL3A1-201ENST00000304636 MT3P25713 68 aa3.85□□□□□ -1.79
COL3A1-201ENST00000304636 KRTAP19-6Q3LI70 58 aa3.84□□□□□ -1.79
COL3A1-201ENST00000304636 KRTAP4-3Q9BYR4 195 aa3.84□□□□□ -1.79
COL3A1-201ENST00000304636 ABCA13Q86UQ4 5058 aa3.83□□□□□ -1.8
COL3A1-201ENST00000304636 LCE2DQ5TA82 110 aaPredicted RBP3.76□□□□□ -1.81
COL3A1-201ENST00000304636 HMCN2Q8NDA2 5059 aa3.76□□□□□ -1.81
COL3A1-201ENST00000304636 SYNE1Q8NF91 8797 aaKnown RBP3.75□□□□□ -1.81
COL3A1-201ENST00000304636 EPPK1P58107 5090 aaKnown RBP3.74□□□□□ -1.81
COL3A1-201ENST00000304636 MT1AP04731 61 aa3.72□□□□□ -1.81
COL3A1-201ENST00000304636 LCE1BQ5T7P3 118 aa3.7□□□□□ -1.82
COL3A1-201ENST00000304636 FAT4Q6V0I7 4981 aa3.7□□□□□ -1.82
COL3A1-201ENST00000304636 KRTAP9-6A8MVA2 160 aa3.68□□□□□ -1.82
COL3A1-201ENST00000304636 RNF213Q63HN8 5207 aa3.68□□□□□ -1.82
COL3A1-201ENST00000304636 MT4P47944 62 aa3.67□□□□□ -1.82
COL3A1-201ENST00000304636 KRTAP4-9Q9BYQ8 210 aa3.66□□□□□ -1.82
COL3A1-201ENST00000304636 UBR4Q5T4S7 5183 aa3.66□□□□□ -1.82
COL3A1-201ENST00000304636 LCE1DQ5T752 114 aa3.65□□□□□ -1.83
COL3A1-201ENST00000304636 LCE2AQ5TA79 106 aaPredicted RBP3.63□□□□□ -1.83
COL3A1-201ENST00000304636 FSIP2Q5CZC0 6907 aa3.59□□□□□ -1.83
COL3A1-201ENST00000304636 KRTAP9-2Q9BYQ4 174 aa3.57□□□□□ -1.84
COL3A1-201ENST00000304636 KRTAP9-6A0A140TA67 174 aa3.56□□□□□ -1.84
COL3A1-201ENST00000304636 KRTAP6-1Q3LI64 71 aa3.5□□□□□ -1.85
COL3A1-201ENST00000304636 KRTAP6-2Q3LI66 62 aa3.48□□□□□ -1.85
COL3A1-201ENST00000304636 LCE5AQ5TCM9 118 aa3.44□□□□□ -1.86
COL3A1-201ENST00000304636 KRTAP20-1Q3LI63 56 aa3.43□□□□□ -1.86
COL3A1-201ENST00000304636 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
COL3A1-201ENST00000304636 MUC2Q02817 5179 aa3.41□□□□□ -1.86
COL3A1-201ENST00000304636 KRTAP9-7A8MTY7 169 aa3.39□□□□□ -1.87
COL3A1-201ENST00000304636 LCE1AQ5T7P2 110 aa3.39□□□□□ -1.87
COL3A1-201ENST00000304636 OBSCNQ5VST9 7968 aa3.37□□□□□ -1.87
COL3A1-201ENST00000304636 SYNE2Q8WXH0 6885 aaKnown RBP3.32□□□□□ -1.88
COL3A1-201ENST00000304636 KRTAP6-3Q3LI67 103 aa3.23□□□□□ -1.89
COL3A1-201ENST00000304636 LCE4AQ5TA78 99 aa3.17□□□□□ -1.9
COL3A1-201ENST00000304636 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
COL3A1-201ENST00000304636 LCE1EQ5T753 118 aa3.16□□□□□ -1.9
COL3A1-201ENST00000304636 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
COL3A1-201ENST00000304636 KRTAP2-2Q9BYT5 123 aa3.16□□□□□ -1.9
COL3A1-201ENST00000304636 FCGBPQ9Y6R7 5405 aaPredicted RBP3.13□□□□□ -1.91
COL3A1-201ENST00000304636 USH2AO75445 5202 aa3.12□□□□□ -1.91
COL3A1-201ENST00000304636 KMT2DO14686 5537 aa3.07□□□□□ -1.92
COL3A1-201ENST00000304636 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.07□□□□□ -1.92
COL3A1-201ENST00000304636 DSTQ03001 7570 aaKnown RBP2.94□□□□□ -1.94
COL3A1-201ENST00000304636 SSPOA2VEC9 5147 aa2.88□□□□□ -1.95
COL3A1-201ENST00000304636 KRTAP4-11Q9BYQ6 195 aa2.88□□□□□ -1.95
COL3A1-201ENST00000304636 KRTAP5-9P26371 169 aa2.86□□□□□ -1.95
COL3A1-201ENST00000304636 MUC19Q7Z5P9 8384 aa2.84□□□□□ -1.95
COL3A1-201ENST00000304636 MACF1Q9UPN3 7388 aaKnown RBP2.84□□□□□ -1.96
COL3A1-201ENST00000304636 KRTAP5-5Q701N2 237 aaPredicted RBP2.82□□□□□ -1.96
COL3A1-201ENST00000304636 KRTAP9-9Q9BYP9 154 aa2.81□□□□□ -1.96
COL3A1-201ENST00000304636 MUC12Q9UKN1 5478 aa2.77□□□□□ -1.97
COL3A1-201ENST00000304636 KRTAP4-6Q9BYQ5 205 aa2.73□□□□□ -1.97
COL3A1-201ENST00000304636 KRTAP20-2Q3LI61 65 aa2.72□□□□□ -1.97
COL3A1-201ENST00000304636 NEBP20929 6669 aa2.71□□□□□ -1.98
COL3A1-201ENST00000304636 GPR98Q8WXG9 6306 aa2.68□□□□□ -1.98
COL3A1-201ENST00000304636 MDN1Q9NU22 5596 aa2.6□□□□□ -1.99
COL3A1-201ENST00000304636 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
COL3A1-201ENST00000304636 KRTAP5-4Q6L8H1 288 aa2.51□□□□□ -2.01
COL3A1-201ENST00000304636 KRTAP4-12Q9BQ66 201 aa2.47□□□□□ -2.01
COL3A1-201ENST00000304636 KRTAP4-2Q9BYR5 136 aa2.47□□□□□ -2.01
COL3A1-201ENST00000304636 MUC5ACP98088 5654 aa2.2□□□□□ -2.06
COL3A1-201ENST00000304636 KRTAP5-10Q6L8G5 202 aa2.2□□□□□ -2.06
COL3A1-201ENST00000304636 KRTAP5-3Q6L8H2 238 aa2.18□□□□□ -2.06
COL3A1-201ENST00000304636 AHNAK2Q8IVF2 5795 aa2.14□□□□□ -2.07
COL3A1-201ENST00000304636 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
COL3A1-201ENST00000304636 HMCN1Q96RW7 5635 aa2.07□□□□□ -2.08
COL3A1-201ENST00000304636 KRTAP5-8O75690 187 aa1.93□□□□□ -2.1
COL3A1-201ENST00000304636 KRTAP5-1Q6L8H4 278 aa1.88□□□□□ -2.11
COL3A1-201ENST00000304636 KRTAP5-11Q6L8G4 156 aa1.86□□□□□ -2.11
COL3A1-201ENST00000304636 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
COL3A1-201ENST00000304636 MUC5BQ9HC84 5762 aaPredicted RBP1.85□□□□□ -2.11
COL3A1-201ENST00000304636 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.12
COL3A1-201ENST00000304636 KRTAP21-1Q3LI58 79 aa1.83□□□□□ -2.12
COL3A1-201ENST00000304636 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.72□□□□□ -2.13
COL3A1-201ENST00000304636 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
COL3A1-201ENST00000304636 KRTAP5-7Q6L8G8 165 aa1.5□□□□□ -2.17
COL3A1-201ENST00000304636 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 38 ms