RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 HMCN2Q8NDA2 5059 aa1.65□□□□□ -2.15
SCN1A-201ENST00000303395 PKHD1L1Q86WI1 4243 aa1.64□□□□□ -2.15
SCN1A-201ENST00000303395 KRTAP19-6Q3LI70 58 aa1.64□□□□□ -2.15
SCN1A-201ENST00000303395 KIAA1109Q2LD37 5005 aa1.63□□□□□ -2.15
SCN1A-201ENST00000303395 LCE1AQ5T7P2 110 aa1.63□□□□□ -2.15
SCN1A-201ENST00000303395 LCE2AQ5TA79 106 aaPredicted RBP1.63□□□□□ -2.15
SCN1A-201ENST00000303395 PRM1P04553 51 aa1.63□□□□□ -2.15
SCN1A-201ENST00000303395 LCE5AQ5TCM9 118 aa1.61□□□□□ -2.15
SCN1A-201ENST00000303395 HERC2O95714 4834 aa1.61□□□□□ -2.15
SCN1A-201ENST00000303395 TNXBP22105 4242 aa1.61□□□□□ -2.15
SCN1A-201ENST00000303395 LCE1CQ5T751 118 aa1.6□□□□□ -2.15
SCN1A-201ENST00000303395 LCE1EQ5T753 118 aa1.6□□□□□ -2.15
SCN1A-201ENST00000303395 LCE1FQ5T754 118 aa1.6□□□□□ -2.15
SCN1A-201ENST00000303395 FAT4Q6V0I7 4981 aa1.56□□□□□ -2.16
SCN1A-201ENST00000303395 KRTAP19-7Q3SYF9 63 aa1.56□□□□□ -2.16
SCN1A-201ENST00000303395 MUC2Q02817 5179 aa1.52□□□□□ -2.17
SCN1A-201ENST00000303395 USH2AO75445 5202 aa1.52□□□□□ -2.17
SCN1A-201ENST00000303395 KRTAP20-1Q3LI63 56 aa1.51□□□□□ -2.17
SCN1A-201ENST00000303395 SSPOA2VEC9 5147 aa1.49□□□□□ -2.17
SCN1A-201ENST00000303395 KRTAP4-8A0A0G2JLE6 195 aa1.46□□□□□ -2.18
SCN1A-201ENST00000303395 KRTAP4-8Q9BYQ9 185 aa1.46□□□□□ -2.18
SCN1A-201ENST00000303395 LCE4AQ5TA78 99 aa1.45□□□□□ -2.18
SCN1A-201ENST00000303395 MUC12Q9UKN1 5478 aa1.45□□□□□ -2.18
SCN1A-201ENST00000303395 LPAP08519 4548 aa1.44□□□□□ -2.18
SCN1A-201ENST00000303395 KRTAP9-9Q9BYP9 154 aa1.41□□□□□ -2.18
SCN1A-201ENST00000303395 KRTAP9-4Q9BYQ2 154 aa1.4□□□□□ -2.18
SCN1A-201ENST00000303395 KRTAP9-2Q9BYQ4 174 aa1.39□□□□□ -2.19
SCN1A-201ENST00000303395 KRTAP9-6A8MVA2 160 aa1.37□□□□□ -2.19
SCN1A-201ENST00000303395 KMT2DO14686 5537 aa1.37□□□□□ -2.19
SCN1A-201ENST00000303395 KRTAP9-6A0A140TA67 174 aa1.36□□□□□ -2.19
SCN1A-201ENST00000303395 SYNE2Q8WXH0 6885 aaKnown RBP1.35□□□□□ -2.19
SCN1A-201ENST00000303395 KRTAP6-3Q3LI67 103 aa1.35□□□□□ -2.19
SCN1A-201ENST00000303395 KRTAP2-2Q9BYT5 123 aa1.34□□□□□ -2.19
SCN1A-201ENST00000303395 SYNE1Q8NF91 8797 aaKnown RBP1.34□□□□□ -2.19
SCN1A-201ENST00000303395 KRTAP4-7Q9BYR0 210 aa1.34□□□□□ -2.19
SCN1A-201ENST00000303395 LOC100996750A0A140TA64 210 aa1.34□□□□□ -2.19
SCN1A-201ENST00000303395 OBSCNQ5VST9 7968 aa1.34□□□□□ -2.2
SCN1A-201ENST00000303395 KRTAP6-2Q3LI66 62 aa1.34□□□□□ -2.2
SCN1A-201ENST00000303395 KRTAP9-7A8MTY7 169 aa1.31□□□□□ -2.2
SCN1A-201ENST00000303395 KRTAP5-2Q701N4 177 aa1.31□□□□□ -2.2
SCN1A-201ENST00000303395 MDN1Q9NU22 5596 aa1.31□□□□□ -2.2
SCN1A-201ENST00000303395 KRTAP5-9P26371 169 aa1.31□□□□□ -2.2
SCN1A-201ENST00000303395 KRTAP6-1Q3LI64 71 aa1.27□□□□□ -2.21
SCN1A-201ENST00000303395 KRTAP4-9Q9BYQ8 210 aa1.27□□□□□ -2.21
SCN1A-201ENST00000303395 KRTAP4-3Q9BYR4 195 aa1.26□□□□□ -2.21
SCN1A-201ENST00000303395 KRTAP20-2Q3LI61 65 aa1.23□□□□□ -2.21
SCN1A-201ENST00000303395 AHNAK2Q8IVF2 5795 aa1.23□□□□□ -2.21
SCN1A-201ENST00000303395 NEBP20929 6669 aa1.22□□□□□ -2.21
SCN1A-201ENST00000303395 GPR98Q8WXG9 6306 aa1.2□□□□□ -2.22
SCN1A-201ENST00000303395 KRTAP5-5Q701N2 237 aaPredicted RBP1.16□□□□□ -2.22
SCN1A-201ENST00000303395 FSIP2Q5CZC0 6907 aa1.16□□□□□ -2.22
SCN1A-201ENST00000303395 FCGBPQ9Y6R7 5405 aaPredicted RBP1.15□□□□□ -2.23
SCN1A-201ENST00000303395 HMCN1Q96RW7 5635 aa1.14□□□□□ -2.23
SCN1A-201ENST00000303395 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.14□□□□□ -2.23
SCN1A-201ENST00000303395 KRTAP4-11Q9BYQ6 195 aa1.14□□□□□ -2.23
SCN1A-201ENST00000303395 KRTAP5-4Q6L8H1 288 aa1.13□□□□□ -2.23
SCN1A-201ENST00000303395 AHNAKQ09666 5890 aaKnown RBP1.09□□□□□ -2.23
SCN1A-201ENST00000303395 MUC5BQ9HC84 5762 aaPredicted RBP1.08□□□□□ -2.24
SCN1A-201ENST00000303395 MUC5ACP98088 5654 aa1.07□□□□□ -2.24
SCN1A-201ENST00000303395 KRTAP4-4Q9BYR3 166 aa1.04□□□□□ -2.24
SCN1A-201ENST00000303395 KRTAP4-12Q9BQ66 201 aa1.03□□□□□ -2.24
SCN1A-201ENST00000303395 KRTAP4-6Q9BYQ5 205 aa1.01□□□□□ -2.25
SCN1A-201ENST00000303395 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.01□□□□□ -2.25
SCN1A-201ENST00000303395 KRTAP4-2Q9BYR5 136 aa1.01□□□□□ -2.25
SCN1A-201ENST00000303395 KRTAP5-3Q6L8H2 238 aa1□□□□□ -2.25
SCN1A-201ENST00000303395 KRTAP5-8O75690 187 aa0.98□□□□□ -2.25
SCN1A-201ENST00000303395 KRTAP5-10Q6L8G5 202 aa0.97□□□□□ -2.25
SCN1A-201ENST00000303395 MACF1Q9UPN3 7388 aaKnown RBP0.96□□□□□ -2.26
SCN1A-201ENST00000303395 KRTAP5-11Q6L8G4 156 aa0.94□□□□□ -2.26
SCN1A-201ENST00000303395 DSTQ03001 7570 aaKnown RBP0.94□□□□□ -2.26
SCN1A-201ENST00000303395 MUC19Q7Z5P9 8384 aa0.92□□□□□ -2.26
SCN1A-201ENST00000303395 KRTAP5-1Q6L8H4 278 aa0.91□□□□□ -2.26
SCN1A-201ENST00000303395 PHGR1C9JFL3 82 aa0.9□□□□□ -2.27
SCN1A-201ENST00000303395 KRTAP21-1Q3LI58 79 aa0.89□□□□□ -2.27
SCN1A-201ENST00000303395 KRTAP5-7Q6L8G8 165 aa0.87□□□□□ -2.27
SCN1A-201ENST00000303395 KRTAP21-2Q3LI59 83 aa0.78□□□□□ -2.28
SCN1A-201ENST00000303395 MUC16Q8WXI7 14507 aa0.59□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 11.9 ms