RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 RNF213Q63HN8 5207 aa5.96□□□□□ -1.46
PCDH1-201ENST00000287008 FLGP20930 4061 aaPredicted RBP5.96□□□□□ -1.46
PCDH1-201ENST00000287008 LCE3EQ5T5B0 92 aa5.95□□□□□ -1.46
PCDH1-201ENST00000287008 FAT4Q6V0I7 4981 aa5.93□□□□□ -1.46
PCDH1-201ENST00000287008 MT1MQ8N339 61 aa5.92□□□□□ -1.46
PCDH1-201ENST00000287008 KRTAP9-6A0A140TA67 174 aa5.85□□□□□ -1.47
PCDH1-201ENST00000287008 TNXBP22105 4242 aa5.84□□□□□ -1.47
PCDH1-201ENST00000287008 MUC2Q02817 5179 aa5.82□□□□□ -1.48
PCDH1-201ENST00000287008 MT4P47944 62 aa5.81□□□□□ -1.48
PCDH1-201ENST00000287008 MT3P25713 68 aa5.8□□□□□ -1.48
PCDH1-201ENST00000287008 KRTAP4-3Q9BYR4 195 aa5.67□□□□□ -1.5
PCDH1-201ENST00000287008 HMCN2Q8NDA2 5059 aa5.67□□□□□ -1.5
PCDH1-201ENST00000287008 KRTAP19-7Q3SYF9 63 aa5.66□□□□□ -1.5
PCDH1-201ENST00000287008 LOC100996750A0A140TA64 210 aa5.63□□□□□ -1.51
PCDH1-201ENST00000287008 OBSCNQ5VST9 7968 aa5.61□□□□□ -1.51
PCDH1-201ENST00000287008 KRTAP9-7A8MTY7 169 aa5.55□□□□□ -1.52
PCDH1-201ENST00000287008 SYNE2Q8WXH0 6885 aaKnown RBP5.54□□□□□ -1.52
PCDH1-201ENST00000287008 MT1AP04731 61 aa5.5□□□□□ -1.53
PCDH1-201ENST00000287008 LCE1DQ5T752 114 aa5.49□□□□□ -1.53
PCDH1-201ENST00000287008 LCE1BQ5T7P3 118 aa5.49□□□□□ -1.53
PCDH1-201ENST00000287008 LCE1AQ5T7P2 110 aa5.47□□□□□ -1.53
PCDH1-201ENST00000287008 KRTAP20-1Q3LI63 56 aa5.47□□□□□ -1.53
PCDH1-201ENST00000287008 KRTAP6-3Q3LI67 103 aa5.45□□□□□ -1.54
PCDH1-201ENST00000287008 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.33□□□□□ -1.56
PCDH1-201ENST00000287008 PRM1P04553 51 aa5.3□□□□□ -1.56
PCDH1-201ENST00000287008 KRTAP2-3P0C7H8 128 aa5.3□□□□□ -1.56
PCDH1-201ENST00000287008 KRTAP2-4Q9BYR9 128 aa5.3□□□□□ -1.56
PCDH1-201ENST00000287008 KRTAP2-1Q9BYU5 128 aa5.3□□□□□ -1.56
PCDH1-201ENST00000287008 DSTQ03001 7570 aaKnown RBP5.22□□□□□ -1.57
PCDH1-201ENST00000287008 LCE5AQ5TCM9 118 aa5.21□□□□□ -1.58
PCDH1-201ENST00000287008 KRTAP4-9Q9BYQ8 210 aa5.18□□□□□ -1.58
PCDH1-201ENST00000287008 MACF1Q9UPN3 7388 aaKnown RBP5.17□□□□□ -1.58
PCDH1-201ENST00000287008 KRTAP2-2Q9BYT5 123 aa5.16□□□□□ -1.58
PCDH1-201ENST00000287008 USH2AO75445 5202 aa5.16□□□□□ -1.58
PCDH1-201ENST00000287008 FCGBPQ9Y6R7 5405 aaPredicted RBP5.15□□□□□ -1.59
PCDH1-201ENST00000287008 LCE4AQ5TA78 99 aa5.14□□□□□ -1.59
PCDH1-201ENST00000287008 KRTAP6-1Q3LI64 71 aa5.1□□□□□ -1.59
PCDH1-201ENST00000287008 KRTAP6-2Q3LI66 62 aa5.07□□□□□ -1.6
PCDH1-201ENST00000287008 KMT2DO14686 5537 aa5.04□□□□□ -1.6
PCDH1-201ENST00000287008 KRTAP9-6A8MVA2 160 aa5.01□□□□□ -1.61
PCDH1-201ENST00000287008 KRTAP9-4Q9BYQ2 154 aa5.01□□□□□ -1.61
PCDH1-201ENST00000287008 MDN1Q9NU22 5596 aa4.78□□□□□ -1.64
PCDH1-201ENST00000287008 GPR98Q8WXG9 6306 aa4.73□□□□□ -1.65
PCDH1-201ENST00000287008 NEBP20929 6669 aa4.69□□□□□ -1.66
PCDH1-201ENST00000287008 LCE1CQ5T751 118 aa4.66□□□□□ -1.66
PCDH1-201ENST00000287008 LCE1EQ5T753 118 aa4.66□□□□□ -1.66
PCDH1-201ENST00000287008 LCE1FQ5T754 118 aa4.66□□□□□ -1.66
PCDH1-201ENST00000287008 MUC19Q7Z5P9 8384 aa4.65□□□□□ -1.67
PCDH1-201ENST00000287008 KRTAP5-9P26371 169 aa4.65□□□□□ -1.67
PCDH1-201ENST00000287008 MUC12Q9UKN1 5478 aa4.53□□□□□ -1.68
PCDH1-201ENST00000287008 SSPOA2VEC9 5147 aa4.52□□□□□ -1.69
PCDH1-201ENST00000287008 KRTAP9-9Q9BYP9 154 aa4.47□□□□□ -1.69
PCDH1-201ENST00000287008 KRTAP4-6Q9BYQ5 205 aa4.37□□□□□ -1.71
PCDH1-201ENST00000287008 KRTAP20-2Q3LI61 65 aa4.32□□□□□ -1.72
PCDH1-201ENST00000287008 KRTAP5-4Q6L8H1 288 aa3.99□□□□□ -1.77
PCDH1-201ENST00000287008 KRTAP4-11Q9BYQ6 195 aa3.94□□□□□ -1.78
PCDH1-201ENST00000287008 KRTAP4-12Q9BQ66 201 aa3.82□□□□□ -1.8
PCDH1-201ENST00000287008 KRTAP4-2Q9BYR5 136 aa3.82□□□□□ -1.8
PCDH1-201ENST00000287008 MUC5ACP98088 5654 aa3.81□□□□□ -1.8
PCDH1-201ENST00000287008 KRTAP4-4Q9BYR3 166 aa3.78□□□□□ -1.81
PCDH1-201ENST00000287008 HMCN1Q96RW7 5635 aa3.75□□□□□ -1.81
PCDH1-201ENST00000287008 KRTAP5-5Q701N2 237 aaPredicted RBP3.74□□□□□ -1.81
PCDH1-201ENST00000287008 AHNAK2Q8IVF2 5795 aa3.7□□□□□ -1.82
PCDH1-201ENST00000287008 KRTAP5-3Q6L8H2 238 aa3.66□□□□□ -1.82
PCDH1-201ENST00000287008 KRTAP5-8O75690 187 aa3.3□□□□□ -1.88
PCDH1-201ENST00000287008 KRTAP5-2Q701N4 177 aa3.14□□□□□ -1.91
PCDH1-201ENST00000287008 AHNAKQ09666 5890 aaKnown RBP3.1□□□□□ -1.91
PCDH1-201ENST00000287008 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
PCDH1-201ENST00000287008 MUC5BQ9HC84 5762 aaPredicted RBP2.99□□□□□ -1.93
PCDH1-201ENST00000287008 PHGR1C9JFL3 82 aa2.93□□□□□ -1.94
PCDH1-201ENST00000287008 KRTAP5-11Q6L8G4 156 aa2.85□□□□□ -1.95
PCDH1-201ENST00000287008 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.96
PCDH1-201ENST00000287008 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
PCDH1-201ENST00000287008 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.47□□□□□ -2.01
PCDH1-201ENST00000287008 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
PCDH1-201ENST00000287008 KRTAP21-1Q3LI58 79 aa2.22□□□□□ -2.05
PCDH1-201ENST00000287008 MUC16Q8WXI7 14507 aa1.78□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 12.7 ms