RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 KRTAP2-4Q9BYR9 128 aa2.35□□□□□ -2.03
LIMD1-201ENST00000273317 KRTAP2-1Q9BYU5 128 aa2.35□□□□□ -2.03
LIMD1-201ENST00000273317 KIAA1109Q2LD37 5005 aa2.34□□□□□ -2.03
LIMD1-201ENST00000273317 MT1AP04731 61 aa2.34□□□□□ -2.03
LIMD1-201ENST00000273317 MUC2Q02817 5179 aa2.34□□□□□ -2.03
LIMD1-201ENST00000273317 LCE4AQ5TA78 99 aa2.29□□□□□ -2.04
LIMD1-201ENST00000273317 RYR2Q92736 4967 aa2.28□□□□□ -2.05
LIMD1-201ENST00000273317 LCE5AQ5TCM9 118 aa2.27□□□□□ -2.05
LIMD1-201ENST00000273317 ABCA13Q86UQ4 5058 aa2.23□□□□□ -2.05
LIMD1-201ENST00000273317 LCE1CQ5T751 118 aa2.23□□□□□ -2.05
LIMD1-201ENST00000273317 LCE1EQ5T753 118 aa2.23□□□□□ -2.05
LIMD1-201ENST00000273317 LCE1FQ5T754 118 aa2.23□□□□□ -2.05
LIMD1-201ENST00000273317 LCE1AQ5T7P2 110 aa2.23□□□□□ -2.05
LIMD1-201ENST00000273317 HERC2O95714 4834 aa2.23□□□□□ -2.05
LIMD1-201ENST00000273317 HERC1Q15751 4861 aa2.23□□□□□ -2.05
LIMD1-201ENST00000273317 KRTAP19-7Q3SYF9 63 aa2.23□□□□□ -2.05
LIMD1-201ENST00000273317 EPPK1P58107 5090 aaKnown RBP2.21□□□□□ -2.06
LIMD1-201ENST00000273317 KRTAP6-2Q3LI66 62 aa2.19□□□□□ -2.06
LIMD1-201ENST00000273317 MUC17Q685J3 4493 aa2.19□□□□□ -2.06
LIMD1-201ENST00000273317 KRTAP9-7A8MTY7 169 aa2.18□□□□□ -2.06
LIMD1-201ENST00000273317 KRTAP9-2Q9BYQ4 174 aa2.18□□□□□ -2.06
LIMD1-201ENST00000273317 BIRC6Q9NR09 4857 aa2.16□□□□□ -2.06
LIMD1-201ENST00000273317 KRTAP20-1Q3LI63 56 aa2.14□□□□□ -2.07
LIMD1-201ENST00000273317 KRTAP9-4Q9BYQ2 154 aa2.12□□□□□ -2.07
LIMD1-201ENST00000273317 FAT4Q6V0I7 4981 aa2.11□□□□□ -2.07
LIMD1-201ENST00000273317 KRTAP6-1Q3LI64 71 aa2.1□□□□□ -2.07
LIMD1-201ENST00000273317 RNF213Q63HN8 5207 aa2.1□□□□□ -2.07
LIMD1-201ENST00000273317 LCE2AQ5TA79 106 aaPredicted RBP2.08□□□□□ -2.08
LIMD1-201ENST00000273317 UBR4Q5T4S7 5183 aa2.07□□□□□ -2.08
LIMD1-201ENST00000273317 KRTAP9-6A0A140TA67 174 aa2.07□□□□□ -2.08
LIMD1-201ENST00000273317 KRTAP6-3Q3LI67 103 aa2.07□□□□□ -2.08
LIMD1-201ENST00000273317 HMCN2Q8NDA2 5059 aa2.04□□□□□ -2.08
LIMD1-201ENST00000273317 KRTAP9-6A8MVA2 160 aa2.03□□□□□ -2.08
LIMD1-201ENST00000273317 KRTAP4-11Q9BYQ6 195 aa1.98□□□□□ -2.09
LIMD1-201ENST00000273317 KRTAP2-2Q9BYT5 123 aa1.95□□□□□ -2.1
LIMD1-201ENST00000273317 FSIP2Q5CZC0 6907 aa1.93□□□□□ -2.1
LIMD1-201ENST00000273317 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
LIMD1-201ENST00000273317 KMT2DO14686 5537 aa1.91□□□□□ -2.1
LIMD1-201ENST00000273317 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.9□□□□□ -2.1
LIMD1-201ENST00000273317 KRTAP20-2Q3LI61 65 aa1.89□□□□□ -2.11
LIMD1-201ENST00000273317 KRTAP9-9Q9BYP9 154 aa1.87□□□□□ -2.11
LIMD1-201ENST00000273317 SYNE2Q8WXH0 6885 aaKnown RBP1.86□□□□□ -2.11
LIMD1-201ENST00000273317 SYNE1Q8NF91 8797 aaKnown RBP1.85□□□□□ -2.11
LIMD1-201ENST00000273317 USH2AO75445 5202 aa1.84□□□□□ -2.11
LIMD1-201ENST00000273317 DSTQ03001 7570 aaKnown RBP1.81□□□□□ -2.12
LIMD1-201ENST00000273317 KRTAP4-12Q9BQ66 201 aa1.78□□□□□ -2.12
LIMD1-201ENST00000273317 KRTAP4-2Q9BYR5 136 aa1.78□□□□□ -2.12
LIMD1-201ENST00000273317 KRTAP4-6Q9BYQ5 205 aa1.75□□□□□ -2.13
LIMD1-201ENST00000273317 KRTAP5-9P26371 169 aa1.72□□□□□ -2.13
LIMD1-201ENST00000273317 FCGBPQ9Y6R7 5405 aaPredicted RBP1.7□□□□□ -2.14
LIMD1-201ENST00000273317 OBSCNQ5VST9 7968 aa1.66□□□□□ -2.14
LIMD1-201ENST00000273317 MUC12Q9UKN1 5478 aa1.64□□□□□ -2.15
LIMD1-201ENST00000273317 KRTAP5-4Q6L8H1 288 aa1.64□□□□□ -2.15
LIMD1-201ENST00000273317 SSPOA2VEC9 5147 aa1.6□□□□□ -2.15
LIMD1-201ENST00000273317 KRTAP5-5Q701N2 237 aaPredicted RBP1.58□□□□□ -2.16
LIMD1-201ENST00000273317 MACF1Q9UPN3 7388 aaKnown RBP1.56□□□□□ -2.16
LIMD1-201ENST00000273317 MDN1Q9NU22 5596 aa1.55□□□□□ -2.16
LIMD1-201ENST00000273317 NEBP20929 6669 aa1.51□□□□□ -2.17
LIMD1-201ENST00000273317 MUC19Q7Z5P9 8384 aa1.47□□□□□ -2.17
LIMD1-201ENST00000273317 KRTAP5-3Q6L8H2 238 aa1.41□□□□□ -2.18
LIMD1-201ENST00000273317 GPR98Q8WXG9 6306 aa1.4□□□□□ -2.19
LIMD1-201ENST00000273317 HMCN1Q96RW7 5635 aa1.39□□□□□ -2.19
LIMD1-201ENST00000273317 MUC5ACP98088 5654 aa1.35□□□□□ -2.19
LIMD1-201ENST00000273317 AHNAK2Q8IVF2 5795 aa1.3□□□□□ -2.2
LIMD1-201ENST00000273317 KRTAP5-2Q701N4 177 aa1.29□□□□□ -2.2
LIMD1-201ENST00000273317 MUC5BQ9HC84 5762 aaPredicted RBP1.27□□□□□ -2.21
LIMD1-201ENST00000273317 AHNAKQ09666 5890 aaKnown RBP1.27□□□□□ -2.21
LIMD1-201ENST00000273317 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.27□□□□□ -2.21
LIMD1-201ENST00000273317 KRTAP5-10Q6L8G5 202 aa1.25□□□□□ -2.21
LIMD1-201ENST00000273317 KRTAP5-8O75690 187 aa1.21□□□□□ -2.22
LIMD1-201ENST00000273317 KRTAP5-1Q6L8H4 278 aa1.17□□□□□ -2.22
LIMD1-201ENST00000273317 KRTAP5-11Q6L8G4 156 aa1.16□□□□□ -2.22
LIMD1-201ENST00000273317 PHGR1C9JFL3 82 aa1.13□□□□□ -2.23
LIMD1-201ENST00000273317 KRTAP5-7Q6L8G8 165 aa1.1□□□□□ -2.23
LIMD1-201ENST00000273317 KRTAP21-1Q3LI58 79 aa1.09□□□□□ -2.24
LIMD1-201ENST00000273317 KRTAP21-2Q3LI59 83 aa1.04□□□□□ -2.24
LIMD1-201ENST00000273317 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 103.8 ms