RNA–Protein interactions for RNA: ENST00000253251.12

UBE4B-201, Transcript of ubiquitination factor E4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE4B, Length 4,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-201ENST00000253251 UBR4Q5T4S7 5183 aa4.9□□□□□ -1.63
UBE4B-201ENST00000253251 MT1MQ8N339 61 aa4.87□□□□□ -1.63
UBE4B-201ENST00000253251 KRTAP19-7Q3SYF9 63 aa4.79□□□□□ -1.64
UBE4B-201ENST00000253251 KRTAP4-7Q9BYR0 210 aa4.78□□□□□ -1.64
UBE4B-201ENST00000253251 LCE3DQ9BYE3 92 aa4.73□□□□□ -1.65
UBE4B-201ENST00000253251 KRTAP9-6A0A140TA67 174 aa4.72□□□□□ -1.65
UBE4B-201ENST00000253251 LCE3EQ5T5B0 92 aa4.66□□□□□ -1.66
UBE4B-201ENST00000253251 LCE1AQ5T7P2 110 aa4.62□□□□□ -1.67
UBE4B-201ENST00000253251 MT3P25713 68 aa4.61□□□□□ -1.67
UBE4B-201ENST00000253251 KRTAP6-3Q3LI67 103 aa4.58□□□□□ -1.68
UBE4B-201ENST00000253251 MT1AP04731 61 aa4.54□□□□□ -1.68
UBE4B-201ENST00000253251 KRTAP4-3Q9BYR4 195 aa4.53□□□□□ -1.68
UBE4B-201ENST00000253251 LOC100996750A0A140TA64 210 aa4.49□□□□□ -1.69
UBE4B-201ENST00000253251 FSIP2Q5CZC0 6907 aa4.46□□□□□ -1.7
UBE4B-201ENST00000253251 LCE5AQ5TCM9 118 aa4.44□□□□□ -1.7
UBE4B-201ENST00000253251 MUC2Q02817 5179 aa4.42□□□□□ -1.7
UBE4B-201ENST00000253251 KRTAP9-7A8MTY7 169 aa4.42□□□□□ -1.7
UBE4B-201ENST00000253251 KRTAP2-3P0C7H8 128 aa4.41□□□□□ -1.7
UBE4B-201ENST00000253251 KRTAP2-4Q9BYR9 128 aa4.41□□□□□ -1.7
UBE4B-201ENST00000253251 KRTAP2-1Q9BYU5 128 aa4.41□□□□□ -1.7
UBE4B-201ENST00000253251 MT4P47944 62 aa4.41□□□□□ -1.7
UBE4B-201ENST00000253251 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.4□□□□□ -1.71
UBE4B-201ENST00000253251 KRTAP20-1Q3LI63 56 aa4.33□□□□□ -1.72
UBE4B-201ENST00000253251 SYNE1Q8NF91 8797 aaKnown RBP4.29□□□□□ -1.72
UBE4B-201ENST00000253251 USH2AO75445 5202 aa4.29□□□□□ -1.72
UBE4B-201ENST00000253251 LCE4AQ5TA78 99 aa4.26□□□□□ -1.73
UBE4B-201ENST00000253251 KRTAP9-6A8MVA2 160 aa4.24□□□□□ -1.73
UBE4B-201ENST00000253251 KRTAP2-2Q9BYT5 123 aa4.18□□□□□ -1.74
UBE4B-201ENST00000253251 KRTAP9-4Q9BYQ2 154 aa4.18□□□□□ -1.74
UBE4B-201ENST00000253251 KRTAP6-1Q3LI64 71 aa4.17□□□□□ -1.74
UBE4B-201ENST00000253251 SYNE2Q8WXH0 6885 aaKnown RBP4.17□□□□□ -1.74
UBE4B-201ENST00000253251 KRTAP5-9P26371 169 aa4.13□□□□□ -1.75
UBE4B-201ENST00000253251 LCE1DQ5T752 114 aa4.11□□□□□ -1.75
UBE4B-201ENST00000253251 PRM1P04553 51 aa4.1□□□□□ -1.75
UBE4B-201ENST00000253251 LCE1BQ5T7P3 118 aa4.06□□□□□ -1.76
UBE4B-201ENST00000253251 KRTAP6-2Q3LI66 62 aa4.05□□□□□ -1.76
UBE4B-201ENST00000253251 KRTAP4-9Q9BYQ8 210 aa4.03□□□□□ -1.76
UBE4B-201ENST00000253251 SSPOA2VEC9 5147 aa3.95□□□□□ -1.78
UBE4B-201ENST00000253251 OBSCNQ5VST9 7968 aa3.95□□□□□ -1.78
UBE4B-201ENST00000253251 FCGBPQ9Y6R7 5405 aaPredicted RBP3.94□□□□□ -1.78
UBE4B-201ENST00000253251 MACF1Q9UPN3 7388 aaKnown RBP3.83□□□□□ -1.8
UBE4B-201ENST00000253251 NEBP20929 6669 aa3.78□□□□□ -1.8
UBE4B-201ENST00000253251 KMT2DO14686 5537 aa3.72□□□□□ -1.81
UBE4B-201ENST00000253251 DSTQ03001 7570 aaKnown RBP3.62□□□□□ -1.83
UBE4B-201ENST00000253251 MUC12Q9UKN1 5478 aa3.62□□□□□ -1.83
UBE4B-201ENST00000253251 KRTAP20-2Q3LI61 65 aa3.61□□□□□ -1.83
UBE4B-201ENST00000253251 KRTAP4-6Q9BYQ5 205 aa3.55□□□□□ -1.84
UBE4B-201ENST00000253251 MDN1Q9NU22 5596 aa3.53□□□□□ -1.84
UBE4B-201ENST00000253251 KRTAP5-4Q6L8H1 288 aa3.49□□□□□ -1.85
UBE4B-201ENST00000253251 KRTAP5-5Q701N2 237 aaPredicted RBP3.46□□□□□ -1.86
UBE4B-201ENST00000253251 KRTAP9-9Q9BYP9 154 aa3.46□□□□□ -1.86
UBE4B-201ENST00000253251 LCE1CQ5T751 118 aa3.35□□□□□ -1.87
UBE4B-201ENST00000253251 LCE1EQ5T753 118 aa3.35□□□□□ -1.87
UBE4B-201ENST00000253251 LCE1FQ5T754 118 aa3.35□□□□□ -1.87
UBE4B-201ENST00000253251 KRTAP4-11Q9BYQ6 195 aa3.21□□□□□ -1.9
UBE4B-201ENST00000253251 GPR98Q8WXG9 6306 aa3.2□□□□□ -1.9
UBE4B-201ENST00000253251 MUC19Q7Z5P9 8384 aa3.13□□□□□ -1.91
UBE4B-201ENST00000253251 KRTAP5-3Q6L8H2 238 aa3.04□□□□□ -1.92
UBE4B-201ENST00000253251 KRTAP5-2Q701N4 177 aa2.95□□□□□ -1.94
UBE4B-201ENST00000253251 AHNAK2Q8IVF2 5795 aa2.83□□□□□ -1.96
UBE4B-201ENST00000253251 KRTAP4-12Q9BQ66 201 aa2.83□□□□□ -1.96
UBE4B-201ENST00000253251 KRTAP4-2Q9BYR5 136 aa2.83□□□□□ -1.96
UBE4B-201ENST00000253251 HMCN1Q96RW7 5635 aa2.82□□□□□ -1.96
UBE4B-201ENST00000253251 MUC5ACP98088 5654 aa2.8□□□□□ -1.96
UBE4B-201ENST00000253251 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
UBE4B-201ENST00000253251 KRTAP5-8O75690 187 aa2.71□□□□□ -1.98
UBE4B-201ENST00000253251 KRTAP5-10Q6L8G5 202 aa2.6□□□□□ -1.99
UBE4B-201ENST00000253251 KRTAP5-11Q6L8G4 156 aa2.51□□□□□ -2.01
UBE4B-201ENST00000253251 KRTAP5-1Q6L8H4 278 aa2.51□□□□□ -2.01
UBE4B-201ENST00000253251 MUC5BQ9HC84 5762 aaPredicted RBP2.45□□□□□ -2.02
UBE4B-201ENST00000253251 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
UBE4B-201ENST00000253251 AHNAKQ09666 5890 aaKnown RBP2.36□□□□□ -2.03
UBE4B-201ENST00000253251 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
UBE4B-201ENST00000253251 KRTAP5-7Q6L8G8 165 aa2.27□□□□□ -2.05
UBE4B-201ENST00000253251 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
UBE4B-201ENST00000253251 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
UBE4B-201ENST00000253251 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 7.9 ms