RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 LCE1AQ5T7P2 110 aa4.55□□□□□ -1.68
LDLR-201ENST00000252444 KRTAP6-3Q3LI67 103 aa4.54□□□□□ -1.68
LDLR-201ENST00000252444 FAT4Q6V0I7 4981 aa4.52□□□□□ -1.69
LDLR-201ENST00000252444 MT1MQ8N339 61 aa4.5□□□□□ -1.69
LDLR-201ENST00000252444 KRTAP19-7Q3SYF9 63 aa4.39□□□□□ -1.71
LDLR-201ENST00000252444 LCE3BQ5TA77 95 aa4.37□□□□□ -1.71
LDLR-201ENST00000252444 MT3P25713 68 aa4.27□□□□□ -1.73
LDLR-201ENST00000252444 KRTAP9-7A8MTY7 169 aa4.26□□□□□ -1.73
LDLR-201ENST00000252444 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.26□□□□□ -1.73
LDLR-201ENST00000252444 MT1AP04731 61 aa4.25□□□□□ -1.73
LDLR-201ENST00000252444 UBR4Q5T4S7 5183 aa4.25□□□□□ -1.73
LDLR-201ENST00000252444 KRTAP20-1Q3LI63 56 aa4.25□□□□□ -1.73
LDLR-201ENST00000252444 KRTAP2-3P0C7H8 128 aa4.24□□□□□ -1.73
LDLR-201ENST00000252444 KRTAP2-4Q9BYR9 128 aa4.24□□□□□ -1.73
LDLR-201ENST00000252444 LCE3DQ9BYE3 92 aa4.22□□□□□ -1.73
LDLR-201ENST00000252444 LCE4AQ5TA78 99 aa4.21□□□□□ -1.74
LDLR-201ENST00000252444 LCE5AQ5TCM9 118 aa4.19□□□□□ -1.74
LDLR-201ENST00000252444 LCE3EQ5T5B0 92 aa4.18□□□□□ -1.74
LDLR-201ENST00000252444 KRTAP4-7Q9BYR0 210 aa4.1□□□□□ -1.75
LDLR-201ENST00000252444 KRTAP5-9P26371 169 aa4.09□□□□□ -1.75
LDLR-201ENST00000252444 KRTAP2-2Q9BYT5 123 aa4.08□□□□□ -1.76
LDLR-201ENST00000252444 KRTAP2-1Q9BYU5 128 aa4.08□□□□□ -1.76
LDLR-201ENST00000252444 MT4P47944 62 aa3.96□□□□□ -1.78
LDLR-201ENST00000252444 KRTAP4-3Q9BYR4 195 aa3.93□□□□□ -1.78
LDLR-201ENST00000252444 KRTAP9-4Q9BYQ2 154 aa3.92□□□□□ -1.78
LDLR-201ENST00000252444 LOC100996750A0A140TA64 210 aa3.89□□□□□ -1.79
LDLR-201ENST00000252444 SSPOA2VEC9 5147 aa3.8□□□□□ -1.8
LDLR-201ENST00000252444 USH2AO75445 5202 aa3.8□□□□□ -1.8
LDLR-201ENST00000252444 KRTAP6-1Q3LI64 71 aa3.76□□□□□ -1.81
LDLR-201ENST00000252444 SYNE1Q8NF91 8797 aaKnown RBP3.7□□□□□ -1.82
LDLR-201ENST00000252444 KRTAP9-6A8MVA2 160 aa3.69□□□□□ -1.82
LDLR-201ENST00000252444 KRTAP6-2Q3LI66 62 aa3.65□□□□□ -1.83
LDLR-201ENST00000252444 FSIP2Q5CZC0 6907 aa3.63□□□□□ -1.83
LDLR-201ENST00000252444 NEBP20929 6669 aa3.63□□□□□ -1.83
LDLR-201ENST00000252444 LCE1DQ5T752 114 aa3.62□□□□□ -1.83
LDLR-201ENST00000252444 SYNE2Q8WXH0 6885 aaKnown RBP3.59□□□□□ -1.83
LDLR-201ENST00000252444 LCE1BQ5T7P3 118 aa3.54□□□□□ -1.84
LDLR-201ENST00000252444 MUC2Q02817 5179 aa3.54□□□□□ -1.84
LDLR-201ENST00000252444 PRM1P04553 51 aa3.52□□□□□ -1.85
LDLR-201ENST00000252444 KRTAP5-4Q6L8H1 288 aa3.49□□□□□ -1.85
LDLR-201ENST00000252444 FCGBPQ9Y6R7 5405 aaPredicted RBP3.47□□□□□ -1.85
LDLR-201ENST00000252444 KRTAP4-9Q9BYQ8 210 aa3.47□□□□□ -1.85
LDLR-201ENST00000252444 KRTAP20-2Q3LI61 65 aa3.43□□□□□ -1.86
LDLR-201ENST00000252444 KRTAP5-5Q701N2 237 aaPredicted RBP3.36□□□□□ -1.87
LDLR-201ENST00000252444 OBSCNQ5VST9 7968 aa3.32□□□□□ -1.88
LDLR-201ENST00000252444 MACF1Q9UPN3 7388 aaKnown RBP3.31□□□□□ -1.88
LDLR-201ENST00000252444 KRTAP9-9Q9BYP9 154 aa3.31□□□□□ -1.88
LDLR-201ENST00000252444 LCE1EQ5T753 118 aa3.24□□□□□ -1.89
LDLR-201ENST00000252444 KRTAP4-6Q9BYQ5 205 aa3.21□□□□□ -1.9
LDLR-201ENST00000252444 MDN1Q9NU22 5596 aa3.09□□□□□ -1.92
LDLR-201ENST00000252444 KMT2DO14686 5537 aa3.05□□□□□ -1.92
LDLR-201ENST00000252444 LCE1CQ5T751 118 aa3.05□□□□□ -1.92
LDLR-201ENST00000252444 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
LDLR-201ENST00000252444 KRTAP4-11Q9BYQ6 195 aa3.03□□□□□ -1.92
LDLR-201ENST00000252444 KRTAP5-3Q6L8H2 238 aa3.01□□□□□ -1.93
LDLR-201ENST00000252444 DSTQ03001 7570 aaKnown RBP3□□□□□ -1.93
LDLR-201ENST00000252444 GPR98Q8WXG9 6306 aa2.95□□□□□ -1.94
LDLR-201ENST00000252444 KRTAP5-2Q701N4 177 aa2.94□□□□□ -1.94
LDLR-201ENST00000252444 MUC12Q9UKN1 5478 aa2.84□□□□□ -1.95
LDLR-201ENST00000252444 KRTAP5-8O75690 187 aa2.69□□□□□ -1.98
LDLR-201ENST00000252444 MUC19Q7Z5P9 8384 aa2.67□□□□□ -1.98
LDLR-201ENST00000252444 MUC5ACP98088 5654 aa2.66□□□□□ -1.98
LDLR-201ENST00000252444 AHNAK2Q8IVF2 5795 aa2.64□□□□□ -1.99
LDLR-201ENST00000252444 KRTAP4-12Q9BQ66 201 aa2.61□□□□□ -1.99
LDLR-201ENST00000252444 HMCN1Q96RW7 5635 aa2.6□□□□□ -1.99
LDLR-201ENST00000252444 KRTAP5-11Q6L8G4 156 aa2.48□□□□□ -2.01
LDLR-201ENST00000252444 KRTAP5-10Q6L8G5 202 aa2.45□□□□□ -2.02
LDLR-201ENST00000252444 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
LDLR-201ENST00000252444 KRTAP5-7Q6L8G8 165 aa2.44□□□□□ -2.02
LDLR-201ENST00000252444 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.44□□□□□ -2.02
LDLR-201ENST00000252444 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
LDLR-201ENST00000252444 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
LDLR-201ENST00000252444 MUC5BQ9HC84 5762 aaPredicted RBP2.35□□□□□ -2.03
LDLR-201ENST00000252444 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
LDLR-201ENST00000252444 KRTAP21-2Q3LI59 83 aa2.16□□□□□ -2.06
LDLR-201ENST00000252444 PHGR1C9JFL3 82 aa2.03□□□□□ -2.08
LDLR-201ENST00000252444 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
LDLR-201ENST00000252444 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 11.7 ms