RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 ABCA13Q86UQ4 5058 aa5.87□□□□□ -1.47
SMPD3-201ENST00000219334 KRTAP9-6A0A140TA67 174 aa5.86□□□□□ -1.47
SMPD3-201ENST00000219334 MUC17Q685J3 4493 aa5.79□□□□□ -1.48
SMPD3-201ENST00000219334 LCE1BQ5T7P3 118 aa5.75□□□□□ -1.49
SMPD3-201ENST00000219334 LCE2AQ5TA79 106 aaPredicted RBP5.74□□□□□ -1.49
SMPD3-201ENST00000219334 LCE1DQ5T752 114 aa5.73□□□□□ -1.49
SMPD3-201ENST00000219334 FLGP20930 4061 aaPredicted RBP5.72□□□□□ -1.49
SMPD3-201ENST00000219334 LOC100996750A0A140TA64 210 aa5.72□□□□□ -1.49
SMPD3-201ENST00000219334 KRTAP4-3Q9BYR4 195 aa5.71□□□□□ -1.5
SMPD3-201ENST00000219334 UBR4Q5T4S7 5183 aa5.69□□□□□ -1.5
SMPD3-201ENST00000219334 FSIP2Q5CZC0 6907 aa5.63□□□□□ -1.51
SMPD3-201ENST00000219334 KRTAP20-1Q3LI63 56 aa5.62□□□□□ -1.51
SMPD3-201ENST00000219334 RNF213Q63HN8 5207 aa5.61□□□□□ -1.51
SMPD3-201ENST00000219334 PRM1P04553 51 aa5.58□□□□□ -1.52
SMPD3-201ENST00000219334 MT1AP04731 61 aa5.58□□□□□ -1.52
SMPD3-201ENST00000219334 KRTAP19-7Q3SYF9 63 aa5.56□□□□□ -1.52
SMPD3-201ENST00000219334 FAT4Q6V0I7 4981 aa5.55□□□□□ -1.52
SMPD3-201ENST00000219334 KRTAP9-7A8MTY7 169 aa5.54□□□□□ -1.52
SMPD3-201ENST00000219334 SYNE2Q8WXH0 6885 aaKnown RBP5.47□□□□□ -1.53
SMPD3-201ENST00000219334 KRTAP6-3Q3LI67 103 aa5.45□□□□□ -1.54
SMPD3-201ENST00000219334 MUC2Q02817 5179 aa5.45□□□□□ -1.54
SMPD3-201ENST00000219334 LCE1AQ5T7P2 110 aa5.44□□□□□ -1.54
SMPD3-201ENST00000219334 LCE5AQ5TCM9 118 aa5.43□□□□□ -1.54
SMPD3-201ENST00000219334 KRTAP2-3P0C7H8 128 aa5.39□□□□□ -1.55
SMPD3-201ENST00000219334 KRTAP2-4Q9BYR9 128 aa5.39□□□□□ -1.55
SMPD3-201ENST00000219334 KRTAP2-1Q9BYU5 128 aa5.39□□□□□ -1.55
SMPD3-201ENST00000219334 HMCN2Q8NDA2 5059 aa5.34□□□□□ -1.55
SMPD3-201ENST00000219334 KRTAP4-9Q9BYQ8 210 aa5.29□□□□□ -1.56
SMPD3-201ENST00000219334 OBSCNQ5VST9 7968 aa5.28□□□□□ -1.56
SMPD3-201ENST00000219334 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.27□□□□□ -1.57
SMPD3-201ENST00000219334 LCE4AQ5TA78 99 aa5.24□□□□□ -1.57
SMPD3-201ENST00000219334 KRTAP2-2Q9BYT5 123 aa5.21□□□□□ -1.58
SMPD3-201ENST00000219334 KRTAP6-2Q3LI66 62 aa5.16□□□□□ -1.58
SMPD3-201ENST00000219334 KRTAP6-1Q3LI64 71 aa5.14□□□□□ -1.59
SMPD3-201ENST00000219334 KRTAP9-4Q9BYQ2 154 aa5.12□□□□□ -1.59
SMPD3-201ENST00000219334 LCE1CQ5T751 118 aa4.97□□□□□ -1.61
SMPD3-201ENST00000219334 LCE1EQ5T753 118 aa4.97□□□□□ -1.61
SMPD3-201ENST00000219334 LCE1FQ5T754 118 aa4.97□□□□□ -1.61
SMPD3-201ENST00000219334 KRTAP9-6A8MVA2 160 aa4.96□□□□□ -1.62
SMPD3-201ENST00000219334 USH2AO75445 5202 aa4.79□□□□□ -1.64
SMPD3-201ENST00000219334 DSTQ03001 7570 aaKnown RBP4.71□□□□□ -1.65
SMPD3-201ENST00000219334 MACF1Q9UPN3 7388 aaKnown RBP4.71□□□□□ -1.66
SMPD3-201ENST00000219334 FCGBPQ9Y6R7 5405 aaPredicted RBP4.67□□□□□ -1.66
SMPD3-201ENST00000219334 KRTAP9-9Q9BYP9 154 aa4.66□□□□□ -1.66
SMPD3-201ENST00000219334 NEBP20929 6669 aa4.58□□□□□ -1.68
SMPD3-201ENST00000219334 KMT2DO14686 5537 aa4.5□□□□□ -1.69
SMPD3-201ENST00000219334 KRTAP5-9P26371 169 aa4.48□□□□□ -1.69
SMPD3-201ENST00000219334 GPR98Q8WXG9 6306 aa4.41□□□□□ -1.7
SMPD3-201ENST00000219334 KRTAP4-6Q9BYQ5 205 aa4.34□□□□□ -1.71
SMPD3-201ENST00000219334 MDN1Q9NU22 5596 aa4.31□□□□□ -1.72
SMPD3-201ENST00000219334 MUC19Q7Z5P9 8384 aa4.3□□□□□ -1.72
SMPD3-201ENST00000219334 KRTAP20-2Q3LI61 65 aa4.3□□□□□ -1.72
SMPD3-201ENST00000219334 SSPOA2VEC9 5147 aa4.29□□□□□ -1.72
SMPD3-201ENST00000219334 KRTAP4-11Q9BYQ6 195 aa4.11□□□□□ -1.75
SMPD3-201ENST00000219334 MUC12Q9UKN1 5478 aa4.03□□□□□ -1.76
SMPD3-201ENST00000219334 KRTAP5-4Q6L8H1 288 aa3.99□□□□□ -1.77
SMPD3-201ENST00000219334 KRTAP4-12Q9BQ66 201 aa3.94□□□□□ -1.78
SMPD3-201ENST00000219334 KRTAP4-2Q9BYR5 136 aa3.94□□□□□ -1.78
SMPD3-201ENST00000219334 KRTAP4-4Q9BYR3 166 aa3.92□□□□□ -1.78
SMPD3-201ENST00000219334 KRTAP5-5Q701N2 237 aaPredicted RBP3.79□□□□□ -1.8
SMPD3-201ENST00000219334 KRTAP5-3Q6L8H2 238 aa3.57□□□□□ -1.84
SMPD3-201ENST00000219334 MUC5ACP98088 5654 aa3.54□□□□□ -1.84
SMPD3-201ENST00000219334 AHNAK2Q8IVF2 5795 aa3.52□□□□□ -1.85
SMPD3-201ENST00000219334 HMCN1Q96RW7 5635 aa3.41□□□□□ -1.86
SMPD3-201ENST00000219334 KRTAP5-8O75690 187 aa3.24□□□□□ -1.89
SMPD3-201ENST00000219334 PHGR1C9JFL3 82 aa3.06□□□□□ -1.92
SMPD3-201ENST00000219334 KRTAP5-2Q701N4 177 aa2.97□□□□□ -1.93
SMPD3-201ENST00000219334 KRTAP5-10Q6L8G5 202 aa2.96□□□□□ -1.94
SMPD3-201ENST00000219334 MUC5BQ9HC84 5762 aaPredicted RBP2.92□□□□□ -1.94
SMPD3-201ENST00000219334 AHNAKQ09666 5890 aaKnown RBP2.91□□□□□ -1.94
SMPD3-201ENST00000219334 KRTAP5-11Q6L8G4 156 aa2.78□□□□□ -1.96
SMPD3-201ENST00000219334 KRTAP5-1Q6L8H4 278 aa2.66□□□□□ -1.98
SMPD3-201ENST00000219334 KRTAP21-2Q3LI59 83 aa2.52□□□□□ -2.01
SMPD3-201ENST00000219334 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
SMPD3-201ENST00000219334 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.37□□□□□ -2.03
SMPD3-201ENST00000219334 KRTAP5-7Q6L8G8 165 aa2.31□□□□□ -2.04
SMPD3-201ENST00000219334 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 10.8 ms