RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 KRTAP9-7A8MTY7 169 aa1.36□□□□□ -2.19
CHD9-201ENST00000219084 MT1AP04731 61 aa1.36□□□□□ -2.19
CHD9-201ENST00000219084 ABCA13Q86UQ4 5058 aa1.35□□□□□ -2.19
CHD9-201ENST00000219084 KRTAP4-8A0A0G2JLE6 195 aa1.35□□□□□ -2.19
CHD9-201ENST00000219084 KRTAP4-8Q9BYQ9 185 aa1.35□□□□□ -2.19
CHD9-201ENST00000219084 UBR4Q5T4S7 5183 aa1.34□□□□□ -2.19
CHD9-201ENST00000219084 EPPK1P58107 5090 aaKnown RBP1.33□□□□□ -2.2
CHD9-201ENST00000219084 HERC1Q15751 4861 aa1.32□□□□□ -2.2
CHD9-201ENST00000219084 MUC12Q9UKN1 5478 aa1.32□□□□□ -2.2
CHD9-201ENST00000219084 SYNE1Q8NF91 8797 aaKnown RBP1.31□□□□□ -2.2
CHD9-201ENST00000219084 HMCN2Q8NDA2 5059 aa1.31□□□□□ -2.2
CHD9-201ENST00000219084 PRM1P04553 51 aa1.31□□□□□ -2.2
CHD9-201ENST00000219084 LCE2AQ5TA79 106 aaPredicted RBP1.29□□□□□ -2.2
CHD9-201ENST00000219084 LRP2P98164 4655 aa1.29□□□□□ -2.2
CHD9-201ENST00000219084 MUC5BQ9HC84 5762 aaPredicted RBP1.29□□□□□ -2.2
CHD9-201ENST00000219084 FAT4Q6V0I7 4981 aa1.29□□□□□ -2.2
CHD9-201ENST00000219084 KRTAP6-3Q3LI67 103 aa1.28□□□□□ -2.2
CHD9-201ENST00000219084 KRTAP19-7Q3SYF9 63 aa1.28□□□□□ -2.2
CHD9-201ENST00000219084 LCE1AQ5T7P2 110 aa1.27□□□□□ -2.21
CHD9-201ENST00000219084 SSPOA2VEC9 5147 aa1.27□□□□□ -2.21
CHD9-201ENST00000219084 LPAP08519 4548 aa1.27□□□□□ -2.21
CHD9-201ENST00000219084 MT4P47944 62 aa1.27□□□□□ -2.21
CHD9-201ENST00000219084 HERC2O95714 4834 aa1.26□□□□□ -2.21
CHD9-201ENST00000219084 KRTAP4-7Q9BYR0 210 aa1.25□□□□□ -2.21
CHD9-201ENST00000219084 MDN1Q9NU22 5596 aa1.25□□□□□ -2.21
CHD9-201ENST00000219084 RNF213Q63HN8 5207 aa1.24□□□□□ -2.21
CHD9-201ENST00000219084 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.24□□□□□ -2.21
CHD9-201ENST00000219084 LCE4AQ5TA78 99 aa1.23□□□□□ -2.21
CHD9-201ENST00000219084 LCE5AQ5TCM9 118 aa1.21□□□□□ -2.22
CHD9-201ENST00000219084 LOC100996750A0A140TA64 210 aa1.21□□□□□ -2.22
CHD9-201ENST00000219084 KRTAP9-4Q9BYQ2 154 aa1.2□□□□□ -2.22
CHD9-201ENST00000219084 HMCN1Q96RW7 5635 aa1.19□□□□□ -2.22
CHD9-201ENST00000219084 KRTAP9-6A8MVA2 160 aa1.17□□□□□ -2.22
CHD9-201ENST00000219084 LCE1DQ5T752 114 aa1.17□□□□□ -2.22
CHD9-201ENST00000219084 KRTAP6-2Q3LI66 62 aa1.17□□□□□ -2.22
CHD9-201ENST00000219084 LCE1FQ5T754 118 aa1.17□□□□□ -2.22
CHD9-201ENST00000219084 KRTAP4-3Q9BYR4 195 aa1.16□□□□□ -2.22
CHD9-201ENST00000219084 GPR98Q8WXG9 6306 aa1.16□□□□□ -2.22
CHD9-201ENST00000219084 KRTAP6-1Q3LI64 71 aa1.15□□□□□ -2.23
CHD9-201ENST00000219084 KRTAP9-9Q9BYP9 154 aa1.15□□□□□ -2.23
CHD9-201ENST00000219084 LCE1BQ5T7P3 118 aa1.14□□□□□ -2.23
CHD9-201ENST00000219084 MACF1Q9UPN3 7388 aaKnown RBP1.14□□□□□ -2.23
CHD9-201ENST00000219084 KMT2DO14686 5537 aa1.13□□□□□ -2.23
CHD9-201ENST00000219084 AHNAK2Q8IVF2 5795 aa1.11□□□□□ -2.23
CHD9-201ENST00000219084 SYNE2Q8WXH0 6885 aaKnown RBP1.1□□□□□ -2.23
CHD9-201ENST00000219084 USH2AO75445 5202 aa1.1□□□□□ -2.23
CHD9-201ENST00000219084 KRTAP4-9Q9BYQ8 210 aa1.09□□□□□ -2.23
CHD9-201ENST00000219084 DSTQ03001 7570 aaKnown RBP1.08□□□□□ -2.24
CHD9-201ENST00000219084 LCE1CQ5T751 118 aa1.08□□□□□ -2.24
CHD9-201ENST00000219084 LCE1EQ5T753 118 aa1.08□□□□□ -2.24
CHD9-201ENST00000219084 AHNAKQ09666 5890 aaKnown RBP1.08□□□□□ -2.24
CHD9-201ENST00000219084 FSIP2Q5CZC0 6907 aa1.06□□□□□ -2.24
CHD9-201ENST00000219084 KRTAP5-9P26371 169 aa1.05□□□□□ -2.24
CHD9-201ENST00000219084 FCGBPQ9Y6R7 5405 aaPredicted RBP1.05□□□□□ -2.24
CHD9-201ENST00000219084 MUC2Q02817 5179 aa1.05□□□□□ -2.24
CHD9-201ENST00000219084 KRTAP5-5Q701N2 237 aaPredicted RBP1.04□□□□□ -2.24
CHD9-201ENST00000219084 MUC5ACP98088 5654 aa1.04□□□□□ -2.24
CHD9-201ENST00000219084 KRTAP5-6Q6L8G9 129 aaPredicted RBP1□□□□□ -2.25
CHD9-201ENST00000219084 OBSCNQ5VST9 7968 aa0.98□□□□□ -2.25
CHD9-201ENST00000219084 NEBP20929 6669 aa0.97□□□□□ -2.25
CHD9-201ENST00000219084 KRTAP5-4Q6L8H1 288 aa0.95□□□□□ -2.26
CHD9-201ENST00000219084 KRTAP20-2Q3LI61 65 aa0.94□□□□□ -2.26
CHD9-201ENST00000219084 MUC19Q7Z5P9 8384 aa0.91□□□□□ -2.26
CHD9-201ENST00000219084 KRTAP5-1Q6L8H4 278 aa0.89□□□□□ -2.27
CHD9-201ENST00000219084 KRTAP4-11Q9BYQ6 195 aa0.89□□□□□ -2.27
CHD9-201ENST00000219084 KRTAP4-6Q9BYQ5 205 aa0.89□□□□□ -2.27
CHD9-201ENST00000219084 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
CHD9-201ENST00000219084 KRTAP5-3Q6L8H2 238 aa0.82□□□□□ -2.28
CHD9-201ENST00000219084 KRTAP5-7Q6L8G8 165 aa0.78□□□□□ -2.28
CHD9-201ENST00000219084 KRTAP5-10Q6L8G5 202 aa0.78□□□□□ -2.28
CHD9-201ENST00000219084 KRTAP4-2Q9BYR5 136 aa0.78□□□□□ -2.29
CHD9-201ENST00000219084 KRTAP5-8O75690 187 aa0.76□□□□□ -2.29
CHD9-201ENST00000219084 PHGR1C9JFL3 82 aa0.75□□□□□ -2.29
CHD9-201ENST00000219084 KRTAP4-4Q9BYR3 166 aa0.74□□□□□ -2.29
CHD9-201ENST00000219084 KRTAP4-12Q9BQ66 201 aa0.73□□□□□ -2.29
CHD9-201ENST00000219084 KRTAP5-11Q6L8G4 156 aa0.7□□□□□ -2.3
CHD9-201ENST00000219084 KRTAP21-2Q3LI59 83 aa0.63□□□□□ -2.31
CHD9-201ENST00000219084 MUC16Q8WXI7 14507 aa0.49□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 29.3 ms