RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 NISCHQ9Y2I1 1504 aa7.55□□□□□ -1.2
CHD9-201ENST00000219084 PELP1Q8IZL8 1130 aaKnown RBP7.13□□□□□ -1.27
CHD9-201ENST00000219084 DCAF8L2P0C7V8 631 aa7.08□□□□□ -1.28
CHD9-201ENST00000219084 TTBK1Q5TCY1 1321 aaPredicted RBP7□□□□□ -1.29
CHD9-201ENST00000219084 MYT1Q01538 1121 aa6.94□□□□□ -1.3
CHD9-201ENST00000219084 SUPT5HO00267 1087 aaKnown RBP6.92□□□□□ -1.3
CHD9-201ENST00000219084 ZEB1P37275 1124 aaPredicted RBP6.91□□□□□ -1.3
CHD9-201ENST00000219084 APLP2Q06481 763 aa6.81□□□□□ -1.32
CHD9-201ENST00000219084 SHROOM4Q9ULL8 1493 aa6.79□□□□□ -1.32
CHD9-201ENST00000219084 CENPBP07199 599 aaPredicted RBP6.78□□□□□ -1.32
CHD9-201ENST00000219084 FAM9AQ8IZU1 332 aaPredicted RBP6.76□□□□□ -1.33
CHD9-201ENST00000219084 CCER1Q8TC90 406 aaPredicted RBP6.76□□□□□ -1.33
CHD9-201ENST00000219084 PCGF6Q9BYE7 350 aa6.62□□□□□ -1.35
CHD9-201ENST00000219084 CCDC180Q9P1Z9 1646 aa6.6□□□□□ -1.35
CHD9-201ENST00000219084 ERICH6Q7L0X2 663 aa6.6□□□□□ -1.35
CHD9-201ENST00000219084 TRIM41Q8WV44 630 aa6.58□□□□□ -1.36
CHD9-201ENST00000219084 NEFLP07196 543 aa6.56□□□□□ -1.36
CHD9-201ENST00000219084 TRIM26Q12899 539 aaPredicted RBP6.56□□□□□ -1.36
CHD9-201ENST00000219084 YTHDC1Q96MU7 727 aaKnown RBP6.5□□□□□ -1.37
CHD9-201ENST00000219084 HRCP23327 699 aa6.49□□□□□ -1.37
CHD9-201ENST00000219084 UBTFP17480 764 aaKnown RBP6.44□□□□□ -1.38
CHD9-201ENST00000219084 EHMT2Q96KQ7 1210 aa6.42□□□□□ -1.38
CHD9-201ENST00000219084 CLSPNQ9HAW4 1339 aa6.4□□□□□ -1.39
CHD9-201ENST00000219084 DAXXQ9UER7 740 aaPredicted RBP6.36□□□□□ -1.39
CHD9-201ENST00000219084 DCAF1Q9Y4B6 1507 aa6.34□□□□□ -1.39
CHD9-201ENST00000219084 CHIC1Q5VXU3 224 aa6.33□□□□□ -1.4
CHD9-201ENST00000219084 ZCCHC6Q5VYS8 1495 aaKnown RBP6.31□□□□□ -1.4
CHD9-201ENST00000219084 DIEXFQ68CQ4 756 aaKnown RBP6.27□□□□□ -1.41
CHD9-201ENST00000219084 ATP1B4Q9UN42 357 aaPredicted RBP6.27□□□□□ -1.41
CHD9-201ENST00000219084 RTL5Q5HYW3 569 aaPredicted RBP6.25□□□□□ -1.41
CHD9-201ENST00000219084 MYT1LQ9UL68 1186 aa6.24□□□□□ -1.41
CHD9-201ENST00000219084 RANGAP1P46060 587 aaPredicted RBP6.21□□□□□ -1.41
CHD9-201ENST00000219084 ZNF316A6NFI3 1004 aaPredicted RBP6.2□□□□□ -1.42
CHD9-201ENST00000219084 ACIN1Q9UKV3 1341 aaKnown RBP6.2□□□□□ -1.42
CHD9-201ENST00000219084 SCRIBQ14160 1630 aa6.2□□□□□ -1.42
CHD9-201ENST00000219084 NACADO15069 1562 aa6.17□□□□□ -1.42
CHD9-201ENST00000219084 RB1CC1Q8TDY2 1594 aa6.16□□□□□ -1.42
CHD9-201ENST00000219084 EEA1Q15075 1411 aa6.16□□□□□ -1.42
CHD9-201ENST00000219084 ANP32CO43423 234 aa6.16□□□□□ -1.42
CHD9-201ENST00000219084 CDK11AQ9UQ88 783 aaPredicted RBP6.15□□□□□ -1.42
CHD9-201ENST00000219084 LOC105371045A0A1W2PR82 267 aa6.14□□□□□ -1.43
CHD9-201ENST00000219084 HNRNPUL2Q1KMD3 747 aaKnown RBP6.13□□□□□ -1.43
CHD9-201ENST00000219084 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.11□□□□□ -1.43
CHD9-201ENST00000219084 GTF3C3Q9Y5Q9 886 aa6.09□□□□□ -1.44
CHD9-201ENST00000219084 ANP32AP39687 249 aaKnown RBP6.08□□□□□ -1.44
CHD9-201ENST00000219084 PPARGC1BQ86YN6 1023 aaKnown RBP6.08□□□□□ -1.44
CHD9-201ENST00000219084 ITGAEP38570 1179 aa6.08□□□□□ -1.44
CHD9-201ENST00000219084 ABCC9O60706 1549 aa6.07□□□□□ -1.44
CHD9-201ENST00000219084 FAM50AQ14320 339 aaKnown RBP6.07□□□□□ -1.44
CHD9-201ENST00000219084 ZBTB47Q9UFB7 747 aaPredicted RBP6.05□□□□□ -1.44
CHD9-201ENST00000219084 GOLGA3Q08378 1498 aa6.04□□□□□ -1.44
CHD9-201ENST00000219084 CSRNP3Q8WYN3 585 aa6.04□□□□□ -1.44
CHD9-201ENST00000219084 BAZ1AQ9NRL2 1556 aaPredicted RBP6.04□□□□□ -1.44
CHD9-201ENST00000219084 POLR3GLQ9BT43 218 aa6.04□□□□□ -1.44
CHD9-201ENST00000219084 GLIPR1L2Q4G1C9 344 aa6.03□□□□□ -1.44
CHD9-201ENST00000219084 NEFMP07197 916 aa6.02□□□□□ -1.45
CHD9-201ENST00000219084 TONSLQ96HA7 1378 aa6.02□□□□□ -1.45
CHD9-201ENST00000219084 TRIM52Q96A61 297 aa6.02□□□□□ -1.45
CHD9-201ENST00000219084 ANP32BQ92688 251 aaKnown RBP6.01□□□□□ -1.45
CHD9-201ENST00000219084 MYO15BQ96JP2 1530 aa6.01□□□□□ -1.45
CHD9-201ENST00000219084 EIF5BO60841 1220 aaKnown RBP6□□□□□ -1.45
CHD9-201ENST00000219084 CEP164Q9UPV0 1460 aa6□□□□□ -1.45
CHD9-201ENST00000219084 UPF2Q9HAU5 1272 aaKnown RBP5.99□□□□□ -1.45
CHD9-201ENST00000219084 RSF1Q96T23 1441 aaPredicted RBP5.99□□□□□ -1.45
CHD9-201ENST00000219084 CANXP27824 592 aaKnown RBP5.98□□□□□ -1.45
CHD9-201ENST00000219084 CLIP1P30622 1438 aa5.98□□□□□ -1.45
CHD9-201ENST00000219084 NEUROD1Q13562 356 aa5.97□□□□□ -1.45
CHD9-201ENST00000219084 ANP32EQ9BTT0 268 aa5.97□□□□□ -1.45
CHD9-201ENST00000219084 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.96□□□□□ -1.45
CHD9-201ENST00000219084 SLC4A1APQ9BWU0 796 aaKnown RBP5.95□□□□□ -1.46
CHD9-201ENST00000219084 CEP162Q5TB80 1403 aa5.94□□□□□ -1.46
CHD9-201ENST00000219084 TNIKQ9UKE5 1360 aa5.94□□□□□ -1.46
CHD9-201ENST00000219084 DDRGK1Q96HY6 314 aa5.93□□□□□ -1.46
CHD9-201ENST00000219084 BAZ1BQ9UIG0 1483 aaKnown RBP5.93□□□□□ -1.46
CHD9-201ENST00000219084 SMARCA2P51531 1590 aa5.93□□□□□ -1.46
CHD9-201ENST00000219084 FHAD1B1AJZ9 1412 aa5.92□□□□□ -1.46
CHD9-201ENST00000219084 KIF27Q86VH2 1401 aa5.91□□□□□ -1.46
CHD9-201ENST00000219084 WRNQ14191 1432 aaPredicted RBP eCLIP5.9□□□□□ -1.47
CHD9-201ENST00000219084 SLC24A1O60721 1099 aa5.89□□□□□ -1.47
CHD9-201ENST00000219084 TIMELESSQ9UNS1 1208 aa5.89□□□□□ -1.47
CHD9-201ENST00000219084 MTUS2Q5JR59 1369 aa5.89□□□□□ -1.47
CHD9-201ENST00000219084 BCANQ96GW7 911 aa5.89□□□□□ -1.47
CHD9-201ENST00000219084 BECN1Q14457 450 aa5.88□□□□□ -1.47
CHD9-201ENST00000219084 FKBP8Q14318 412 aa5.88□□□□□ -1.47
CHD9-201ENST00000219084 TOP2AP11388 1531 aaKnown RBP5.88□□□□□ -1.47
CHD9-201ENST00000219084 HSP90AA1P07900 732 aaKnown RBP5.88□□□□□ -1.47
CHD9-201ENST00000219084 HNRNPUQ00839 825 aaKnown RBP eCLIP5.87□□□□□ -1.47
CHD9-201ENST00000219084 ZNF326Q5BKZ1 582 aaKnown RBP5.87□□□□□ -1.47
CHD9-201ENST00000219084 CCDC136Q96JN2 1154 aa5.87□□□□□ -1.47
CHD9-201ENST00000219084 ERICH6BQ5W0A0 696 aa5.86□□□□□ -1.47
CHD9-201ENST00000219084 CDCA8Q53HL2 280 aa5.86□□□□□ -1.47
CHD9-201ENST00000219084 PABPN1Q86U42 306 aaKnown RBP eCLIP5.86□□□□□ -1.47
CHD9-201ENST00000219084 ARID4BQ4LE39 1312 aaPredicted RBP5.85□□□□□ -1.47
CHD9-201ENST00000219084 TMC1Q8TDI8 760 aa5.85□□□□□ -1.47
CHD9-201ENST00000219084 EIF4G2P78344 907 aaKnown RBP eCLIP5.85□□□□□ -1.47
CHD9-201ENST00000219084 WDR43Q15061 677 aaKnown RBP eCLIP5.84□□□□□ -1.47
CHD9-201ENST00000219084 CHMP4BQ9H444 224 aaKnown RBP5.84□□□□□ -1.48
CHD9-201ENST00000219084 MYH16Q9H6N6 1097 aa5.84□□□□□ -1.48
CHD9-201ENST00000219084 PPM1GO15355 546 aaPredicted RBP5.83□□□□□ -1.48
CHD9-201ENST00000219084 GOLGA6L22H0YM25 854 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms