RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 P01724 129 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 P01727 129 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 PolP10400 120 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm17324Q8C6J8 137 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 SNORCQ9CXL7 121 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Dpm2Q9Z324 84 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 F5O88783 2183 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm20517G3UVU6 152 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Zc2hc1aQ8BJH1 324 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 MalO09198 153 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 NdpP48744 131 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Map6d1Q14BB9 191 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Il19Q8CJ70 176 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tet1Q3URK3 2007 aaKnown RBP12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Zfyve26Q5DU37 2529 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Dopey2Q3UHQ6 2295 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Igll1P20764 209 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 CtsgP28293 261 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Klf13Q9JJZ6 289 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ighv1-80A0A075B5Y3 117 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm7849D3YX03 116 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm10521E9PZK0 135 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gkn1Q9CR36 201 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Flg2Q2VIS4 2362 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Plscr4P58196 326 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Rpl36aP83882 106 aaKnown RBP12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav7d-3Q5R1I1 112 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Minos1Q7TNS2 76 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ighv1-16A0A075B5U1 98 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav12d-3A0A075B6A4 115 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Wt1P22561 449 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm5089A1L3C8 106 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Zfp248Q640N4 576 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ifi27l2aQ8R412 90 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Pradc1Q9D9N8 188 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav6n-6A0A075B6B2 114 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Defa28D3Z1V9 94 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Defa26Q3L180 93 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Defa25Q5G864 92 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 RhohQ9D3G9 191 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Lrp4Q8VI56 1905 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav14-3A0A075B607 120 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav14n-2A0A0G2JDF5 121 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Zfp36l1P23950 338 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tal2Q62282 108 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Sp5Q9JHX2 398 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Nxph4G3X9N5 304 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Klk1b4P00757 256 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 P01812 117 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tln1P26039 2541 aaKnown RBP12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15128A2ADW8 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15080A2BI02 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15093A2BI72 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15217A2CG07 155 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Luzp4B1AV09 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15107B1B0X0 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15097E9QA14 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Sigmar1O55242 223 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ang6Q5GAN0 147 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15085Q62012 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 ApomQ9Z1R3 190 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 P03985 172 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Pcnx2Q5DU28 2122 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm29423A0A087WRM1 55 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Igkv4-71A0A0G2JEH0 117 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ighv1-62-3P01754 117 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tctex1d4Q8CDY7 219 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gemin7Q9CWY4 129 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ncor2Q9WU42 2472 aaKnown RBP12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ly86O88188 162 aa12.27□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P01728 117 aa12.27□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 5730522E02RikQ5SP45 163 aa12.27□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Atp6v0bQ91V37 205 aa12.27□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm33815A0A087WNV3 176 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 CckP09240 115 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Trav6-6A0A075B603 114 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tomm6Q9CQN3 74 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Them7Q9DCP4 223 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm15127B1AVZ5 449 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm15091B1AZM2 449 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 KprpB2RUR4 657 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P01793 123 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Prr3Q811B5 190 aaKnown RBP12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Igkv20-101-2A0A0G2JDU3 113 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm10767Q3TQP0 103 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv1-39A0A075B5V5 117 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Nsun4C4P6S0 806 aaKnown RBP12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm9949Q8C9F4 104 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ca1P13634 261 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Defa4P28311 92 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tex26Q0VB26 296 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Defb26Q30KN7 186 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv1-58A0A075B5W9 117 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm26558Q8BLW8 286 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Nav2E9Q842 2432 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm6040Q4QY32 63 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P01659 112 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P01811 117 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Cox6b1P56391 86 aaKnown RBP12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tmem86bQ497J1 226 aa12.23□□□□□ -0.45
Retrieved 100 of 22,080 RNA–protein pairs in 46.5 ms