Protein–RNA interactions for Protein: A0A075B6A4

Trav12d-3, T cell receptor alpha variable 12D-3 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav12d-3A0A075B6A4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trav12d-3A0A075B6A4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trav12d-3A0A075B6A4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
Trav12d-3A0A075B6A4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Trav12d-3A0A075B6A4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Trav12d-3A0A075B6A4 Psd-208ENSMUST00000224556 2034 ntBASIC24.83■■□□□ 1.57
Trav12d-3A0A075B6A4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trav12d-3A0A075B6A4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trav12d-3A0A075B6A4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Trav12d-3A0A075B6A4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Trav12d-3A0A075B6A4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav12d-3A0A075B6A4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Trav12d-3A0A075B6A4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav12d-3A0A075B6A4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
Trav12d-3A0A075B6A4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trav12d-3A0A075B6A4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Trav12d-3A0A075B6A4 Gm25239-201ENSMUST00000174915 86 ntBASIC23.19■■□□□ 1.3
Trav12d-3A0A075B6A4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trav12d-3A0A075B6A4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav12d-3A0A075B6A4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Trav12d-3A0A075B6A4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav12d-3A0A075B6A4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav12d-3A0A075B6A4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trav12d-3A0A075B6A4 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.62■■□□□ 1.21
Trav12d-3A0A075B6A4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav12d-3A0A075B6A4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.48■■□□□ 1.19
Trav12d-3A0A075B6A4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trav12d-3A0A075B6A4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.46■■□□□ 1.19
Trav12d-3A0A075B6A4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav12d-3A0A075B6A4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav12d-3A0A075B6A4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.42■■□□□ 1.18
Trav12d-3A0A075B6A4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trav12d-3A0A075B6A4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trav12d-3A0A075B6A4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Trav12d-3A0A075B6A4 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav12d-3A0A075B6A4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Trav12d-3A0A075B6A4 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.95■■□□□ 1.1
Trav12d-3A0A075B6A4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trav12d-3A0A075B6A4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav12d-3A0A075B6A4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
Trav12d-3A0A075B6A4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trav12d-3A0A075B6A4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav12d-3A0A075B6A4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.72■■□□□ 1.07
Trav12d-3A0A075B6A4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Trav12d-3A0A075B6A4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trav12d-3A0A075B6A4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.63■■□□□ 1.05
Trav12d-3A0A075B6A4 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trav12d-3A0A075B6A4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav12d-3A0A075B6A4 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav12d-3A0A075B6A4 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav12d-3A0A075B6A4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Trav12d-3A0A075B6A4 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Trav12d-3A0A075B6A4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav12d-3A0A075B6A4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Trav12d-3A0A075B6A4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trav12d-3A0A075B6A4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav12d-3A0A075B6A4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Trav12d-3A0A075B6A4 Gm15042-201ENSMUST00000120212 883 ntBASIC21.4■■□□□ 1.02
Trav12d-3A0A075B6A4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav12d-3A0A075B6A4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav12d-3A0A075B6A4 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav12d-3A0A075B6A4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.35■■□□□ 1.01
Trav12d-3A0A075B6A4 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.35■■□□□ 1.01
Trav12d-3A0A075B6A4 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.34■■□□□ 1.01
Trav12d-3A0A075B6A4 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.28■■□□□ 1
Trav12d-3A0A075B6A4 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trav12d-3A0A075B6A4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav12d-3A0A075B6A4 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav12d-3A0A075B6A4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav12d-3A0A075B6A4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav12d-3A0A075B6A4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav12d-3A0A075B6A4 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav12d-3A0A075B6A4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav12d-3A0A075B6A4 Gm15045-201ENSMUST00000117359 883 ntBASIC21.14■□□□□ 0.97
Trav12d-3A0A075B6A4 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav12d-3A0A075B6A4 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav12d-3A0A075B6A4 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav12d-3A0A075B6A4 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav12d-3A0A075B6A4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav12d-3A0A075B6A4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.04■□□□□ 0.96
Trav12d-3A0A075B6A4 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trav12d-3A0A075B6A4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav12d-3A0A075B6A4 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav12d-3A0A075B6A4 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trav12d-3A0A075B6A4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav12d-3A0A075B6A4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trav12d-3A0A075B6A4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav12d-3A0A075B6A4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav12d-3A0A075B6A4 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav12d-3A0A075B6A4 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Trav12d-3A0A075B6A4 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trav12d-3A0A075B6A4 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trav12d-3A0A075B6A4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trav12d-3A0A075B6A4 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
Trav12d-3A0A075B6A4 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trav12d-3A0A075B6A4 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.7■□□□□ 0.9
Trav12d-3A0A075B6A4 Zxda-201ENSMUST00000117281 2621 ntBASIC20.67■□□□□ 0.9
Trav12d-3A0A075B6A4 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trav12d-3A0A075B6A4 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trav12d-3A0A075B6A4 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms