RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 SPINK7P58062 85 aa9.11□□□□□ -0.95
PHGDH-234ENST00000642041 LCE2CQ5TA81 110 aa9.08□□□□□ -0.96
PHGDH-234ENST00000642041 COA5Q86WW8 74 aa9.05□□□□□ -0.96
PHGDH-234ENST00000642041 SEC61BP60468 96 aaKnown RBP9.04□□□□□ -0.96
PHGDH-234ENST00000642041 CHKB-CPT1BH3BT56 60 aa9.02□□□□□ -0.97
PHGDH-234ENST00000642041 LORP23490 312 aaPredicted RBP9.02□□□□□ -0.97
PHGDH-234ENST00000642041 MT1HP80294 61 aa9.02□□□□□ -0.97
PHGDH-234ENST00000642041 SPTSSBQ8NFR3 76 aa9.02□□□□□ -0.97
PHGDH-234ENST00000642041 KRTAP10-6P60371 365 aaPredicted RBP8.98□□□□□ -0.97
PHGDH-234ENST00000642041 Q1T7F1 81 aa8.98□□□□□ -0.97
PHGDH-234ENST00000642041 COX6B2Q6YFQ2 88 aa8.96□□□□□ -0.98
PHGDH-234ENST00000642041 KRTAP19-2Q3LHN2 52 aa8.95□□□□□ -0.98
PHGDH-234ENST00000642041 C4orf26Q17RF5 130 aa8.91□□□□□ -0.98
PHGDH-234ENST00000642041 SSPOA2VEC9 5147 aa8.9□□□□□ -0.98
PHGDH-234ENST00000642041 RBM12B-AS1Q9P1G2 102 aa8.88□□□□□ -0.99
PHGDH-234ENST00000642041 LINC01558Q9Y6Z2 57 aa8.84□□□□□ -0.99
PHGDH-234ENST00000642041 PRR15LQ9BU68 103 aa8.83□□□□□ -1
PHGDH-234ENST00000642041 USH2AO75445 5202 aa8.83□□□□□ -1
PHGDH-234ENST00000642041 MPLKIPQ8TAP9 179 aa8.81□□□□□ -1
PHGDH-234ENST00000642041 FCGBPQ9Y6R7 5405 aaPredicted RBP8.79□□□□□ -1
PHGDH-234ENST00000642041 M0R2T5 61 aa8.77□□□□□ -1.01
PHGDH-234ENST00000642041 SEC61GP60059 68 aa8.75□□□□□ -1.01
PHGDH-234ENST00000642041 FLGP20930 4061 aaPredicted RBP8.75□□□□□ -1.01
PHGDH-234ENST00000642041 H1FX-AS1Q4G0G2 97 aa8.73□□□□□ -1.01
PHGDH-234ENST00000642041 KRTAP3-1Q9BYR8 98 aa8.73□□□□□ -1.01
PHGDH-234ENST00000642041 A0A1B0GU69 56 aa8.68□□□□□ -1.02
PHGDH-234ENST00000642041 SYNE2Q8WXH0 6885 aaKnown RBP8.66□□□□□ -1.02
PHGDH-234ENST00000642041 S4R3F8 94 aa8.65□□□□□ -1.02
PHGDH-234ENST00000642041 MACF1Q9UPN3 7388 aaKnown RBP8.63□□□□□ -1.03
PHGDH-234ENST00000642041 PSPHP1O15172 72 aa8.61□□□□□ -1.03
PHGDH-234ENST00000642041 Q5VV11 94 aa8.57□□□□□ -1.04
PHGDH-234ENST00000642041 CSAG1Q6PB30 78 aa8.55□□□□□ -1.04
PHGDH-234ENST00000642041 KRTAP19-1Q8IUB9 90 aa8.53□□□□□ -1.04
PHGDH-234ENST00000642041 LCA10Q71F78 164 aa8.52□□□□□ -1.05
PHGDH-234ENST00000642041 UQCR11O14957 56 aa8.5□□□□□ -1.05
PHGDH-234ENST00000642041 A6NED7 52 aa8.49□□□□□ -1.05
PHGDH-234ENST00000642041 KRTAP3-3Q9BYR6 98 aa8.44□□□□□ -1.06
PHGDH-234ENST00000642041 BRK1Q8WUW1 75 aa8.42□□□□□ -1.06
PHGDH-234ENST00000642041 KRTAP9-8Q9BYQ0 159 aa8.42□□□□□ -1.06
PHGDH-234ENST00000642041 H0YAA0 97 aa8.41□□□□□ -1.06
PHGDH-234ENST00000642041 PRO0628Q9UI54 55 aa8.41□□□□□ -1.06
PHGDH-234ENST00000642041 CDC42SE1Q9NRR8 79 aa8.4□□□□□ -1.06
PHGDH-234ENST00000642041 A0A1B0GU33 70 aa8.36□□□□□ -1.07
PHGDH-234ENST00000642041 KRTAP6-3Q3LI67 103 aa8.34□□□□□ -1.07
PHGDH-234ENST00000642041 SPATA8Q6RVD6 105 aa8.34□□□□□ -1.07
PHGDH-234ENST00000642041 MIR22HGQ0VDD5 57 aa8.33□□□□□ -1.08
PHGDH-234ENST00000642041 LCE2BO14633 110 aa8.32□□□□□ -1.08
PHGDH-234ENST00000642041 NEBP20929 6669 aa8.23□□□□□ -1.09
PHGDH-234ENST00000642041 M0QZ58 72 aa8.22□□□□□ -1.09
PHGDH-234ENST00000642041 ADM2Q7Z4H4 148 aa8.2□□□□□ -1.1
PHGDH-234ENST00000642041 MT2AP02795 61 aa8.19□□□□□ -1.1
PHGDH-234ENST00000642041 KRTAP19-6Q3LI70 58 aa8.19□□□□□ -1.1
PHGDH-234ENST00000642041 KRTAP9-3Q9BYQ3 159 aa8.18□□□□□ -1.1
PHGDH-234ENST00000642041 K7ERS5 55 aa8.17□□□□□ -1.1
PHGDH-234ENST00000642041 KRTAP3-2Q9BYR7 98 aa8.17□□□□□ -1.1
PHGDH-234ENST00000642041 MT1FP04733 61 aa8.13□□□□□ -1.11
PHGDH-234ENST00000642041 KRTAP20-1Q3LI63 56 aa8.11□□□□□ -1.11
PHGDH-234ENST00000642041 CRIPTQ9P021 101 aa8.11□□□□□ -1.11
PHGDH-234ENST00000642041 MUC12Q9UKN1 5478 aa8.08□□□□□ -1.12
PHGDH-234ENST00000642041 P0C880 135 aa8.06□□□□□ -1.12
PHGDH-234ENST00000642041 KRTAP10-10P60014 251 aa8.06□□□□□ -1.12
PHGDH-234ENST00000642041 PMAIP1Q13794 54 aa8.04□□□□□ -1.12
PHGDH-234ENST00000642041 R4GN34 69 aa8.03□□□□□ -1.12
PHGDH-234ENST00000642041 A8MU10 97 aa7.93□□□□□ -1.14
PHGDH-234ENST00000642041 SVIPQ8NHG7 77 aa7.91□□□□□ -1.14
PHGDH-234ENST00000642041 A6NN06 94 aa7.88□□□□□ -1.15
PHGDH-234ENST00000642041 KRTAP13-4Q3LI77 160 aa7.86□□□□□ -1.15
PHGDH-234ENST00000642041 A0A0D9SG42 100 aa7.81□□□□□ -1.16
PHGDH-234ENST00000642041 KTN1-AS1Q86SY8 53 aa7.76□□□□□ -1.17
PHGDH-234ENST00000642041 SPINT4Q6UDR6 99 aa7.73□□□□□ -1.17
PHGDH-234ENST00000642041 MDN1Q9NU22 5596 aa7.73□□□□□ -1.17
PHGDH-234ENST00000642041 KMT2DO14686 5537 aa7.71□□□□□ -1.17
PHGDH-234ENST00000642041 KRTAP12-1P59990 96 aa7.71□□□□□ -1.18
PHGDH-234ENST00000642041 LINC01554Q52M75 96 aa7.7□□□□□ -1.18
PHGDH-234ENST00000642041 KRTAP2-3P0C7H8 128 aa7.69□□□□□ -1.18
PHGDH-234ENST00000642041 KRTAP2-4Q9BYR9 128 aa7.69□□□□□ -1.18
PHGDH-234ENST00000642041 SPRR2GQ9BYE4 73 aa7.68□□□□□ -1.18
PHGDH-234ENST00000642041 ROMO1P60602 79 aa7.64□□□□□ -1.19
PHGDH-234ENST00000642041 KRTAP12-2P59991 146 aa7.63□□□□□ -1.19
PHGDH-234ENST00000642041 KRTAP5-9P26371 169 aa7.61□□□□□ -1.19
PHGDH-234ENST00000642041 PLAC4Q8WY50 150 aa7.57□□□□□ -1.2
PHGDH-234ENST00000642041 CAMK2N1Q7Z7J9 78 aa7.53□□□□□ -1.2
PHGDH-234ENST00000642041 KRTAP19-8Q3LI54 63 aa7.45□□□□□ -1.22
PHGDH-234ENST00000642041 KRTAP2-2Q9BYT5 123 aa7.4□□□□□ -1.22
PHGDH-234ENST00000642041 KRTAP2-1Q9BYU5 128 aa7.4□□□□□ -1.22
PHGDH-234ENST00000642041 KRTAP25-1Q3LHN0 102 aa7.36□□□□□ -1.23
PHGDH-234ENST00000642041 GPR98Q8WXG9 6306 aa7.31□□□□□ -1.24
PHGDH-234ENST00000642041 SPRR2EP22531 72 aa7.26□□□□□ -1.25
PHGDH-234ENST00000642041 SPRR2BP35325 72 aa7.26□□□□□ -1.25
PHGDH-234ENST00000642041 SPRR2AP35326 72 aa7.26□□□□□ -1.25
PHGDH-234ENST00000642041 KRTAP10-5P60370 271 aa7.26□□□□□ -1.25
PHGDH-234ENST00000642041 MT1BP07438 61 aa7.25□□□□□ -1.25
PHGDH-234ENST00000642041 TNP1P09430 55 aa7.25□□□□□ -1.25
PHGDH-234ENST00000642041 PRAC1Q96KF2 57 aa7.25□□□□□ -1.25
PHGDH-234ENST00000642041 C10orf95Q9H7T3 257 aa7.25□□□□□ -1.25
PHGDH-234ENST00000642041 PP632Q6XCG6 107 aa7.24□□□□□ -1.25
PHGDH-234ENST00000642041 PRO2289Q9P1D8 64 aa7.24□□□□□ -1.25
PHGDH-234ENST00000642041 KRTAP23-1A1A580 65 aa7.23□□□□□ -1.25
PHGDH-234ENST00000642041 SPRR2FQ96RM1 72 aa7.16□□□□□ -1.26
PHGDH-234ENST00000642041 LCE1AQ5T7P2 110 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms