RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 TPRXLQ17RH7 258 aa9.69□□□□□ -0.86
CLN3-263ENST00000637871 A0A1B0GU69 56 aa9.68□□□□□ -0.86
CLN3-263ENST00000637871 XP32Q5T750 250 aa9.67□□□□□ -0.86
CLN3-263ENST00000637871 COX6B2Q6YFQ2 88 aa9.67□□□□□ -0.86
CLN3-263ENST00000637871 CDC42SE1Q9NRR8 79 aa9.64□□□□□ -0.87
CLN3-263ENST00000637871 SEC61GP60059 68 aa9.59□□□□□ -0.87
CLN3-263ENST00000637871 KRTAP3-1Q9BYR8 98 aa9.59□□□□□ -0.87
CLN3-263ENST00000637871 LCA10Q71F78 164 aa9.55□□□□□ -0.88
CLN3-263ENST00000637871 MUC17Q685J3 4493 aa9.51□□□□□ -0.89
CLN3-263ENST00000637871 UQCR11O14957 56 aa9.5□□□□□ -0.89
CLN3-263ENST00000637871 RNF213Q63HN8 5207 aa9.49□□□□□ -0.89
CLN3-263ENST00000637871 SPATA8Q6RVD6 105 aa9.45□□□□□ -0.9
CLN3-263ENST00000637871 MUC2Q02817 5179 aa9.4□□□□□ -0.9
CLN3-263ENST00000637871 A8MU10 97 aa9.39□□□□□ -0.91
CLN3-263ENST00000637871 MIR22HGQ0VDD5 57 aa9.39□□□□□ -0.91
CLN3-263ENST00000637871 PMAIP1Q13794 54 aa9.39□□□□□ -0.91
CLN3-263ENST00000637871 SEC61BP60468 96 aaKnown RBP9.36□□□□□ -0.91
CLN3-263ENST00000637871 KRTAP4-1Q9BYQ7 146 aa9.33□□□□□ -0.92
CLN3-263ENST00000637871 H1FX-AS1Q4G0G2 97 aa9.31□□□□□ -0.92
CLN3-263ENST00000637871 RBM12B-AS1Q9P1G2 102 aa9.31□□□□□ -0.92
CLN3-263ENST00000637871 S4R3F8 94 aa9.31□□□□□ -0.92
CLN3-263ENST00000637871 A0A1B0GU33 70 aa9.27□□□□□ -0.93
CLN3-263ENST00000637871 A6NN06 94 aa9.26□□□□□ -0.93
CLN3-263ENST00000637871 KRTAP3-3Q9BYR6 98 aa9.23□□□□□ -0.93
CLN3-263ENST00000637871 KTN1-AS1Q86SY8 53 aa9.14□□□□□ -0.95
CLN3-263ENST00000637871 H0YAA0 97 aa9.1□□□□□ -0.95
CLN3-263ENST00000637871 CSAG1Q6PB30 78 aa9.1□□□□□ -0.95
CLN3-263ENST00000637871 FAT4Q6V0I7 4981 aa9.08□□□□□ -0.96
CLN3-263ENST00000637871 KRTAP10-6P60371 365 aaPredicted RBP9.05□□□□□ -0.96
CLN3-263ENST00000637871 KRTAP3-2Q9BYR7 98 aa9.02□□□□□ -0.96
CLN3-263ENST00000637871 KRTAP19-2Q3LHN2 52 aa9.01□□□□□ -0.97
CLN3-263ENST00000637871 K7ERS5 55 aa9□□□□□ -0.97
CLN3-263ENST00000637871 LCE2CQ5TA81 110 aa8.95□□□□□ -0.98
CLN3-263ENST00000637871 ADM2Q7Z4H4 148 aa8.91□□□□□ -0.98
CLN3-263ENST00000637871 P0C880 135 aa8.87□□□□□ -0.99
CLN3-263ENST00000637871 M0QZ58 72 aa8.86□□□□□ -0.99
CLN3-263ENST00000637871 FLGP20930 4061 aaPredicted RBP8.84□□□□□ -1
CLN3-263ENST00000637871 LCE2AQ5TA79 106 aaPredicted RBP8.82□□□□□ -1
CLN3-263ENST00000637871 MT1HP80294 61 aa8.8□□□□□ -1
CLN3-263ENST00000637871 KRTAP13-4Q3LI77 160 aa8.79□□□□□ -1
CLN3-263ENST00000637871 A0A0D9SG42 100 aa8.69□□□□□ -1.02
CLN3-263ENST00000637871 M0R2T5 61 aa8.67□□□□□ -1.02
CLN3-263ENST00000637871 PRAC1Q96KF2 57 aa8.62□□□□□ -1.03
CLN3-263ENST00000637871 ROMO1P60602 79 aa8.61□□□□□ -1.03
CLN3-263ENST00000637871 R4GN34 69 aa8.61□□□□□ -1.03
CLN3-263ENST00000637871 KRTAP12-1P59990 96 aa8.56□□□□□ -1.04
CLN3-263ENST00000637871 LORP23490 312 aaPredicted RBP8.51□□□□□ -1.05
CLN3-263ENST00000637871 KRTAP12-2P59991 146 aa8.51□□□□□ -1.05
CLN3-263ENST00000637871 SPINT4Q6UDR6 99 aa8.51□□□□□ -1.05
CLN3-263ENST00000637871 CRIPTQ9P021 101 aa8.49□□□□□ -1.05
CLN3-263ENST00000637871 KRTAP25-1Q3LHN0 102 aa8.46□□□□□ -1.06
CLN3-263ENST00000637871 LINC01554Q52M75 96 aa8.39□□□□□ -1.07
CLN3-263ENST00000637871 KRTAP9-8Q9BYQ0 159 aa8.39□□□□□ -1.07
CLN3-263ENST00000637871 MT2AP02795 61 aa8.33□□□□□ -1.08
CLN3-263ENST00000637871 MT1FP04733 61 aa8.29□□□□□ -1.08
CLN3-263ENST00000637871 KRTAP10-10P60014 251 aa8.23□□□□□ -1.09
CLN3-263ENST00000637871 KRTAP9-2Q9BYQ4 174 aa8.21□□□□□ -1.1
CLN3-263ENST00000637871 LCE2DQ5TA82 110 aaPredicted RBP8.16□□□□□ -1.1
CLN3-263ENST00000637871 CAMK2N1Q7Z7J9 78 aa8.11□□□□□ -1.11
CLN3-263ENST00000637871 KRTAP9-3Q9BYQ3 159 aa8.11□□□□□ -1.11
CLN3-263ENST00000637871 SPRR2GQ9BYE4 73 aa8.1□□□□□ -1.11
CLN3-263ENST00000637871 C10orf95Q9H7T3 257 aa8.06□□□□□ -1.12
CLN3-263ENST00000637871 KRTAP9-6A0A140TA67 174 aa8.03□□□□□ -1.12
CLN3-263ENST00000637871 LCE2BO14633 110 aa8□□□□□ -1.13
CLN3-263ENST00000637871 FSIP2Q5CZC0 6907 aa7.99□□□□□ -1.13
CLN3-263ENST00000637871 USH2AO75445 5202 aa7.99□□□□□ -1.13
CLN3-263ENST00000637871 PLAC4Q8WY50 150 aa7.97□□□□□ -1.13
CLN3-263ENST00000637871 KRTAP19-1Q8IUB9 90 aa7.95□□□□□ -1.14
CLN3-263ENST00000637871 PP632Q6XCG6 107 aa7.93□□□□□ -1.14
CLN3-263ENST00000637871 KRTAP23-1A1A580 65 aa7.84□□□□□ -1.15
CLN3-263ENST00000637871 TNP1P09430 55 aa7.84□□□□□ -1.15
CLN3-263ENST00000637871 SSPOA2VEC9 5147 aa7.83□□□□□ -1.16
CLN3-263ENST00000637871 KRTAP19-8Q3LI54 63 aa7.82□□□□□ -1.16
CLN3-263ENST00000637871 CRCT1Q9UGL9 99 aa7.81□□□□□ -1.16
CLN3-263ENST00000637871 MT1BP07438 61 aa7.71□□□□□ -1.17
CLN3-263ENST00000637871 KRTAP19-6Q3LI70 58 aa7.58□□□□□ -1.2
CLN3-263ENST00000637871 KRTAP15-1Q3LI76 137 aa7.56□□□□□ -1.2
CLN3-263ENST00000637871 FCGBPQ9Y6R7 5405 aaPredicted RBP7.56□□□□□ -1.2
CLN3-263ENST00000637871 PRO2289Q9P1D8 64 aa7.47□□□□□ -1.21
CLN3-263ENST00000637871 KRTAP10-5P60370 271 aa7.45□□□□□ -1.22
CLN3-263ENST00000637871 MT1XP80297 61 aa7.45□□□□□ -1.22
CLN3-263ENST00000637871 LCE3AQ5TA76 89 aa7.3□□□□□ -1.24
CLN3-263ENST00000637871 KRTAP8-1Q8IUC2 63 aa7.28□□□□□ -1.24
CLN3-263ENST00000637871 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.27□□□□□ -1.25
CLN3-263ENST00000637871 MACF1Q9UPN3 7388 aaKnown RBP7.25□□□□□ -1.25
CLN3-263ENST00000637871 KRTAP10-12P60413 245 aa7.24□□□□□ -1.25
CLN3-263ENST00000637871 KRTAP9-7A8MTY7 169 aa7.16□□□□□ -1.26
CLN3-263ENST00000637871 LUZP6Q538Z0 58 aa7.14□□□□□ -1.27
CLN3-263ENST00000637871 KRTAP10-7P60409 375 aaPredicted RBP7.13□□□□□ -1.27
CLN3-263ENST00000637871 NDUFAF8A1L188 74 aa7.12□□□□□ -1.27
CLN3-263ENST00000637871 SYNE2Q8WXH0 6885 aaKnown RBP7.12□□□□□ -1.27
CLN3-263ENST00000637871 SPRR5A0A1B0GTR4 108 aa7.11□□□□□ -1.27
CLN3-263ENST00000637871 KRTAP12-3P60328 96 aa7.06□□□□□ -1.28
CLN3-263ENST00000637871 KMT2DO14686 5537 aa7.06□□□□□ -1.28
CLN3-263ENST00000637871 KRTAP4-8A0A0G2JLE6 195 aa6.93□□□□□ -1.3
CLN3-263ENST00000637871 H3BS24 57 aa6.93□□□□□ -1.3
CLN3-263ENST00000637871 KRTAP4-8Q9BYQ9 185 aa6.93□□□□□ -1.3
CLN3-263ENST00000637871 KRTAP6-3Q3LI67 103 aa6.88□□□□□ -1.31
CLN3-263ENST00000637871 KRTAP19-4Q3LI73 84 aa6.82□□□□□ -1.32
CLN3-263ENST00000637871 KRTAP19-5Q3LI72 72 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms