RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 SEC61BP60468 96 aaKnown RBP8.46□□□□□ -1.05
LDB3-208ENST00000623007 A6NED7 52 aa8.43□□□□□ -1.06
LDB3-208ENST00000623007 RBM12B-AS1Q9P1G2 102 aa8.4□□□□□ -1.06
LDB3-208ENST00000623007 CDC42SE1Q9NRR8 79 aa8.35□□□□□ -1.07
LDB3-208ENST00000623007 H1FX-AS1Q4G0G2 97 aa8.34□□□□□ -1.08
LDB3-208ENST00000623007 UQCR11O14957 56 aa8.32□□□□□ -1.08
LDB3-208ENST00000623007 S4R3F8 94 aa8.31□□□□□ -1.08
LDB3-208ENST00000623007 LCA10Q71F78 164 aa8.23□□□□□ -1.09
LDB3-208ENST00000623007 HMCN2Q8NDA2 5059 aa8.22□□□□□ -1.09
LDB3-208ENST00000623007 SPATA8Q6RVD6 105 aa8.21□□□□□ -1.1
LDB3-208ENST00000623007 MIR22HGQ0VDD5 57 aa8.19□□□□□ -1.1
LDB3-208ENST00000623007 KRTAP3-3Q9BYR6 98 aa8.18□□□□□ -1.1
LDB3-208ENST00000623007 A0A1B0GU33 70 aa8.14□□□□□ -1.11
LDB3-208ENST00000623007 CSAG1Q6PB30 78 aa8.14□□□□□ -1.11
LDB3-208ENST00000623007 UBR4Q5T4S7 5183 aa8.1□□□□□ -1.11
LDB3-208ENST00000623007 PMAIP1Q13794 54 aa8.06□□□□□ -1.12
LDB3-208ENST00000623007 LRP2P98164 4655 aa8.06□□□□□ -1.12
LDB3-208ENST00000623007 A8MU10 97 aa8.05□□□□□ -1.12
LDB3-208ENST00000623007 H0YAA0 97 aa8.05□□□□□ -1.12
LDB3-208ENST00000623007 LPAP08519 4548 aa8□□□□□ -1.13
LDB3-208ENST00000623007 KRTAP10-6P60371 365 aaPredicted RBP7.98□□□□□ -1.13
LDB3-208ENST00000623007 KRTAP4-1Q9BYQ7 146 aa7.98□□□□□ -1.13
LDB3-208ENST00000623007 KRTAP3-2Q9BYR7 98 aa7.94□□□□□ -1.14
LDB3-208ENST00000623007 A6NN06 94 aa7.93□□□□□ -1.14
LDB3-208ENST00000623007 K7ERS5 55 aa7.92□□□□□ -1.14
LDB3-208ENST00000623007 ADM2Q7Z4H4 148 aa7.92□□□□□ -1.14
LDB3-208ENST00000623007 MUC17Q685J3 4493 aa7.91□□□□□ -1.14
LDB3-208ENST00000623007 M0QZ58 72 aa7.88□□□□□ -1.15
LDB3-208ENST00000623007 KRTAP19-2Q3LHN2 52 aa7.86□□□□□ -1.15
LDB3-208ENST00000623007 RNF213Q63HN8 5207 aa7.85□□□□□ -1.15
LDB3-208ENST00000623007 P0C880 135 aa7.84□□□□□ -1.15
LDB3-208ENST00000623007 KTN1-AS1Q86SY8 53 aa7.83□□□□□ -1.16
LDB3-208ENST00000623007 KRTAP13-4Q3LI77 160 aa7.72□□□□□ -1.17
LDB3-208ENST00000623007 R4GN34 69 aa7.7□□□□□ -1.18
LDB3-208ENST00000623007 CRIPTQ9P021 101 aa7.66□□□□□ -1.18
LDB3-208ENST00000623007 A0A0D9SG42 100 aa7.65□□□□□ -1.18
LDB3-208ENST00000623007 MUC2Q02817 5179 aa7.63□□□□□ -1.19
LDB3-208ENST00000623007 LCE2CQ5TA81 110 aa7.58□□□□□ -1.2
LDB3-208ENST00000623007 KRTAP12-1P59990 96 aa7.54□□□□□ -1.2
LDB3-208ENST00000623007 FLGP20930 4061 aaPredicted RBP7.52□□□□□ -1.21
LDB3-208ENST00000623007 ROMO1P60602 79 aa7.51□□□□□ -1.21
LDB3-208ENST00000623007 SPINT4Q6UDR6 99 aa7.51□□□□□ -1.21
LDB3-208ENST00000623007 M0R2T5 61 aa7.49□□□□□ -1.21
LDB3-208ENST00000623007 KRTAP12-2P59991 146 aa7.48□□□□□ -1.21
LDB3-208ENST00000623007 MT1HP80294 61 aa7.46□□□□□ -1.22
LDB3-208ENST00000623007 LINC01554Q52M75 96 aa7.45□□□□□ -1.22
LDB3-208ENST00000623007 LORP23490 312 aaPredicted RBP7.42□□□□□ -1.22
LDB3-208ENST00000623007 LCE2AQ5TA79 106 aaPredicted RBP7.36□□□□□ -1.23
LDB3-208ENST00000623007 PRAC1Q96KF2 57 aa7.36□□□□□ -1.23
LDB3-208ENST00000623007 FAT4Q6V0I7 4981 aa7.35□□□□□ -1.23
LDB3-208ENST00000623007 KRTAP9-2Q9BYQ4 174 aa7.31□□□□□ -1.24
LDB3-208ENST00000623007 KRTAP25-1Q3LHN0 102 aa7.29□□□□□ -1.24
LDB3-208ENST00000623007 SPRR2GQ9BYE4 73 aa7.29□□□□□ -1.24
LDB3-208ENST00000623007 CAMK2N1Q7Z7J9 78 aa7.24□□□□□ -1.25
LDB3-208ENST00000623007 KRTAP10-10P60014 251 aa7.22□□□□□ -1.25
LDB3-208ENST00000623007 MT2AP02795 61 aa7.22□□□□□ -1.25
LDB3-208ENST00000623007 KRTAP9-8Q9BYQ0 159 aa7.21□□□□□ -1.26
LDB3-208ENST00000623007 PLAC4Q8WY50 150 aa7.17□□□□□ -1.26
LDB3-208ENST00000623007 MT1FP04733 61 aa7.15□□□□□ -1.27
LDB3-208ENST00000623007 KRTAP19-1Q8IUB9 90 aa7.14□□□□□ -1.27
LDB3-208ENST00000623007 KRTAP9-6A0A140TA67 174 aa7.09□□□□□ -1.27
LDB3-208ENST00000623007 C10orf95Q9H7T3 257 aa7.08□□□□□ -1.28
LDB3-208ENST00000623007 KRTAP19-8Q3LI54 63 aa7.05□□□□□ -1.28
LDB3-208ENST00000623007 PP632Q6XCG6 107 aa7□□□□□ -1.29
LDB3-208ENST00000623007 TNP1P09430 55 aa6.97□□□□□ -1.29
LDB3-208ENST00000623007 LCE2DQ5TA82 110 aaPredicted RBP6.97□□□□□ -1.29
LDB3-208ENST00000623007 KRTAP9-3Q9BYQ3 159 aa6.95□□□□□ -1.3
LDB3-208ENST00000623007 KRTAP23-1A1A580 65 aa6.93□□□□□ -1.3
LDB3-208ENST00000623007 FSIP2Q5CZC0 6907 aa6.86□□□□□ -1.31
LDB3-208ENST00000623007 CRCT1Q9UGL9 99 aa6.86□□□□□ -1.31
LDB3-208ENST00000623007 MT1BP07438 61 aa6.84□□□□□ -1.31
LDB3-208ENST00000623007 PRO2289Q9P1D8 64 aa6.81□□□□□ -1.32
LDB3-208ENST00000623007 KRTAP10-5P60370 271 aa6.68□□□□□ -1.34
LDB3-208ENST00000623007 MT1XP80297 61 aa6.68□□□□□ -1.34
LDB3-208ENST00000623007 LCE2BO14633 110 aa6.65□□□□□ -1.34
LDB3-208ENST00000623007 KRTAP10-12P60413 245 aa6.5□□□□□ -1.37
LDB3-208ENST00000623007 LCE3AQ5TA76 89 aa6.47□□□□□ -1.37
LDB3-208ENST00000623007 KRTAP15-1Q3LI76 137 aa6.46□□□□□ -1.37
LDB3-208ENST00000623007 KRTAP8-1Q8IUC2 63 aa6.46□□□□□ -1.37
LDB3-208ENST00000623007 USH2AO75445 5202 aa6.44□□□□□ -1.38
LDB3-208ENST00000623007 SSPOA2VEC9 5147 aa6.43□□□□□ -1.38
LDB3-208ENST00000623007 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.42□□□□□ -1.38
LDB3-208ENST00000623007 KRTAP10-7P60409 375 aaPredicted RBP6.38□□□□□ -1.39
LDB3-208ENST00000623007 KRTAP9-7A8MTY7 169 aa6.36□□□□□ -1.39
LDB3-208ENST00000623007 KRTAP19-6Q3LI70 58 aa6.31□□□□□ -1.4
LDB3-208ENST00000623007 FCGBPQ9Y6R7 5405 aaPredicted RBP6.29□□□□□ -1.4
LDB3-208ENST00000623007 KRTAP12-3P60328 96 aa6.29□□□□□ -1.4
LDB3-208ENST00000623007 LUZP6Q538Z0 58 aa6.21□□□□□ -1.42
LDB3-208ENST00000623007 SPRR5A0A1B0GTR4 108 aa6.17□□□□□ -1.42
LDB3-208ENST00000623007 KRTAP19-4Q3LI73 84 aa6.14□□□□□ -1.43
LDB3-208ENST00000623007 MACF1Q9UPN3 7388 aaKnown RBP6.11□□□□□ -1.43
LDB3-208ENST00000623007 KRTAP19-5Q3LI72 72 aa6.09□□□□□ -1.43
LDB3-208ENST00000623007 NDUFAF8A1L188 74 aa6.05□□□□□ -1.44
LDB3-208ENST00000623007 SYNE2Q8WXH0 6885 aaKnown RBP6.05□□□□□ -1.44
LDB3-208ENST00000623007 KRTAP4-8A0A0G2JLE6 195 aa6.02□□□□□ -1.45
LDB3-208ENST00000623007 KRTAP4-8Q9BYQ9 185 aa6.02□□□□□ -1.45
LDB3-208ENST00000623007 H3BS24 57 aa5.97□□□□□ -1.45
LDB3-208ENST00000623007 KRTAP19-7Q3SYF9 63 aa5.95□□□□□ -1.46
LDB3-208ENST00000623007 KRTAP6-3Q3LI67 103 aa5.91□□□□□ -1.46
LDB3-208ENST00000623007 LCE3CQ5T5A8 94 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms