RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ATOX1O00244 68 aa9.88□□□□□ -0.83
UPF3A-211ENST00000618700 FAM236CP0DP71 79 aa9.88□□□□□ -0.83
UPF3A-211ENST00000618700 LOC101927531A0A1B0GV80 90 aa9.87□□□□□ -0.83
UPF3A-211ENST00000618700 CYP4F30PQ9H0H9 118 aa9.84□□□□□ -0.83
UPF3A-211ENST00000618700 C5orf47Q569G3 176 aa9.8□□□□□ -0.84
UPF3A-211ENST00000618700 MP68P56378 58 aa9.79□□□□□ -0.84
UPF3A-211ENST00000618700 C4orf26Q17RF5 130 aa9.78□□□□□ -0.84
UPF3A-211ENST00000618700 SMIM20Q8N5G0 67 aa9.78□□□□□ -0.84
UPF3A-211ENST00000618700 C1orf64Q8NEQ6 169 aa9.78□□□□□ -0.84
UPF3A-211ENST00000618700 LINC00208Q96KT6 92 aa9.77□□□□□ -0.85
UPF3A-211ENST00000618700 TRAV7A0A075B6U4 112 aa9.75□□□□□ -0.85
UPF3A-211ENST00000618700 H3BPC8 53 aa9.74□□□□□ -0.85
UPF3A-211ENST00000618700 M0R2T5 61 aa9.7□□□□□ -0.86
UPF3A-211ENST00000618700 H1FX-AS1Q4G0G2 97 aa9.7□□□□□ -0.86
UPF3A-211ENST00000618700 KRTAP15-1Q3LI76 137 aa9.69□□□□□ -0.86
UPF3A-211ENST00000618700 KLKP1Q107X0 134 aa9.66□□□□□ -0.86
UPF3A-211ENST00000618700 KRTAP10-6P60371 365 aaPredicted RBP9.64□□□□□ -0.87
UPF3A-211ENST00000618700 SERP2Q8N6R1 65 aa9.61□□□□□ -0.87
UPF3A-211ENST00000618700 FSIP2Q5CZC0 6907 aa9.52□□□□□ -0.88
UPF3A-211ENST00000618700 A8MUN3 132 aa9.49□□□□□ -0.89
UPF3A-211ENST00000618700 C20orf197Q8N268 126 aa9.49□□□□□ -0.89
UPF3A-211ENST00000618700 SNURFQ9Y675 71 aa9.49□□□□□ -0.89
UPF3A-211ENST00000618700 S4R3F8 94 aa9.49□□□□□ -0.89
UPF3A-211ENST00000618700 COX7CP15954 63 aa9.46□□□□□ -0.9
UPF3A-211ENST00000618700 KRTAP9-8Q9BYQ0 159 aa9.46□□□□□ -0.9
UPF3A-211ENST00000618700 LCA10Q71F78 164 aa9.45□□□□□ -0.9
UPF3A-211ENST00000618700 DMAC1Q96GE9 116 aa9.42□□□□□ -0.9
UPF3A-211ENST00000618700 MT2AP02795 61 aa9.38□□□□□ -0.91
UPF3A-211ENST00000618700 ANAPC13Q9BS18 74 aa9.38□□□□□ -0.91
UPF3A-211ENST00000618700 CRCT1Q9UGL9 99 aa9.36□□□□□ -0.91
UPF3A-211ENST00000618700 CSAG1Q6PB30 78 aa9.33□□□□□ -0.92
UPF3A-211ENST00000618700 MT1FP04733 61 aa9.32□□□□□ -0.92
UPF3A-211ENST00000618700 SPANXA2-OT1Q8N9U9 137 aa9.32□□□□□ -0.92
UPF3A-211ENST00000618700 NDUFC1O43677 76 aa9.26□□□□□ -0.93
UPF3A-211ENST00000618700 CYSTM1Q9H1C7 97 aa9.26□□□□□ -0.93
UPF3A-211ENST00000618700 ACYP2P14621 99 aa9.24□□□□□ -0.93
UPF3A-211ENST00000618700 H7BZZ5 65 aa9.23□□□□□ -0.93
UPF3A-211ENST00000618700 KRTAP10-10P60014 251 aa9.23□□□□□ -0.93
UPF3A-211ENST00000618700 CCDC179H3BU77 68 aa9.19□□□□□ -0.94
UPF3A-211ENST00000618700 H0YAA0 97 aa9.11□□□□□ -0.95
UPF3A-211ENST00000618700 CHKB-CPT1BH3BT56 60 aa9.06□□□□□ -0.96
UPF3A-211ENST00000618700 USH2AO75445 5202 aa9.03□□□□□ -0.96
UPF3A-211ENST00000618700 SPTSSBQ8NFR3 76 aa9.02□□□□□ -0.97
UPF3A-211ENST00000618700 COA5Q86WW8 74 aa9.01□□□□□ -0.97
UPF3A-211ENST00000618700 KRTAP5-3Q6L8H2 238 aa8.99□□□□□ -0.97
UPF3A-211ENST00000618700 ADM2Q7Z4H4 148 aa8.98□□□□□ -0.97
UPF3A-211ENST00000618700 ATP5EP56381 51 aaPredicted RBP8.92□□□□□ -0.98
UPF3A-211ENST00000618700 CRIPTQ9P021 101 aa8.9□□□□□ -0.98
UPF3A-211ENST00000618700 SPRR2GQ9BYE4 73 aa8.89□□□□□ -0.99
UPF3A-211ENST00000618700 TMEM258P61165 79 aa8.88□□□□□ -0.99
UPF3A-211ENST00000618700 P0C880 135 aa8.87□□□□□ -0.99
UPF3A-211ENST00000618700 SSPOA2VEC9 5147 aa8.81□□□□□ -1
UPF3A-211ENST00000618700 KRTAP19-8Q3LI54 63 aa8.76□□□□□ -1.01
UPF3A-211ENST00000618700 PCP4P48539 62 aa8.71□□□□□ -1.02
UPF3A-211ENST00000618700 R4GN34 69 aa8.7□□□□□ -1.02
UPF3A-211ENST00000618700 MT1BP07438 61 aa8.69□□□□□ -1.02
UPF3A-211ENST00000618700 M0QZ58 72 aa8.67□□□□□ -1.02
UPF3A-211ENST00000618700 Q5VV11 94 aa8.67□□□□□ -1.02
UPF3A-211ENST00000618700 FCGBPQ9Y6R7 5405 aaPredicted RBP8.61□□□□□ -1.03
UPF3A-211ENST00000618700 SEC61GP60059 68 aa8.61□□□□□ -1.03
UPF3A-211ENST00000618700 KRTAP19-6Q3LI70 58 aa8.6□□□□□ -1.03
UPF3A-211ENST00000618700 SERP1Q9Y6X1 66 aa8.6□□□□□ -1.03
UPF3A-211ENST00000618700 KRTAP13-4Q3LI77 160 aa8.52□□□□□ -1.05
UPF3A-211ENST00000618700 A0A1B0GU69 56 aa8.51□□□□□ -1.05
UPF3A-211ENST00000618700 LINC01554Q52M75 96 aa8.49□□□□□ -1.05
UPF3A-211ENST00000618700 SVIPQ8NHG7 77 aa8.48□□□□□ -1.05
UPF3A-211ENST00000618700 LINC01558Q9Y6Z2 57 aa8.48□□□□□ -1.05
UPF3A-211ENST00000618700 A0A1B0GU33 70 aa8.45□□□□□ -1.06
UPF3A-211ENST00000618700 PLAC4Q8WY50 150 aa8.4□□□□□ -1.06
UPF3A-211ENST00000618700 PRR15LQ9BU68 103 aa8.39□□□□□ -1.07
UPF3A-211ENST00000618700 A6NN06 94 aa8.38□□□□□ -1.07
UPF3A-211ENST00000618700 KRTAP10-5P60370 271 aa8.38□□□□□ -1.07
UPF3A-211ENST00000618700 MACF1Q9UPN3 7388 aaKnown RBP8.38□□□□□ -1.07
UPF3A-211ENST00000618700 LCE1AQ5T7P2 110 aa8.37□□□□□ -1.07
UPF3A-211ENST00000618700 SYNE2Q8WXH0 6885 aaKnown RBP8.36□□□□□ -1.07
UPF3A-211ENST00000618700 SPATA8Q6RVD6 105 aa8.35□□□□□ -1.07
UPF3A-211ENST00000618700 RPS28P62857 69 aaKnown RBP8.3□□□□□ -1.08
UPF3A-211ENST00000618700 SMIM26A0A096LP01 95 aa8.27□□□□□ -1.09
UPF3A-211ENST00000618700 MT1XP80297 61 aa8.27□□□□□ -1.09
UPF3A-211ENST00000618700 Q1T7F1 81 aa8.27□□□□□ -1.09
UPF3A-211ENST00000618700 V9GYY9 64 aa8.27□□□□□ -1.09
UPF3A-211ENST00000618700 A0A0D9SG42 100 aa8.25□□□□□ -1.09
UPF3A-211ENST00000618700 PRO2289Q9P1D8 64 aa8.22□□□□□ -1.09
UPF3A-211ENST00000618700 A8MU10 97 aa8.15□□□□□ -1.1
UPF3A-211ENST00000618700 UQCR11O14957 56 aa8.15□□□□□ -1.1
UPF3A-211ENST00000618700 KRTAP12-1P59990 96 aa8.15□□□□□ -1.1
UPF3A-211ENST00000618700 PSPHP1O15172 72 aa8.14□□□□□ -1.11
UPF3A-211ENST00000618700 KRTAP12-2P59991 146 aa8.09□□□□□ -1.11
UPF3A-211ENST00000618700 SPINT4Q6UDR6 99 aa8.09□□□□□ -1.11
UPF3A-211ENST00000618700 KRTAP6-3Q3LI67 103 aa8.08□□□□□ -1.12
UPF3A-211ENST00000618700 CAMK2N1Q7Z7J9 78 aa8.07□□□□□ -1.12
UPF3A-211ENST00000618700 MIR22HGQ0VDD5 57 aa8.01□□□□□ -1.13
UPF3A-211ENST00000618700 NEBP20929 6669 aa7.93□□□□□ -1.14
UPF3A-211ENST00000618700 KRTAP10-7P60409 375 aaPredicted RBP7.9□□□□□ -1.14
UPF3A-211ENST00000618700 A6NED7 52 aa7.89□□□□□ -1.15
UPF3A-211ENST00000618700 KMT2DO14686 5537 aa7.88□□□□□ -1.15
UPF3A-211ENST00000618700 A0A0A0MQY5 61 aa7.88□□□□□ -1.15
UPF3A-211ENST00000618700 KRTAP10-12P60413 245 aa7.86□□□□□ -1.15
UPF3A-211ENST00000618700 KRTAP5-9P26371 169 aa7.78□□□□□ -1.16
UPF3A-211ENST00000618700 KRTAP2-2Q9BYT5 123 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 149.4 ms