RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 KRTAP9-2Q9BYQ4 174 aa8.1□□□□□ -1.11
CCDC28A-202ENST00000611852 H1FX-AS1Q4G0G2 97 aa8.08□□□□□ -1.12
CCDC28A-202ENST00000611852 SPANXA2-OT1Q8N9U9 137 aa8.06□□□□□ -1.12
CCDC28A-202ENST00000611852 KRTAP9-8Q9BYQ0 159 aa8.04□□□□□ -1.12
CCDC28A-202ENST00000611852 KRTAP3-1Q9BYR8 98 aa8.01□□□□□ -1.13
CCDC28A-202ENST00000611852 MT2AP02795 61 aa7.96□□□□□ -1.14
CCDC28A-202ENST00000611852 SERP1Q9Y6X1 66 aa7.93□□□□□ -1.14
CCDC28A-202ENST00000611852 MT1FP04733 61 aa7.9□□□□□ -1.14
CCDC28A-202ENST00000611852 RPS28P62857 69 aaKnown RBP7.89□□□□□ -1.15
CCDC28A-202ENST00000611852 DMAC1Q96GE9 116 aa7.88□□□□□ -1.15
CCDC28A-202ENST00000611852 S4R3F8 94 aa7.88□□□□□ -1.15
CCDC28A-202ENST00000611852 KRTAP10-10P60014 251 aa7.86□□□□□ -1.15
CCDC28A-202ENST00000611852 LCA10Q71F78 164 aa7.84□□□□□ -1.15
CCDC28A-202ENST00000611852 A8MUN3 132 aa7.83□□□□□ -1.16
CCDC28A-202ENST00000611852 ACYP2P14621 99 aa7.83□□□□□ -1.16
CCDC28A-202ENST00000611852 COA5Q86WW8 74 aa7.81□□□□□ -1.16
CCDC28A-202ENST00000611852 KRTAP9-3Q9BYQ3 159 aa7.78□□□□□ -1.16
CCDC28A-202ENST00000611852 FSIP2Q5CZC0 6907 aa7.78□□□□□ -1.16
CCDC28A-202ENST00000611852 CSAG1Q6PB30 78 aa7.78□□□□□ -1.16
CCDC28A-202ENST00000611852 CHKB-CPT1BH3BT56 60 aa7.74□□□□□ -1.17
CCDC28A-202ENST00000611852 SMIM26A0A096LP01 95 aa7.73□□□□□ -1.17
CCDC28A-202ENST00000611852 KRTAP9-6A0A140TA67 174 aa7.72□□□□□ -1.17
CCDC28A-202ENST00000611852 LCE2BO14633 110 aa7.71□□□□□ -1.18
CCDC28A-202ENST00000611852 CRCT1Q9UGL9 99 aa7.71□□□□□ -1.18
CCDC28A-202ENST00000611852 USH2AO75445 5202 aa7.63□□□□□ -1.19
CCDC28A-202ENST00000611852 SPTSSBQ8NFR3 76 aa7.61□□□□□ -1.19
CCDC28A-202ENST00000611852 V9GYY9 64 aa7.59□□□□□ -1.19
CCDC28A-202ENST00000611852 LOC100996750A0A140TA64 210 aa7.58□□□□□ -1.2
CCDC28A-202ENST00000611852 KRTAP4-6Q9BYQ5 205 aa7.58□□□□□ -1.2
CCDC28A-202ENST00000611852 Q1T7F1 81 aa7.56□□□□□ -1.2
CCDC28A-202ENST00000611852 H0YAA0 97 aa7.53□□□□□ -1.2
CCDC28A-202ENST00000611852 KRTAP19-1Q8IUB9 90 aa7.52□□□□□ -1.21
CCDC28A-202ENST00000611852 SSPOA2VEC9 5147 aa7.51□□□□□ -1.21
CCDC28A-202ENST00000611852 LINC01558Q9Y6Z2 57 aa7.49□□□□□ -1.21
CCDC28A-202ENST00000611852 SPRR2GQ9BYE4 73 aa7.47□□□□□ -1.21
CCDC28A-202ENST00000611852 ADM2Q7Z4H4 148 aa7.45□□□□□ -1.22
CCDC28A-202ENST00000611852 PRR15LQ9BU68 103 aa7.45□□□□□ -1.22
CCDC28A-202ENST00000611852 CRIPTQ9P021 101 aa7.43□□□□□ -1.22
CCDC28A-202ENST00000611852 PSPHP1O15172 72 aa7.42□□□□□ -1.22
CCDC28A-202ENST00000611852 A0A1B0GU69 56 aa7.41□□□□□ -1.22
CCDC28A-202ENST00000611852 SEC61GP60059 68 aa7.4□□□□□ -1.22
CCDC28A-202ENST00000611852 KRTAP19-8Q3LI54 63 aa7.37□□□□□ -1.23
CCDC28A-202ENST00000611852 KRTAP19-6Q3LI70 58 aa7.36□□□□□ -1.23
CCDC28A-202ENST00000611852 Q5VV11 94 aa7.35□□□□□ -1.23
CCDC28A-202ENST00000611852 MT1BP07438 61 aa7.33□□□□□ -1.24
CCDC28A-202ENST00000611852 P0C880 135 aa7.33□□□□□ -1.24
CCDC28A-202ENST00000611852 FCGBPQ9Y6R7 5405 aaPredicted RBP7.3□□□□□ -1.24
CCDC28A-202ENST00000611852 A6NED7 52 aa7.23□□□□□ -1.25
CCDC28A-202ENST00000611852 R4GN34 69 aa7.23□□□□□ -1.25
CCDC28A-202ENST00000611852 M0QZ58 72 aa7.19□□□□□ -1.26
CCDC28A-202ENST00000611852 UQCR11O14957 56 aa7.18□□□□□ -1.26
CCDC28A-202ENST00000611852 A0A1B0GU33 70 aa7.17□□□□□ -1.26
CCDC28A-202ENST00000611852 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.17□□□□□ -1.26
CCDC28A-202ENST00000611852 BRK1Q8WUW1 75 aa7.15□□□□□ -1.27
CCDC28A-202ENST00000611852 A6NN06 94 aa7.12□□□□□ -1.27
CCDC28A-202ENST00000611852 KRTAP10-5P60370 271 aa7.1□□□□□ -1.27
CCDC28A-202ENST00000611852 MIR22HGQ0VDD5 57 aa7.09□□□□□ -1.27
CCDC28A-202ENST00000611852 CDC42SE1Q9NRR8 79 aa7.09□□□□□ -1.27
CCDC28A-202ENST00000611852 LINC01554Q52M75 96 aa7.07□□□□□ -1.28
CCDC28A-202ENST00000611852 SPATA8Q6RVD6 105 aa7.05□□□□□ -1.28
CCDC28A-202ENST00000611852 PLAC4Q8WY50 150 aa7.05□□□□□ -1.28
CCDC28A-202ENST00000611852 MACF1Q9UPN3 7388 aaKnown RBP7.01□□□□□ -1.29
CCDC28A-202ENST00000611852 KRTAP9-7A8MTY7 169 aa6.98□□□□□ -1.29
CCDC28A-202ENST00000611852 PRO0628Q9UI54 55 aa6.98□□□□□ -1.29
CCDC28A-202ENST00000611852 A8MU10 97 aa6.97□□□□□ -1.29
CCDC28A-202ENST00000611852 KRTAP13-4Q3LI77 160 aa6.97□□□□□ -1.29
CCDC28A-202ENST00000611852 MT1XP80297 61 aa6.95□□□□□ -1.3
CCDC28A-202ENST00000611852 PRO2289Q9P1D8 64 aa6.93□□□□□ -1.3
CCDC28A-202ENST00000611852 SYNE2Q8WXH0 6885 aaKnown RBP6.9□□□□□ -1.3
CCDC28A-202ENST00000611852 A0A0D9SG42 100 aa6.88□□□□□ -1.31
CCDC28A-202ENST00000611852 K7ERS5 55 aa6.84□□□□□ -1.31
CCDC28A-202ENST00000611852 KRTAP6-3Q3LI67 103 aa6.8□□□□□ -1.32
CCDC28A-202ENST00000611852 KRTAP4-8Q9BYQ9 185 aa6.79□□□□□ -1.32
CCDC28A-202ENST00000611852 PMAIP1Q13794 54 aa6.75□□□□□ -1.33
CCDC28A-202ENST00000611852 KRTAP12-1P59990 96 aa6.73□□□□□ -1.33
CCDC28A-202ENST00000611852 SPINT4Q6UDR6 99 aa6.72□□□□□ -1.33
CCDC28A-202ENST00000611852 KRTAP12-2P59991 146 aa6.71□□□□□ -1.33
CCDC28A-202ENST00000611852 CAMK2N1Q7Z7J9 78 aa6.69□□□□□ -1.34
CCDC28A-202ENST00000611852 KRTAP10-7P60409 375 aaPredicted RBP6.64□□□□□ -1.35
CCDC28A-202ENST00000611852 KMT2DO14686 5537 aa6.63□□□□□ -1.35
CCDC28A-202ENST00000611852 KRTAP5-9P26371 169 aa6.62□□□□□ -1.35
CCDC28A-202ENST00000611852 KRTAP10-12P60413 245 aa6.6□□□□□ -1.35
CCDC28A-202ENST00000611852 KRTAP4-8A0A0G2JLE6 195 aa6.55□□□□□ -1.36
CCDC28A-202ENST00000611852 KRTAP8-1Q8IUC2 63 aa6.55□□□□□ -1.36
CCDC28A-202ENST00000611852 MUC12Q9UKN1 5478 aa6.51□□□□□ -1.37
CCDC28A-202ENST00000611852 ROMO1P60602 79 aa6.5□□□□□ -1.37
CCDC28A-202ENST00000611852 KTN1-AS1Q86SY8 53 aa6.48□□□□□ -1.37
CCDC28A-202ENST00000611852 SPRR2FQ96RM1 72 aa6.48□□□□□ -1.37
CCDC28A-202ENST00000611852 LCE3BQ5TA77 95 aa6.45□□□□□ -1.38
CCDC28A-202ENST00000611852 SVIPQ8NHG7 77 aa6.43□□□□□ -1.38
CCDC28A-202ENST00000611852 NEBP20929 6669 aa6.42□□□□□ -1.38
CCDC28A-202ENST00000611852 MDN1Q9NU22 5596 aa6.37□□□□□ -1.39
CCDC28A-202ENST00000611852 C10orf95Q9H7T3 257 aa6.35□□□□□ -1.39
CCDC28A-202ENST00000611852 KRTAP9-9Q9BYP9 154 aa6.33□□□□□ -1.4
CCDC28A-202ENST00000611852 KRTAP9-4Q9BYQ2 154 aa6.33□□□□□ -1.4
CCDC28A-202ENST00000611852 KRTAP4-12Q9BQ66 201 aa6.31□□□□□ -1.4
CCDC28A-202ENST00000611852 SPRR2EP22531 72 aa6.3□□□□□ -1.4
CCDC28A-202ENST00000611852 SPRR2BP35325 72 aa6.3□□□□□ -1.4
CCDC28A-202ENST00000611852 SPRR2AP35326 72 aa6.3□□□□□ -1.4
CCDC28A-202ENST00000611852 PRAC1Q96KF2 57 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms