RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 SNURFQ9Y675 71 aa5.23□□□□□ -1.57
SYNE1-240ENST00000610489 MP68P56378 58 aa5.22□□□□□ -1.57
SYNE1-240ENST00000610489 TMEM258P61165 79 aa5.22□□□□□ -1.57
SYNE1-240ENST00000610489 H0Y9P7 68 aa5.21□□□□□ -1.57
SYNE1-240ENST00000610489 H7BZZ5 65 aa5.21□□□□□ -1.57
SYNE1-240ENST00000610489 FAM236DA0A1B0GTK5 79 aa5.21□□□□□ -1.58
SYNE1-240ENST00000610489 FAM236CP0DP71 79 aa5.21□□□□□ -1.58
SYNE1-240ENST00000610489 KRTAP9-4Q9BYQ2 154 aa5.21□□□□□ -1.58
SYNE1-240ENST00000610489 LOC101927531A0A1B0GV80 90 aa5.19□□□□□ -1.58
SYNE1-240ENST00000610489 MT1HP80294 61 aa5.19□□□□□ -1.58
SYNE1-240ENST00000610489 CYP4F30PQ9H0H9 118 aa5.19□□□□□ -1.58
SYNE1-240ENST00000610489 KRTAP9-2Q9BYQ4 174 aa5.18□□□□□ -1.58
SYNE1-240ENST00000610489 LINC00208Q96KT6 92 aa5.17□□□□□ -1.58
SYNE1-240ENST00000610489 C1orf64Q8NEQ6 169 aa5.16□□□□□ -1.58
SYNE1-240ENST00000610489 PRAC1Q96KF2 57 aa5.16□□□□□ -1.58
SYNE1-240ENST00000610489 KRTAP9-9Q9BYP9 154 aa5.16□□□□□ -1.58
SYNE1-240ENST00000610489 C4orf26Q17RF5 130 aa5.15□□□□□ -1.58
SYNE1-240ENST00000610489 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-240ENST00000610489 ATP5EP56381 51 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-240ENST00000610489 LCE3BQ5TA77 95 aa5.12□□□□□ -1.59
SYNE1-240ENST00000610489 M0R2T5 61 aa5.11□□□□□ -1.59
SYNE1-240ENST00000610489 RPS28P62857 69 aaKnown RBP5.11□□□□□ -1.59
SYNE1-240ENST00000610489 H1FX-AS1Q4G0G2 97 aa5.1□□□□□ -1.59
SYNE1-240ENST00000610489 SPANXA2-OT1Q8N9U9 137 aa5.09□□□□□ -1.59
SYNE1-240ENST00000610489 KRTAP9-3Q9BYQ3 159 aa5.06□□□□□ -1.6
SYNE1-240ENST00000610489 SERP1Q9Y6X1 66 aa5.06□□□□□ -1.6
SYNE1-240ENST00000610489 KRTAP10-6P60371 365 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-240ENST00000610489 SEC61GP60059 68 aa5.01□□□□□ -1.61
SYNE1-240ENST00000610489 A8MUN3 132 aa5□□□□□ -1.61
SYNE1-240ENST00000610489 S4R3F8 94 aa5□□□□□ -1.61
SYNE1-240ENST00000610489 LCA10Q71F78 164 aa4.96□□□□□ -1.61
SYNE1-240ENST00000610489 DMAC1Q96GE9 116 aa4.96□□□□□ -1.62
SYNE1-240ENST00000610489 KRTAP9-8Q9BYQ0 159 aa4.95□□□□□ -1.62
SYNE1-240ENST00000610489 SMIM26A0A096LP01 95 aa4.94□□□□□ -1.62
SYNE1-240ENST00000610489 CSAG1Q6PB30 78 aa4.92□□□□□ -1.62
SYNE1-240ENST00000610489 MT2AP02795 61 aa4.91□□□□□ -1.62
SYNE1-240ENST00000610489 ACYP2P14621 99 aa4.91□□□□□ -1.62
SYNE1-240ENST00000610489 COA5Q86WW8 74 aa4.91□□□□□ -1.62
SYNE1-240ENST00000610489 LCE5AQ5TCM9 118 aa4.89□□□□□ -1.63
SYNE1-240ENST00000610489 MT1FP04733 61 aa4.88□□□□□ -1.63
SYNE1-240ENST00000610489 KRTAP10-10P60014 251 aa4.86□□□□□ -1.63
SYNE1-240ENST00000610489 Q1T7F1 81 aa4.84□□□□□ -1.63
SYNE1-240ENST00000610489 V9GYY9 64 aa4.82□□□□□ -1.64
SYNE1-240ENST00000610489 CHKB-CPT1BH3BT56 60 aa4.8□□□□□ -1.64
SYNE1-240ENST00000610489 H0YAA0 97 aa4.78□□□□□ -1.64
SYNE1-240ENST00000610489 LCE1DQ5T752 114 aa4.77□□□□□ -1.65
SYNE1-240ENST00000610489 LINC01558Q9Y6Z2 57 aa4.77□□□□□ -1.65
SYNE1-240ENST00000610489 SPTSSBQ8NFR3 76 aa4.76□□□□□ -1.65
SYNE1-240ENST00000610489 KRTAP4-8A0A0G2JLE6 195 aa4.73□□□□□ -1.65
SYNE1-240ENST00000610489 ADM2Q7Z4H4 148 aa4.73□□□□□ -1.65
SYNE1-240ENST00000610489 PSPHP1O15172 72 aa4.69□□□□□ -1.66
SYNE1-240ENST00000610489 PRR15LQ9BU68 103 aa4.69□□□□□ -1.66
SYNE1-240ENST00000610489 Q5VV11 94 aa4.68□□□□□ -1.66
SYNE1-240ENST00000610489 CRIPTQ9P021 101 aa4.68□□□□□ -1.66
SYNE1-240ENST00000610489 USH2AO75445 5202 aa4.68□□□□□ -1.66
SYNE1-240ENST00000610489 P0C880 135 aa4.66□□□□□ -1.66
SYNE1-240ENST00000610489 SPRR2GQ9BYE4 73 aa4.66□□□□□ -1.66
SYNE1-240ENST00000610489 FSIP2Q5CZC0 6907 aa4.65□□□□□ -1.66
SYNE1-240ENST00000610489 A0A1B0GU69 56 aa4.63□□□□□ -1.67
SYNE1-240ENST00000610489 NDUFAF8A1L188 74 aa4.63□□□□□ -1.67
SYNE1-240ENST00000610489 CRCT1Q9UGL9 99 aa4.6□□□□□ -1.67
SYNE1-240ENST00000610489 KRTAP19-8Q3LI54 63 aa4.59□□□□□ -1.67
SYNE1-240ENST00000610489 R4GN34 69 aa4.59□□□□□ -1.67
SYNE1-240ENST00000610489 SSPOA2VEC9 5147 aa4.58□□□□□ -1.68
SYNE1-240ENST00000610489 M0QZ58 72 aa4.57□□□□□ -1.68
SYNE1-240ENST00000610489 A6NED7 52 aa4.56□□□□□ -1.68
SYNE1-240ENST00000610489 MT1BP07438 61 aa4.55□□□□□ -1.68
SYNE1-240ENST00000610489 BRK1Q8WUW1 75 aa4.55□□□□□ -1.68
SYNE1-240ENST00000610489 KRTAP4-9Q9BYQ8 210 aa4.55□□□□□ -1.68
SYNE1-240ENST00000610489 KRTAP4-7Q9BYR0 210 aa4.53□□□□□ -1.68
SYNE1-240ENST00000610489 PRO0628Q9UI54 55 aa4.53□□□□□ -1.69
SYNE1-240ENST00000610489 UQCR11O14957 56 aa4.52□□□□□ -1.69
SYNE1-240ENST00000610489 CDC42SE1Q9NRR8 79 aa4.52□□□□□ -1.69
SYNE1-240ENST00000610489 SPATA8Q6RVD6 105 aa4.5□□□□□ -1.69
SYNE1-240ENST00000610489 KRTAP19-6Q3LI70 58 aa4.5□□□□□ -1.69
SYNE1-240ENST00000610489 A0A1B0GU33 70 aa4.49□□□□□ -1.69
SYNE1-240ENST00000610489 LINC01554Q52M75 96 aa4.48□□□□□ -1.69
SYNE1-240ENST00000610489 KRTAP4-11Q9BYQ6 195 aa4.48□□□□□ -1.69
SYNE1-240ENST00000610489 MIR22HGQ0VDD5 57 aa4.47□□□□□ -1.69
SYNE1-240ENST00000610489 KRTAP13-4Q3LI77 160 aa4.47□□□□□ -1.69
SYNE1-240ENST00000610489 LCE1AQ5T7P2 110 aa4.47□□□□□ -1.69
SYNE1-240ENST00000610489 A8MU10 97 aa4.45□□□□□ -1.7
SYNE1-240ENST00000610489 FCGBPQ9Y6R7 5405 aaPredicted RBP4.43□□□□□ -1.7
SYNE1-240ENST00000610489 PLAC4Q8WY50 150 aa4.43□□□□□ -1.7
SYNE1-240ENST00000610489 A6NN06 94 aa4.4□□□□□ -1.71
SYNE1-240ENST00000610489 KRTAP10-5P60370 271 aa4.39□□□□□ -1.71
SYNE1-240ENST00000610489 A0A0D9SG42 100 aa4.35□□□□□ -1.71
SYNE1-240ENST00000610489 MT1XP80297 61 aa4.34□□□□□ -1.71
SYNE1-240ENST00000610489 KRTAP4-2Q9BYR5 136 aa4.32□□□□□ -1.72
SYNE1-240ENST00000610489 PRO2289Q9P1D8 64 aa4.32□□□□□ -1.72
SYNE1-240ENST00000610489 PMAIP1Q13794 54 aa4.32□□□□□ -1.72
SYNE1-240ENST00000610489 KRTAP12-1P59990 96 aa4.28□□□□□ -1.72
SYNE1-240ENST00000610489 MT3P25713 68 aa4.27□□□□□ -1.73
SYNE1-240ENST00000610489 SPINT4Q6UDR6 99 aa4.27□□□□□ -1.73
SYNE1-240ENST00000610489 K7ERS5 55 aa4.26□□□□□ -1.73
SYNE1-240ENST00000610489 CAMK2N1Q7Z7J9 78 aa4.26□□□□□ -1.73
SYNE1-240ENST00000610489 KRTAP12-2P59991 146 aa4.25□□□□□ -1.73
SYNE1-240ENST00000610489 MACF1Q9UPN3 7388 aaKnown RBP4.23□□□□□ -1.73
SYNE1-240ENST00000610489 KTN1-AS1Q86SY8 53 aa4.17□□□□□ -1.74
SYNE1-240ENST00000610489 KRTAP10-7P60409 375 aaPredicted RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms