RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 FAM236DA0A1B0GTK5 79 aa5.83□□□□□ -1.48
LINC00539-204ENST00000608957 FAM236CP0DP71 79 aa5.83□□□□□ -1.48
LINC00539-204ENST00000608957 ATP5EP56381 51 aaPredicted RBP5.83□□□□□ -1.48
LINC00539-204ENST00000608957 MPLKIPQ8TAP9 179 aa5.79□□□□□ -1.48
LINC00539-204ENST00000608957 C4orf26Q17RF5 130 aa5.78□□□□□ -1.48
LINC00539-204ENST00000608957 KRTAP9-8Q9BYQ0 159 aa5.77□□□□□ -1.49
LINC00539-204ENST00000608957 DMAC1Q96GE9 116 aa5.76□□□□□ -1.49
LINC00539-204ENST00000608957 A8MUN3 132 aa5.73□□□□□ -1.49
LINC00539-204ENST00000608957 RBM12B-AS1Q9P1G2 102 aa5.71□□□□□ -1.5
LINC00539-204ENST00000608957 ACYP2P14621 99 aa5.69□□□□□ -1.5
LINC00539-204ENST00000608957 KRTAP3-1Q9BYR8 98 aa5.69□□□□□ -1.5
LINC00539-204ENST00000608957 MT2AP02795 61 aa5.68□□□□□ -1.5
LINC00539-204ENST00000608957 SERP1Q9Y6X1 66 aa5.68□□□□□ -1.5
LINC00539-204ENST00000608957 COA5Q86WW8 74 aa5.67□□□□□ -1.5
LINC00539-204ENST00000608957 MT1FP04733 61 aa5.65□□□□□ -1.5
LINC00539-204ENST00000608957 H1FX-AS1Q4G0G2 97 aa5.63□□□□□ -1.51
LINC00539-204ENST00000608957 CHKB-CPT1BH3BT56 60 aa5.62□□□□□ -1.51
LINC00539-204ENST00000608957 RPS28P62857 69 aaKnown RBP5.6□□□□□ -1.51
LINC00539-204ENST00000608957 KRTAP9-3Q9BYQ3 159 aa5.59□□□□□ -1.51
LINC00539-204ENST00000608957 S4R3F8 94 aa5.58□□□□□ -1.52
LINC00539-204ENST00000608957 USH2AO75445 5202 aa5.56□□□□□ -1.52
LINC00539-204ENST00000608957 KRTAP10-10P60014 251 aa5.55□□□□□ -1.52
LINC00539-204ENST00000608957 LCA10Q71F78 164 aa5.54□□□□□ -1.52
LINC00539-204ENST00000608957 SPTSSBQ8NFR3 76 aa5.53□□□□□ -1.52
LINC00539-204ENST00000608957 SSPOA2VEC9 5147 aa5.51□□□□□ -1.53
LINC00539-204ENST00000608957 SMIM26A0A096LP01 95 aa5.51□□□□□ -1.53
LINC00539-204ENST00000608957 KRTAP19-1Q8IUB9 90 aa5.47□□□□□ -1.53
LINC00539-204ENST00000608957 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.46□□□□□ -1.54
LINC00539-204ENST00000608957 CSAG1Q6PB30 78 aa5.44□□□□□ -1.54
LINC00539-204ENST00000608957 Q1T7F1 81 aa5.42□□□□□ -1.54
LINC00539-204ENST00000608957 V9GYY9 64 aa5.42□□□□□ -1.54
LINC00539-204ENST00000608957 LINC01558Q9Y6Z2 57 aa5.41□□□□□ -1.54
LINC00539-204ENST00000608957 FCGBPQ9Y6R7 5405 aaPredicted RBP5.4□□□□□ -1.54
LINC00539-204ENST00000608957 KRTAP9-7A8MTY7 169 aa5.4□□□□□ -1.54
LINC00539-204ENST00000608957 A0A1B0GU69 56 aa5.36□□□□□ -1.55
LINC00539-204ENST00000608957 PRR15LQ9BU68 103 aa5.36□□□□□ -1.55
LINC00539-204ENST00000608957 SEC61GP60059 68 aa5.35□□□□□ -1.55
LINC00539-204ENST00000608957 KRTAP19-6Q3LI70 58 aa5.35□□□□□ -1.55
LINC00539-204ENST00000608957 H0YAA0 97 aa5.34□□□□□ -1.55
LINC00539-204ENST00000608957 PSPHP1O15172 72 aa5.32□□□□□ -1.56
LINC00539-204ENST00000608957 ADM2Q7Z4H4 148 aa5.31□□□□□ -1.56
LINC00539-204ENST00000608957 Q5VV11 94 aa5.28□□□□□ -1.56
LINC00539-204ENST00000608957 P0C880 135 aa5.25□□□□□ -1.57
LINC00539-204ENST00000608957 H3BS24 57 aa5.24□□□□□ -1.57
LINC00539-204ENST00000608957 A0A1B0GU33 70 aa5.21□□□□□ -1.58
LINC00539-204ENST00000608957 MT1BP07438 61 aa5.19□□□□□ -1.58
LINC00539-204ENST00000608957 A6NED7 52 aa5.17□□□□□ -1.58
LINC00539-204ENST00000608957 UQCR11O14957 56 aa5.17□□□□□ -1.58
LINC00539-204ENST00000608957 KRTAP19-8Q3LI54 63 aa5.16□□□□□ -1.58
LINC00539-204ENST00000608957 SPRR2GQ9BYE4 73 aa5.16□□□□□ -1.58
LINC00539-204ENST00000608957 MACF1Q9UPN3 7388 aaKnown RBP5.14□□□□□ -1.59
LINC00539-204ENST00000608957 SYNE2Q8WXH0 6885 aaKnown RBP5.14□□□□□ -1.59
LINC00539-204ENST00000608957 M0QZ58 72 aa5.13□□□□□ -1.59
LINC00539-204ENST00000608957 CRIPTQ9P021 101 aa5.13□□□□□ -1.59
LINC00539-204ENST00000608957 MIR22HGQ0VDD5 57 aa5.12□□□□□ -1.59
LINC00539-204ENST00000608957 KRTAP13-4Q3LI77 160 aa5.12□□□□□ -1.59
LINC00539-204ENST00000608957 SPATA8Q6RVD6 105 aa5.12□□□□□ -1.59
LINC00539-204ENST00000608957 R4GN34 69 aa5.12□□□□□ -1.59
LINC00539-204ENST00000608957 LOC100996750A0A140TA64 210 aa5.08□□□□□ -1.6
LINC00539-204ENST00000608957 KRTAP6-3Q3LI67 103 aa5.08□□□□□ -1.6
LINC00539-204ENST00000608957 KRTAP4-6Q9BYQ5 205 aa5.08□□□□□ -1.6
LINC00539-204ENST00000608957 CDC42SE1Q9NRR8 79 aa5.07□□□□□ -1.6
LINC00539-204ENST00000608957 A6NN06 94 aa5.06□□□□□ -1.6
LINC00539-204ENST00000608957 KRTAP10-5P60370 271 aa5.05□□□□□ -1.6
LINC00539-204ENST00000608957 BRK1Q8WUW1 75 aa5.05□□□□□ -1.6
LINC00539-204ENST00000608957 A8MU10 97 aa5.04□□□□□ -1.6
LINC00539-204ENST00000608957 A0A0D9SG42 100 aa5.02□□□□□ -1.61
LINC00539-204ENST00000608957 LINC01554Q52M75 96 aa5.02□□□□□ -1.61
LINC00539-204ENST00000608957 KRTAP12-1P59990 96 aa4.94□□□□□ -1.62
LINC00539-204ENST00000608957 K7ERS5 55 aa4.91□□□□□ -1.62
LINC00539-204ENST00000608957 KRTAP12-2P59991 146 aa4.91□□□□□ -1.62
LINC00539-204ENST00000608957 SPINT4Q6UDR6 99 aa4.91□□□□□ -1.62
LINC00539-204ENST00000608957 PRO0628Q9UI54 55 aa4.89□□□□□ -1.63
LINC00539-204ENST00000608957 KRTAP5-9P26371 169 aa4.86□□□□□ -1.63
LINC00539-204ENST00000608957 MT1XP80297 61 aa4.85□□□□□ -1.63
LINC00539-204ENST00000608957 PLAC4Q8WY50 150 aa4.85□□□□□ -1.63
LINC00539-204ENST00000608957 MUC12Q9UKN1 5478 aa4.82□□□□□ -1.64
LINC00539-204ENST00000608957 NEBP20929 6669 aa4.8□□□□□ -1.64
LINC00539-204ENST00000608957 CAMK2N1Q7Z7J9 78 aa4.8□□□□□ -1.64
LINC00539-204ENST00000608957 SVIPQ8NHG7 77 aa4.78□□□□□ -1.64
LINC00539-204ENST00000608957 PMAIP1Q13794 54 aa4.76□□□□□ -1.65
LINC00539-204ENST00000608957 KMT2DO14686 5537 aa4.75□□□□□ -1.65
LINC00539-204ENST00000608957 PRO2289Q9P1D8 64 aa4.75□□□□□ -1.65
LINC00539-204ENST00000608957 KRTAP20-1Q3LI63 56 aa4.73□□□□□ -1.65
LINC00539-204ENST00000608957 KRTAP4-8Q9BYQ9 185 aa4.72□□□□□ -1.65
LINC00539-204ENST00000608957 ROMO1P60602 79 aa4.68□□□□□ -1.66
LINC00539-204ENST00000608957 SPRR2FQ96RM1 72 aa4.68□□□□□ -1.66
LINC00539-204ENST00000608957 MDN1Q9NU22 5596 aa4.66□□□□□ -1.66
LINC00539-204ENST00000608957 KRTAP4-8A0A0G2JLE6 195 aa4.66□□□□□ -1.66
LINC00539-204ENST00000608957 C10orf95Q9H7T3 257 aa4.66□□□□□ -1.66
LINC00539-204ENST00000608957 KRTAP8-1Q8IUC2 63 aa4.65□□□□□ -1.67
LINC00539-204ENST00000608957 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
LINC00539-204ENST00000608957 SPRR2EP22531 72 aa4.63□□□□□ -1.67
LINC00539-204ENST00000608957 SPRR2BP35325 72 aa4.63□□□□□ -1.67
LINC00539-204ENST00000608957 SPRR2AP35326 72 aa4.63□□□□□ -1.67
LINC00539-204ENST00000608957 KRTAP10-12P60413 245 aa4.59□□□□□ -1.67
LINC00539-204ENST00000608957 LCE1AQ5T7P2 110 aa4.59□□□□□ -1.67
LINC00539-204ENST00000608957 KRTAP4-12Q9BQ66 201 aa4.59□□□□□ -1.67
LINC00539-204ENST00000608957 KRTAP2-3P0C7H8 128 aa4.57□□□□□ -1.68
LINC00539-204ENST00000608957 KRTAP2-4Q9BYR9 128 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms