RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 MT1HP80294 61 aa2.83□□□□□ -1.96
VRK3-226ENST00000602029 C4orf26Q17RF5 130 aa2.83□□□□□ -1.96
VRK3-226ENST00000602029 WFDC13Q8IUB5 93 aa2.83□□□□□ -1.96
VRK3-226ENST00000602029 LINC00208Q96KT6 92 aa2.83□□□□□ -1.96
VRK3-226ENST00000602029 C1orf64Q8NEQ6 169 aa2.82□□□□□ -1.96
VRK3-226ENST00000602029 C8orf17Q9NRJ1 99 aa2.82□□□□□ -1.96
VRK3-226ENST00000602029 MRPL34Q9BQ48 92 aaKnown RBP2.81□□□□□ -1.96
VRK3-226ENST00000602029 LOC101927531A0A1B0GV80 90 aa2.8□□□□□ -1.96
VRK3-226ENST00000602029 KRTAP10-6P60371 365 aaPredicted RBP2.8□□□□□ -1.96
VRK3-226ENST00000602029 NEBP20929 6669 aa2.79□□□□□ -1.96
VRK3-226ENST00000602029 DEFB116Q30KQ4 102 aa2.79□□□□□ -1.96
VRK3-226ENST00000602029 KRTAP19-2Q3LHN2 52 aa2.79□□□□□ -1.96
VRK3-226ENST00000602029 A0A0G2JQZ4 141 aa2.78□□□□□ -1.96
VRK3-226ENST00000602029 RPL37P61927 97 aaKnown RBP2.77□□□□□ -1.97
VRK3-226ENST00000602029 LCE1DQ5T752 114 aa2.77□□□□□ -1.97
VRK3-226ENST00000602029 ATP11AUNQ6ZP68 121 aa2.77□□□□□ -1.97
VRK3-226ENST00000602029 IGHV6-1A0A0B4J1U7 121 aa2.76□□□□□ -1.97
VRK3-226ENST00000602029 NDUFS5O43920 106 aa2.75□□□□□ -1.97
VRK3-226ENST00000602029 Q8N9P0 234 aaPredicted RBP2.75□□□□□ -1.97
VRK3-226ENST00000602029 MPLKIPQ8TAP9 179 aa2.75□□□□□ -1.97
VRK3-226ENST00000602029 BRK1Q8WUW1 75 aa2.75□□□□□ -1.97
VRK3-226ENST00000602029 KRTAP4-7Q9BYR0 210 aa2.75□□□□□ -1.97
VRK3-226ENST00000602029 Q75L30 129 aa2.74□□□□□ -1.97
VRK3-226ENST00000602029 COA5Q86WW8 74 aa2.74□□□□□ -1.97
VRK3-226ENST00000602029 ACYP2P14621 99 aa2.73□□□□□ -1.97
VRK3-226ENST00000602029 LINC00313P59037 77 aa2.73□□□□□ -1.97
VRK3-226ENST00000602029 LINC01558Q9Y6Z2 57 aa2.73□□□□□ -1.97
VRK3-226ENST00000602029 MUC12Q9UKN1 5478 aa2.73□□□□□ -1.97
VRK3-226ENST00000602029 Q5VV11 94 aa2.71□□□□□ -1.98
VRK3-226ENST00000602029 DMAC1Q96GE9 116 aa2.71□□□□□ -1.98
VRK3-226ENST00000602029 A8MUN3 132 aa2.7□□□□□ -1.98
VRK3-226ENST00000602029 PRR15LQ9BU68 103 aa2.7□□□□□ -1.98
VRK3-226ENST00000602029 KRTAP16-1A8MUX0 517 aa2.69□□□□□ -1.98
VRK3-226ENST00000602029 IGKV2-30P06310 120 aa2.69□□□□□ -1.98
VRK3-226ENST00000602029 HRES1P13985 223 aa2.69□□□□□ -1.98
VRK3-226ENST00000602029 Q5W150 140 aa2.69□□□□□ -1.98
VRK3-226ENST00000602029 CDC42SE1Q9NRR8 79 aa2.69□□□□□ -1.98
VRK3-226ENST00000602029 PSPHP1O15172 72 aa2.68□□□□□ -1.98
VRK3-226ENST00000602029 KRTAP19-4Q3LI73 84 aa2.68□□□□□ -1.98
VRK3-226ENST00000602029 LCE4AQ5TA78 99 aa2.68□□□□□ -1.98
VRK3-226ENST00000602029 KRTAP4-9Q9BYQ8 210 aa2.68□□□□□ -1.98
VRK3-226ENST00000602029 CHKB-CPT1BH3BT56 60 aa2.67□□□□□ -1.98
VRK3-226ENST00000602029 KRTAP20-1Q3LI63 56 aa2.67□□□□□ -1.98
VRK3-226ENST00000602029 KRTAP6-3Q3LI67 103 aa2.67□□□□□ -1.98
VRK3-226ENST00000602029 NOTCH2NLQ7Z3S9 236 aa2.67□□□□□ -1.98
VRK3-226ENST00000602029 A6NED7 52 aa2.66□□□□□ -1.98
VRK3-226ENST00000602029 KRTAP10-10P60014 251 aa2.66□□□□□ -1.98
VRK3-226ENST00000602029 RBM12B-AS1Q9P1G2 102 aa2.66□□□□□ -1.98
VRK3-226ENST00000602029 KRTAP23-1A1A580 65 aa2.65□□□□□ -1.99
VRK3-226ENST00000602029 C7orf65Q6ZTY9 151 aa2.65□□□□□ -1.99
VRK3-226ENST00000602029 SPTSSBQ8NFR3 76 aa2.65□□□□□ -1.99
VRK3-226ENST00000602029 C20orf166-AS1Q96NR2 134 aa2.65□□□□□ -1.99
VRK3-226ENST00000602029 IGKV2D-30A0A075B6S6 120 aa2.64□□□□□ -1.99
VRK3-226ENST00000602029 PMAIP1Q13794 54 aa2.64□□□□□ -1.99
VRK3-226ENST00000602029 A8MUU9 505 aa2.62□□□□□ -1.99
VRK3-226ENST00000602029 KRTAP9-8Q9BYQ0 159 aa2.62□□□□□ -1.99
VRK3-226ENST00000602029 A0A1B0GU69 56 aa2.61□□□□□ -1.99
VRK3-226ENST00000602029 MT2AP02795 61 aa2.61□□□□□ -1.99
VRK3-226ENST00000602029 KTN1-AS1Q86SY8 53 aa2.61□□□□□ -1.99
VRK3-226ENST00000602029 KRTAP4-2Q9BYR5 136 aa2.61□□□□□ -1.99
VRK3-226ENST00000602029 UQCR11O14957 56 aa2.6□□□□□ -1.99
VRK3-226ENST00000602029 LCA10Q71F78 164 aa2.6□□□□□ -1.99
VRK3-226ENST00000602029 A6NN06 94 aa2.59□□□□□ -1.99
VRK3-226ENST00000602029 MT1FP04733 61 aa2.59□□□□□ -1.99
VRK3-226ENST00000602029 SEC61GP60059 68 aa2.59□□□□□ -1.99
VRK3-226ENST00000602029 SPATA8Q6RVD6 105 aa2.58□□□□□ -2
VRK3-226ENST00000602029 KRTAP4-11Q9BYQ6 195 aa2.58□□□□□ -2
VRK3-226ENST00000602029 KMT2DO14686 5537 aa2.58□□□□□ -2
VRK3-226ENST00000602029 SPINK7P58062 85 aa2.56□□□□□ -2
VRK3-226ENST00000602029 MIR22HGQ0VDD5 57 aa2.55□□□□□ -2
VRK3-226ENST00000602029 KRTAP19-6Q3LI70 58 aa2.55□□□□□ -2
VRK3-226ENST00000602029 LCE5AQ5TCM9 118 aa2.55□□□□□ -2
VRK3-226ENST00000602029 KRTAP9-3Q9BYQ3 159 aa2.55□□□□□ -2
VRK3-226ENST00000602029 MDN1Q9NU22 5596 aa2.55□□□□□ -2
VRK3-226ENST00000602029 GPR98Q8WXG9 6306 aa2.54□□□□□ -2
VRK3-226ENST00000602029 KRTAP3-1Q9BYR8 98 aa2.54□□□□□ -2
VRK3-226ENST00000602029 A8MU10 97 aa2.51□□□□□ -2.01
VRK3-226ENST00000602029 A0A1B0GU33 70 aa2.47□□□□□ -2.01
VRK3-226ENST00000602029 K7ERS5 55 aa2.47□□□□□ -2.01
VRK3-226ENST00000602029 KRTAP2-3P0C7H8 128 aa2.47□□□□□ -2.01
VRK3-226ENST00000602029 KRTAP2-4Q9BYR9 128 aa2.47□□□□□ -2.01
VRK3-226ENST00000602029 H1FX-AS1Q4G0G2 97 aa2.46□□□□□ -2.02
VRK3-226ENST00000602029 H0YAA0 97 aa2.44□□□□□ -2.02
VRK3-226ENST00000602029 S4R3F8 94 aa2.42□□□□□ -2.02
VRK3-226ENST00000602029 KRTAP5-9P26371 169 aa2.4□□□□□ -2.03
VRK3-226ENST00000602029 LINC01554Q52M75 96 aa2.39□□□□□ -2.03
VRK3-226ENST00000602029 A0A0A0MQY5 61 aa2.37□□□□□ -2.03
VRK3-226ENST00000602029 M0QZ58 72 aa2.37□□□□□ -2.03
VRK3-226ENST00000602029 KRTAP2-2Q9BYT5 123 aa2.37□□□□□ -2.03
VRK3-226ENST00000602029 KRTAP2-1Q9BYU5 128 aa2.37□□□□□ -2.03
VRK3-226ENST00000602029 CSAG1Q6PB30 78 aa2.36□□□□□ -2.03
VRK3-226ENST00000602029 KRTAP25-1Q3LHN0 102 aa2.35□□□□□ -2.03
VRK3-226ENST00000602029 ROMO1P60602 79 aa2.34□□□□□ -2.03
VRK3-226ENST00000602029 ADM2Q7Z4H4 148 aa2.33□□□□□ -2.04
VRK3-226ENST00000602029 PRAC1Q96KF2 57 aa2.33□□□□□ -2.04
VRK3-226ENST00000602029 MT1BP07438 61 aa2.32□□□□□ -2.04
VRK3-226ENST00000602029 KRTAP5-3Q6L8H2 238 aa2.32□□□□□ -2.04
VRK3-226ENST00000602029 KRTAP10-5P60370 271 aa2.31□□□□□ -2.04
VRK3-226ENST00000602029 SPRR2EP22531 72 aa2.29□□□□□ -2.04
VRK3-226ENST00000602029 SPRR2BP35325 72 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms