RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 FSIP2Q5CZC0 6907 aa7.28□□□□□ -1.24
LIG1-219ENST00000600055 KRTAP9-3Q9BYQ3 159 aa7.23□□□□□ -1.25
LIG1-219ENST00000600055 SVIPQ8NHG7 77 aa7.19□□□□□ -1.26
LIG1-219ENST00000600055 ANAPC13Q9BS18 74 aa7.19□□□□□ -1.26
LIG1-219ENST00000600055 COX7CP15954 63 aa7.18□□□□□ -1.26
LIG1-219ENST00000600055 S4R3F8 94 aa7.18□□□□□ -1.26
LIG1-219ENST00000600055 C20orf197Q8N268 126 aa7.16□□□□□ -1.26
LIG1-219ENST00000600055 USH2AO75445 5202 aa7.14□□□□□ -1.27
LIG1-219ENST00000600055 A8MUN3 132 aa7.14□□□□□ -1.27
LIG1-219ENST00000600055 KLKP1Q107X0 134 aa7.14□□□□□ -1.27
LIG1-219ENST00000600055 LCA10Q71F78 164 aa7.14□□□□□ -1.27
LIG1-219ENST00000600055 SNURFQ9Y675 71 aa7.12□□□□□ -1.27
LIG1-219ENST00000600055 NDUFC1O43677 76 aa7.09□□□□□ -1.27
LIG1-219ENST00000600055 CSAG1Q6PB30 78 aa7.08□□□□□ -1.28
LIG1-219ENST00000600055 SPANXA2-OT1Q8N9U9 137 aa7.03□□□□□ -1.28
LIG1-219ENST00000600055 SSPOA2VEC9 5147 aa7.03□□□□□ -1.28
LIG1-219ENST00000600055 ACYP2P14621 99 aa7.01□□□□□ -1.29
LIG1-219ENST00000600055 DMAC1Q96GE9 116 aa7.01□□□□□ -1.29
LIG1-219ENST00000600055 KRTAP19-1Q8IUB9 90 aa6.96□□□□□ -1.3
LIG1-219ENST00000600055 CCDC179H3BU77 68 aa6.94□□□□□ -1.3
LIG1-219ENST00000600055 H7BZZ5 65 aa6.93□□□□□ -1.3
LIG1-219ENST00000600055 SPTSSBQ8NFR3 76 aa6.9□□□□□ -1.3
LIG1-219ENST00000600055 CHKB-CPT1BH3BT56 60 aa6.89□□□□□ -1.31
LIG1-219ENST00000600055 FCGBPQ9Y6R7 5405 aaPredicted RBP6.86□□□□□ -1.31
LIG1-219ENST00000600055 ATP5EP56381 51 aaPredicted RBP6.86□□□□□ -1.31
LIG1-219ENST00000600055 KRTAP19-6Q3LI70 58 aa6.86□□□□□ -1.31
LIG1-219ENST00000600055 CYSTM1Q9H1C7 97 aa6.85□□□□□ -1.31
LIG1-219ENST00000600055 SPRR2GQ9BYE4 73 aa6.83□□□□□ -1.32
LIG1-219ENST00000600055 H0YAA0 97 aa6.8□□□□□ -1.32
LIG1-219ENST00000600055 TMEM258P61165 79 aa6.8□□□□□ -1.32
LIG1-219ENST00000600055 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.79□□□□□ -1.32
LIG1-219ENST00000600055 MT1BP07438 61 aa6.78□□□□□ -1.32
LIG1-219ENST00000600055 KRTAP19-8Q3LI54 63 aa6.78□□□□□ -1.32
LIG1-219ENST00000600055 ADM2Q7Z4H4 148 aa6.78□□□□□ -1.32
LIG1-219ENST00000600055 PCP4P48539 62 aa6.77□□□□□ -1.33
LIG1-219ENST00000600055 COA5Q86WW8 74 aa6.76□□□□□ -1.33
LIG1-219ENST00000600055 Q5VV11 94 aa6.75□□□□□ -1.33
LIG1-219ENST00000600055 CRIPTQ9P021 101 aa6.75□□□□□ -1.33
LIG1-219ENST00000600055 P0C880 135 aa6.67□□□□□ -1.34
LIG1-219ENST00000600055 KRTAP9-7A8MTY7 169 aa6.64□□□□□ -1.35
LIG1-219ENST00000600055 SEC61GP60059 68 aa6.62□□□□□ -1.35
LIG1-219ENST00000600055 A6NN06 94 aa6.6□□□□□ -1.35
LIG1-219ENST00000600055 SERP1Q9Y6X1 66 aa6.59□□□□□ -1.35
LIG1-219ENST00000600055 KRTAP10-5P60370 271 aa6.57□□□□□ -1.36
LIG1-219ENST00000600055 R4GN34 69 aa6.57□□□□□ -1.36
LIG1-219ENST00000600055 MACF1Q9UPN3 7388 aaKnown RBP6.54□□□□□ -1.36
LIG1-219ENST00000600055 M0QZ58 72 aa6.54□□□□□ -1.36
LIG1-219ENST00000600055 A0A1B0GU69 56 aa6.48□□□□□ -1.37
LIG1-219ENST00000600055 PRR15LQ9BU68 103 aa6.48□□□□□ -1.37
LIG1-219ENST00000600055 SYNE2Q8WXH0 6885 aaKnown RBP6.45□□□□□ -1.38
LIG1-219ENST00000600055 LINC01554Q52M75 96 aa6.45□□□□□ -1.38
LIG1-219ENST00000600055 PLAC4Q8WY50 150 aa6.45□□□□□ -1.38
LIG1-219ENST00000600055 RPS28P62857 69 aaKnown RBP6.44□□□□□ -1.38
LIG1-219ENST00000600055 V9GYY9 64 aa6.43□□□□□ -1.38
LIG1-219ENST00000600055 LINC01558Q9Y6Z2 57 aa6.42□□□□□ -1.38
LIG1-219ENST00000600055 MT1XP80297 61 aa6.4□□□□□ -1.38
LIG1-219ENST00000600055 KRTAP6-3Q3LI67 103 aa6.39□□□□□ -1.39
LIG1-219ENST00000600055 SMIM26A0A096LP01 95 aa6.38□□□□□ -1.39
LIG1-219ENST00000600055 A0A1B0GU33 70 aa6.38□□□□□ -1.39
LIG1-219ENST00000600055 PRO2289Q9P1D8 64 aa6.34□□□□□ -1.39
LIG1-219ENST00000600055 Q1T7F1 81 aa6.32□□□□□ -1.4
LIG1-219ENST00000600055 KRTAP13-4Q3LI77 160 aa6.31□□□□□ -1.4
LIG1-219ENST00000600055 UQCR11O14957 56 aa6.24□□□□□ -1.41
LIG1-219ENST00000600055 KRTAP23-1A1A580 65 aa6.21□□□□□ -1.42
LIG1-219ENST00000600055 SPATA8Q6RVD6 105 aa6.2□□□□□ -1.42
LIG1-219ENST00000600055 PSPHP1O15172 72 aa6.19□□□□□ -1.42
LIG1-219ENST00000600055 KRTAP5-9P26371 169 aa6.17□□□□□ -1.42
LIG1-219ENST00000600055 KRTAP12-2P59991 146 aa6.17□□□□□ -1.42
LIG1-219ENST00000600055 A0A0D9SG42 100 aa6.15□□□□□ -1.42
LIG1-219ENST00000600055 KMT2DO14686 5537 aa6.15□□□□□ -1.42
LIG1-219ENST00000600055 KRTAP10-7P60409 375 aaPredicted RBP6.12□□□□□ -1.43
LIG1-219ENST00000600055 MUC12Q9UKN1 5478 aa6.11□□□□□ -1.43
LIG1-219ENST00000600055 MIR22HGQ0VDD5 57 aa6.11□□□□□ -1.43
LIG1-219ENST00000600055 KRTAP4-8A0A0G2JLE6 195 aa6.09□□□□□ -1.43
LIG1-219ENST00000600055 KRTAP4-8Q9BYQ9 185 aa6.09□□□□□ -1.43
LIG1-219ENST00000600055 SPINT4Q6UDR6 99 aa6.08□□□□□ -1.44
LIG1-219ENST00000600055 KRTAP8-1Q8IUC2 63 aa6.08□□□□□ -1.44
LIG1-219ENST00000600055 LOC100996750A0A140TA64 210 aa6.07□□□□□ -1.44
LIG1-219ENST00000600055 A6NED7 52 aa6.07□□□□□ -1.44
LIG1-219ENST00000600055 CAMK2N1Q7Z7J9 78 aa6.07□□□□□ -1.44
LIG1-219ENST00000600055 KRTAP4-6Q9BYQ5 205 aa6.07□□□□□ -1.44
LIG1-219ENST00000600055 KRTAP10-12P60413 245 aa6.06□□□□□ -1.44
LIG1-219ENST00000600055 NEBP20929 6669 aa6.06□□□□□ -1.44
LIG1-219ENST00000600055 SPRR2FQ96RM1 72 aa6.05□□□□□ -1.44
LIG1-219ENST00000600055 A8MU10 97 aa6.04□□□□□ -1.44
LIG1-219ENST00000600055 K7ERS5 55 aa6.02□□□□□ -1.45
LIG1-219ENST00000600055 KRTAP12-1P59990 96 aa6.01□□□□□ -1.45
LIG1-219ENST00000600055 MDN1Q9NU22 5596 aa5.99□□□□□ -1.45
LIG1-219ENST00000600055 KRTAP19-4Q3LI73 84 aa5.96□□□□□ -1.46
LIG1-219ENST00000600055 SPRR2EP22531 72 aa5.92□□□□□ -1.46
LIG1-219ENST00000600055 SPRR2BP35325 72 aa5.92□□□□□ -1.46
LIG1-219ENST00000600055 SPRR2AP35326 72 aa5.92□□□□□ -1.46
LIG1-219ENST00000600055 CDC42SE1Q9NRR8 79 aa5.89□□□□□ -1.47
LIG1-219ENST00000600055 LCE1AQ5T7P2 110 aa5.86□□□□□ -1.47
LIG1-219ENST00000600055 A0A0A0MQY5 61 aa5.85□□□□□ -1.47
LIG1-219ENST00000600055 KRTAP20-1Q3LI63 56 aa5.84□□□□□ -1.47
LIG1-219ENST00000600055 C10orf95Q9H7T3 257 aa5.73□□□□□ -1.49
LIG1-219ENST00000600055 KRTAP2-3P0C7H8 128 aa5.72□□□□□ -1.49
LIG1-219ENST00000600055 SPRR2DP22532 72 aa5.72□□□□□ -1.49
LIG1-219ENST00000600055 KRTAP2-4Q9BYR9 128 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms