RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MPLKIPQ8TAP9 179 aa6.92□□□□□ -1.3
SHKBP1-218ENST00000598907 MP68P56378 58 aa6.91□□□□□ -1.3
SHKBP1-218ENST00000598907 H3BPC8 53 aa6.9□□□□□ -1.3
SHKBP1-218ENST00000598907 SERP2Q8N6R1 65 aa6.9□□□□□ -1.3
SHKBP1-218ENST00000598907 CYP4F30PQ9H0H9 118 aa6.9□□□□□ -1.3
SHKBP1-218ENST00000598907 C1orf64Q8NEQ6 169 aa6.88□□□□□ -1.31
SHKBP1-218ENST00000598907 LINC00208Q96KT6 92 aa6.88□□□□□ -1.31
SHKBP1-218ENST00000598907 SVIPQ8NHG7 77 aa6.87□□□□□ -1.31
SHKBP1-218ENST00000598907 FAM236DA0A1B0GTK5 79 aa6.85□□□□□ -1.31
SHKBP1-218ENST00000598907 FAM236CP0DP71 79 aa6.85□□□□□ -1.31
SHKBP1-218ENST00000598907 COX7CP15954 63 aa6.82□□□□□ -1.32
SHKBP1-218ENST00000598907 RBM12B-AS1Q9P1G2 102 aa6.82□□□□□ -1.32
SHKBP1-218ENST00000598907 KLKP1Q107X0 134 aa6.81□□□□□ -1.32
SHKBP1-218ENST00000598907 ANAPC13Q9BS18 74 aa6.79□□□□□ -1.32
SHKBP1-218ENST00000598907 C4orf26Q17RF5 130 aa6.78□□□□□ -1.32
SHKBP1-218ENST00000598907 C20orf197Q8N268 126 aa6.77□□□□□ -1.33
SHKBP1-218ENST00000598907 KRTAP3-1Q9BYR8 98 aa6.75□□□□□ -1.33
SHKBP1-218ENST00000598907 SNURFQ9Y675 71 aa6.75□□□□□ -1.33
SHKBP1-218ENST00000598907 KRTAP3-3Q9BYR6 98 aa6.73□□□□□ -1.33
SHKBP1-218ENST00000598907 KRTAP3-2Q9BYR7 98 aa6.73□□□□□ -1.33
SHKBP1-218ENST00000598907 MDN1Q9NU22 5596 aa6.73□□□□□ -1.33
SHKBP1-218ENST00000598907 H1FX-AS1Q4G0G2 97 aa6.69□□□□□ -1.34
SHKBP1-218ENST00000598907 CCDC179H3BU77 68 aa6.67□□□□□ -1.34
SHKBP1-218ENST00000598907 KMT2DO14686 5537 aa6.66□□□□□ -1.34
SHKBP1-218ENST00000598907 CYSTM1Q9H1C7 97 aa6.66□□□□□ -1.34
SHKBP1-218ENST00000598907 A8MUN3 132 aa6.64□□□□□ -1.35
SHKBP1-218ENST00000598907 NDUFC1O43677 76 aa6.63□□□□□ -1.35
SHKBP1-218ENST00000598907 SPANXA2-OT1Q8N9U9 137 aa6.63□□□□□ -1.35
SHKBP1-218ENST00000598907 H7BZZ5 65 aa6.62□□□□□ -1.35
SHKBP1-218ENST00000598907 KRTAP2-3P0C7H8 128 aa6.62□□□□□ -1.35
SHKBP1-218ENST00000598907 DMAC1Q96GE9 116 aa6.62□□□□□ -1.35
SHKBP1-218ENST00000598907 KRTAP2-4Q9BYR9 128 aa6.62□□□□□ -1.35
SHKBP1-218ENST00000598907 S4R3F8 94 aa6.55□□□□□ -1.36
SHKBP1-218ENST00000598907 LCA10Q71F78 164 aa6.54□□□□□ -1.36
SHKBP1-218ENST00000598907 A6NN06 94 aa6.53□□□□□ -1.36
SHKBP1-218ENST00000598907 ACYP2P14621 99 aa6.53□□□□□ -1.36
SHKBP1-218ENST00000598907 KRTAP5-9P26371 169 aa6.53□□□□□ -1.36
SHKBP1-218ENST00000598907 GPR98Q8WXG9 6306 aa6.48□□□□□ -1.37
SHKBP1-218ENST00000598907 CSAG1Q6PB30 78 aa6.45□□□□□ -1.38
SHKBP1-218ENST00000598907 TMEM258P61165 79 aa6.43□□□□□ -1.38
SHKBP1-218ENST00000598907 ATP5EP56381 51 aaPredicted RBP6.42□□□□□ -1.38
SHKBP1-218ENST00000598907 COA5Q86WW8 74 aa6.39□□□□□ -1.39
SHKBP1-218ENST00000598907 CHKB-CPT1BH3BT56 60 aa6.36□□□□□ -1.39
SHKBP1-218ENST00000598907 KRTAP2-2Q9BYT5 123 aa6.36□□□□□ -1.39
SHKBP1-218ENST00000598907 KRTAP2-1Q9BYU5 128 aa6.36□□□□□ -1.39
SHKBP1-218ENST00000598907 SPRR2EP22531 72 aa6.35□□□□□ -1.39
SHKBP1-218ENST00000598907 SPRR2BP35325 72 aa6.35□□□□□ -1.39
SHKBP1-218ENST00000598907 SPRR2AP35326 72 aa6.35□□□□□ -1.39
SHKBP1-218ENST00000598907 SPTSSBQ8NFR3 76 aa6.33□□□□□ -1.4
SHKBP1-218ENST00000598907 H0YAA0 97 aa6.32□□□□□ -1.4
SHKBP1-218ENST00000598907 MT1BP07438 61 aa6.29□□□□□ -1.4
SHKBP1-218ENST00000598907 KRTAP10-5P60370 271 aa6.28□□□□□ -1.4
SHKBP1-218ENST00000598907 SPRR2FQ96RM1 72 aa6.27□□□□□ -1.41
SHKBP1-218ENST00000598907 Q5VV11 94 aa6.25□□□□□ -1.41
SHKBP1-218ENST00000598907 SERP1Q9Y6X1 66 aa6.23□□□□□ -1.41
SHKBP1-218ENST00000598907 ADM2Q7Z4H4 148 aa6.22□□□□□ -1.41
SHKBP1-218ENST00000598907 P0C880 135 aa6.16□□□□□ -1.42
SHKBP1-218ENST00000598907 SPRR2DP22532 72 aa6.15□□□□□ -1.42
SHKBP1-218ENST00000598907 CRIPTQ9P021 101 aa6.14□□□□□ -1.43
SHKBP1-218ENST00000598907 RPS28P62857 69 aaKnown RBP6.12□□□□□ -1.43
SHKBP1-218ENST00000598907 LCE1AQ5T7P2 110 aa6.12□□□□□ -1.43
SHKBP1-218ENST00000598907 KRTAP19-8Q3LI54 63 aa6.11□□□□□ -1.43
SHKBP1-218ENST00000598907 SPRR2GQ9BYE4 73 aa6.1□□□□□ -1.43
SHKBP1-218ENST00000598907 LINC01558Q9Y6Z2 57 aa6.09□□□□□ -1.43
SHKBP1-218ENST00000598907 SEC61GP60059 68 aa6.06□□□□□ -1.44
SHKBP1-218ENST00000598907 A0A1B0GU69 56 aa6.04□□□□□ -1.44
SHKBP1-218ENST00000598907 SMIM26A0A096LP01 95 aa6.03□□□□□ -1.44
SHKBP1-218ENST00000598907 LCE3BQ5TA77 95 aa6.02□□□□□ -1.45
SHKBP1-218ENST00000598907 R4GN34 69 aa6.01□□□□□ -1.45
SHKBP1-218ENST00000598907 Q1T7F1 81 aa6□□□□□ -1.45
SHKBP1-218ENST00000598907 M0QZ58 72 aa5.99□□□□□ -1.45
SHKBP1-218ENST00000598907 KRTAP8-1Q8IUC2 63 aa5.99□□□□□ -1.45
SHKBP1-218ENST00000598907 PRR15LQ9BU68 103 aa5.98□□□□□ -1.45
SHKBP1-218ENST00000598907 V9GYY9 64 aa5.98□□□□□ -1.45
SHKBP1-218ENST00000598907 A0A1B0GU33 70 aa5.96□□□□□ -1.46
SHKBP1-218ENST00000598907 KRTAP13-4Q3LI77 160 aa5.96□□□□□ -1.46
SHKBP1-218ENST00000598907 DSTQ03001 7570 aaKnown RBP5.94□□□□□ -1.46
SHKBP1-218ENST00000598907 SPATA8Q6RVD6 105 aa5.87□□□□□ -1.47
SHKBP1-218ENST00000598907 PSPHP1O15172 72 aa5.86□□□□□ -1.47
SHKBP1-218ENST00000598907 LINC01554Q52M75 96 aa5.85□□□□□ -1.47
SHKBP1-218ENST00000598907 KRTAP4-9Q9BYQ8 210 aa5.84□□□□□ -1.47
SHKBP1-218ENST00000598907 UQCR11O14957 56 aa5.82□□□□□ -1.48
SHKBP1-218ENST00000598907 PRO0628Q9UI54 55 aa5.8□□□□□ -1.48
SHKBP1-218ENST00000598907 PLAC4Q8WY50 150 aa5.77□□□□□ -1.49
SHKBP1-218ENST00000598907 A0A0D9SG42 100 aa5.75□□□□□ -1.49
SHKBP1-218ENST00000598907 A8MU10 97 aa5.75□□□□□ -1.49
SHKBP1-218ENST00000598907 KRTAP4-8A0A0G2JLE6 195 aa5.74□□□□□ -1.49
SHKBP1-218ENST00000598907 KRTAP4-8Q9BYQ9 185 aa5.74□□□□□ -1.49
SHKBP1-218ENST00000598907 PRO2289Q9P1D8 64 aa5.74□□□□□ -1.49
SHKBP1-218ENST00000598907 MT1XP80297 61 aa5.72□□□□□ -1.49
SHKBP1-218ENST00000598907 MIR22HGQ0VDD5 57 aa5.72□□□□□ -1.49
SHKBP1-218ENST00000598907 KRTAP12-1P59990 96 aa5.71□□□□□ -1.5
SHKBP1-218ENST00000598907 HMCN1Q96RW7 5635 aa5.7□□□□□ -1.5
SHKBP1-218ENST00000598907 A6NED7 52 aa5.68□□□□□ -1.5
SHKBP1-218ENST00000598907 AHNAK2Q8IVF2 5795 aa5.68□□□□□ -1.5
SHKBP1-218ENST00000598907 KRTAP12-2P59991 146 aa5.67□□□□□ -1.5
SHKBP1-218ENST00000598907 SPINT4Q6UDR6 99 aa5.65□□□□□ -1.5
SHKBP1-218ENST00000598907 LCE1DQ5T752 114 aa5.58□□□□□ -1.52
SHKBP1-218ENST00000598907 CAMK2N1Q7Z7J9 78 aa5.58□□□□□ -1.52
SHKBP1-218ENST00000598907 CDC42SE1Q9NRR8 79 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 238.1 ms