RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SERP1Q9Y6X1 66 aa7.23□□□□□ -1.25
SHKBP1-211ENST00000595945 S4R3F8 94 aa7.22□□□□□ -1.25
SHKBP1-211ENST00000595945 LCA10Q71F78 164 aa7.21□□□□□ -1.26
SHKBP1-211ENST00000595945 KRTAP3-3Q9BYR6 98 aa7.21□□□□□ -1.26
SHKBP1-211ENST00000595945 CHKB-CPT1BH3BT56 60 aa7.17□□□□□ -1.26
SHKBP1-211ENST00000595945 MT1HP80294 61 aa7.15□□□□□ -1.26
SHKBP1-211ENST00000595945 RPS28P62857 69 aaKnown RBP7.14□□□□□ -1.27
SHKBP1-211ENST00000595945 SPTSSBQ8NFR3 76 aa7.09□□□□□ -1.27
SHKBP1-211ENST00000595945 CSAG1Q6PB30 78 aa7.08□□□□□ -1.28
SHKBP1-211ENST00000595945 LCE2AQ5TA79 106 aaPredicted RBP7.03□□□□□ -1.28
SHKBP1-211ENST00000595945 SMIM26A0A096LP01 95 aa7□□□□□ -1.29
SHKBP1-211ENST00000595945 M0R2T5 61 aa6.98□□□□□ -1.29
SHKBP1-211ENST00000595945 H0YAA0 97 aa6.96□□□□□ -1.3
SHKBP1-211ENST00000595945 LINC01558Q9Y6Z2 57 aa6.95□□□□□ -1.3
SHKBP1-211ENST00000595945 KRTAP10-6P60371 365 aaPredicted RBP6.92□□□□□ -1.3
SHKBP1-211ENST00000595945 Q1T7F1 81 aa6.92□□□□□ -1.3
SHKBP1-211ENST00000595945 KRTAP3-2Q9BYR7 98 aa6.92□□□□□ -1.3
SHKBP1-211ENST00000595945 LORP23490 312 aaPredicted RBP6.89□□□□□ -1.31
SHKBP1-211ENST00000595945 V9GYY9 64 aa6.89□□□□□ -1.31
SHKBP1-211ENST00000595945 KRTAP9-8Q9BYQ0 159 aa6.88□□□□□ -1.31
SHKBP1-211ENST00000595945 ADM2Q7Z4H4 148 aa6.87□□□□□ -1.31
SHKBP1-211ENST00000595945 MT2AP02795 61 aa6.85□□□□□ -1.31
SHKBP1-211ENST00000595945 A0A1B0GU69 56 aa6.84□□□□□ -1.31
SHKBP1-211ENST00000595945 P0C880 135 aa6.84□□□□□ -1.31
SHKBP1-211ENST00000595945 SEC61GP60059 68 aa6.83□□□□□ -1.32
SHKBP1-211ENST00000595945 PRR15LQ9BU68 103 aa6.8□□□□□ -1.32
SHKBP1-211ENST00000595945 MT1FP04733 61 aa6.79□□□□□ -1.32
SHKBP1-211ENST00000595945 PSPHP1O15172 72 aa6.75□□□□□ -1.33
SHKBP1-211ENST00000595945 Q5VV11 94 aa6.75□□□□□ -1.33
SHKBP1-211ENST00000595945 KRTAP10-10P60014 251 aa6.72□□□□□ -1.33
SHKBP1-211ENST00000595945 A0A1B0GU33 70 aa6.71□□□□□ -1.34
SHKBP1-211ENST00000595945 CRIPTQ9P021 101 aa6.7□□□□□ -1.34
SHKBP1-211ENST00000595945 KRTAP13-4Q3LI77 160 aa6.66□□□□□ -1.34
SHKBP1-211ENST00000595945 KRTAP9-3Q9BYQ3 159 aa6.65□□□□□ -1.34
SHKBP1-211ENST00000595945 M0QZ58 72 aa6.64□□□□□ -1.35
SHKBP1-211ENST00000595945 KRTAP19-1Q8IUB9 90 aa6.63□□□□□ -1.35
SHKBP1-211ENST00000595945 SPRR2GQ9BYE4 73 aa6.62□□□□□ -1.35
SHKBP1-211ENST00000595945 R4GN34 69 aa6.62□□□□□ -1.35
SHKBP1-211ENST00000595945 UQCR11O14957 56 aa6.61□□□□□ -1.35
SHKBP1-211ENST00000595945 SPATA8Q6RVD6 105 aa6.59□□□□□ -1.35
SHKBP1-211ENST00000595945 A6NED7 52 aa6.54□□□□□ -1.36
SHKBP1-211ENST00000595945 MIR22HGQ0VDD5 57 aa6.52□□□□□ -1.37
SHKBP1-211ENST00000595945 KRTAP19-8Q3LI54 63 aa6.5□□□□□ -1.37
SHKBP1-211ENST00000595945 A8MU10 97 aa6.48□□□□□ -1.37
SHKBP1-211ENST00000595945 LCE2BO14633 110 aa6.48□□□□□ -1.37
SHKBP1-211ENST00000595945 LINC01554Q52M75 96 aa6.46□□□□□ -1.38
SHKBP1-211ENST00000595945 A0A0D9SG42 100 aa6.45□□□□□ -1.38
SHKBP1-211ENST00000595945 LCE2DQ5TA82 110 aaPredicted RBP6.45□□□□□ -1.38
SHKBP1-211ENST00000595945 CDC42SE1Q9NRR8 79 aa6.45□□□□□ -1.38
SHKBP1-211ENST00000595945 A6NN06 94 aa6.44□□□□□ -1.38
SHKBP1-211ENST00000595945 MT1BP07438 61 aa6.41□□□□□ -1.38
SHKBP1-211ENST00000595945 USH2AO75445 5202 aa6.4□□□□□ -1.39
SHKBP1-211ENST00000595945 KRTAP12-1P59990 96 aa6.39□□□□□ -1.39
SHKBP1-211ENST00000595945 KRTAP12-2P59991 146 aa6.35□□□□□ -1.39
SHKBP1-211ENST00000595945 BRK1Q8WUW1 75 aa6.33□□□□□ -1.4
SHKBP1-211ENST00000595945 SPINT4Q6UDR6 99 aa6.31□□□□□ -1.4
SHKBP1-211ENST00000595945 PLAC4Q8WY50 150 aa6.3□□□□□ -1.4
SHKBP1-211ENST00000595945 SSPOA2VEC9 5147 aa6.24□□□□□ -1.41
SHKBP1-211ENST00000595945 KRTAP9-2Q9BYQ4 174 aa6.24□□□□□ -1.41
SHKBP1-211ENST00000595945 K7ERS5 55 aa6.23□□□□□ -1.41
SHKBP1-211ENST00000595945 CAMK2N1Q7Z7J9 78 aa6.17□□□□□ -1.42
SHKBP1-211ENST00000595945 MT1XP80297 61 aa6.16□□□□□ -1.42
SHKBP1-211ENST00000595945 PRO0628Q9UI54 55 aa6.15□□□□□ -1.42
SHKBP1-211ENST00000595945 KRTAP19-6Q3LI70 58 aa6.14□□□□□ -1.43
SHKBP1-211ENST00000595945 KRTAP10-5P60370 271 aa6.13□□□□□ -1.43
SHKBP1-211ENST00000595945 C10orf95Q9H7T3 257 aa6.07□□□□□ -1.44
SHKBP1-211ENST00000595945 PRO2289Q9P1D8 64 aa6.06□□□□□ -1.44
SHKBP1-211ENST00000595945 FSIP2Q5CZC0 6907 aa6.02□□□□□ -1.45
SHKBP1-211ENST00000595945 CRCT1Q9UGL9 99 aa6□□□□□ -1.45
SHKBP1-211ENST00000595945 ROMO1P60602 79 aa5.98□□□□□ -1.45
SHKBP1-211ENST00000595945 PMAIP1Q13794 54 aa5.98□□□□□ -1.45
SHKBP1-211ENST00000595945 FCGBPQ9Y6R7 5405 aaPredicted RBP5.95□□□□□ -1.46
SHKBP1-211ENST00000595945 KRTAP10-7P60409 375 aaPredicted RBP5.88□□□□□ -1.47
SHKBP1-211ENST00000595945 TNP1P09430 55 aa5.87□□□□□ -1.47
SHKBP1-211ENST00000595945 KRTAP25-1Q3LHN0 102 aa5.87□□□□□ -1.47
SHKBP1-211ENST00000595945 KRTAP10-12P60413 245 aa5.85□□□□□ -1.47
SHKBP1-211ENST00000595945 KRTAP9-6A0A140TA67 174 aa5.82□□□□□ -1.48
SHKBP1-211ENST00000595945 KTN1-AS1Q86SY8 53 aa5.71□□□□□ -1.5
SHKBP1-211ENST00000595945 KRTAP23-1A1A580 65 aa5.7□□□□□ -1.5
SHKBP1-211ENST00000595945 KRTAP4-8A0A0G2JLE6 195 aa5.68□□□□□ -1.5
SHKBP1-211ENST00000595945 LCE3AQ5TA76 89 aa5.68□□□□□ -1.5
SHKBP1-211ENST00000595945 KRTAP4-8Q9BYQ9 185 aa5.68□□□□□ -1.5
SHKBP1-211ENST00000595945 PRAC1Q96KF2 57 aa5.65□□□□□ -1.5
SHKBP1-211ENST00000595945 PP632Q6XCG6 107 aa5.62□□□□□ -1.51
SHKBP1-211ENST00000595945 KMT2DO14686 5537 aa5.62□□□□□ -1.51
SHKBP1-211ENST00000595945 KRTAP8-1Q8IUC2 63 aa5.58□□□□□ -1.52
SHKBP1-211ENST00000595945 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.57□□□□□ -1.52
SHKBP1-211ENST00000595945 KRTAP19-5Q3LI72 72 aa5.5□□□□□ -1.53
SHKBP1-211ENST00000595945 KRTAP19-7Q3SYF9 63 aa5.5□□□□□ -1.53
SHKBP1-211ENST00000595945 MACF1Q9UPN3 7388 aaKnown RBP5.47□□□□□ -1.53
SHKBP1-211ENST00000595945 KRTAP12-3P60328 96 aa5.45□□□□□ -1.54
SHKBP1-211ENST00000595945 KRTAP5-9P26371 169 aa5.44□□□□□ -1.54
SHKBP1-211ENST00000595945 KRTAP6-3Q3LI67 103 aa5.42□□□□□ -1.54
SHKBP1-211ENST00000595945 MT1EP04732 61 aa5.41□□□□□ -1.54
SHKBP1-211ENST00000595945 SPRR2FQ96RM1 72 aa5.38□□□□□ -1.55
SHKBP1-211ENST00000595945 SYNE2Q8WXH0 6885 aaKnown RBP5.37□□□□□ -1.55
SHKBP1-211ENST00000595945 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
SHKBP1-211ENST00000595945 MUC12Q9UKN1 5478 aa5.31□□□□□ -1.56
SHKBP1-211ENST00000595945 KRTAP9-7A8MTY7 169 aa5.3□□□□□ -1.56
SHKBP1-211ENST00000595945 KRTAP15-1Q3LI76 137 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms