RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 KRTAP3-3Q9BYR6 98 aa6.73□□□□□ -1.33
LIG1-208ENST00000595758 USH2AO75445 5202 aa6.71□□□□□ -1.34
LIG1-208ENST00000595758 KRTAP9-6A0A140TA67 174 aa6.7□□□□□ -1.34
LIG1-208ENST00000595758 CRCT1Q9UGL9 99 aa6.69□□□□□ -1.34
LIG1-208ENST00000595758 NDUFC1O43677 76 aa6.68□□□□□ -1.34
LIG1-208ENST00000595758 SERP2Q8N6R1 65 aa6.68□□□□□ -1.34
LIG1-208ENST00000595758 DMAC1Q96GE9 116 aa6.66□□□□□ -1.34
LIG1-208ENST00000595758 LCE2BO14633 110 aa6.65□□□□□ -1.34
LIG1-208ENST00000595758 SNURFQ9Y675 71 aa6.65□□□□□ -1.34
LIG1-208ENST00000595758 C20orf197Q8N268 126 aa6.62□□□□□ -1.35
LIG1-208ENST00000595758 SSPOA2VEC9 5147 aa6.57□□□□□ -1.36
LIG1-208ENST00000595758 ACYP2P14621 99 aa6.56□□□□□ -1.36
LIG1-208ENST00000595758 H0YAA0 97 aa6.54□□□□□ -1.36
LIG1-208ENST00000595758 COX7CP15954 63 aa6.53□□□□□ -1.36
LIG1-208ENST00000595758 SPANXA2-OT1Q8N9U9 137 aa6.52□□□□□ -1.37
LIG1-208ENST00000595758 KRTAP19-1Q8IUB9 90 aa6.51□□□□□ -1.37
LIG1-208ENST00000595758 ADM2Q7Z4H4 148 aa6.49□□□□□ -1.37
LIG1-208ENST00000595758 CRIPTQ9P021 101 aa6.48□□□□□ -1.37
LIG1-208ENST00000595758 SPRR2GQ9BYE4 73 aa6.47□□□□□ -1.37
LIG1-208ENST00000595758 CHKB-CPT1BH3BT56 60 aa6.45□□□□□ -1.38
LIG1-208ENST00000595758 ANAPC13Q9BS18 74 aa6.45□□□□□ -1.38
LIG1-208ENST00000595758 SPTSSBQ8NFR3 76 aa6.44□□□□□ -1.38
LIG1-208ENST00000595758 FCGBPQ9Y6R7 5405 aaPredicted RBP6.39□□□□□ -1.39
LIG1-208ENST00000595758 KRTAP19-8Q3LI54 63 aa6.39□□□□□ -1.39
LIG1-208ENST00000595758 H7BZZ5 65 aa6.38□□□□□ -1.39
LIG1-208ENST00000595758 KRTAP19-6Q3LI70 58 aa6.38□□□□□ -1.39
LIG1-208ENST00000595758 Q5VV11 94 aa6.38□□□□□ -1.39
LIG1-208ENST00000595758 CYSTM1Q9H1C7 97 aa6.38□□□□□ -1.39
LIG1-208ENST00000595758 P0C880 135 aa6.37□□□□□ -1.39
LIG1-208ENST00000595758 KRTAP3-2Q9BYR7 98 aa6.36□□□□□ -1.39
LIG1-208ENST00000595758 MT1BP07438 61 aa6.35□□□□□ -1.39
LIG1-208ENST00000595758 COA5Q86WW8 74 aa6.32□□□□□ -1.4
LIG1-208ENST00000595758 CCDC179H3BU77 68 aa6.31□□□□□ -1.4
LIG1-208ENST00000595758 R4GN34 69 aa6.3□□□□□ -1.4
LIG1-208ENST00000595758 M0QZ58 72 aa6.27□□□□□ -1.41
LIG1-208ENST00000595758 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.21□□□□□ -1.42
LIG1-208ENST00000595758 A6NN06 94 aa6.2□□□□□ -1.42
LIG1-208ENST00000595758 LINC01554Q52M75 96 aa6.17□□□□□ -1.42
LIG1-208ENST00000595758 PLAC4Q8WY50 150 aa6.16□□□□□ -1.42
LIG1-208ENST00000595758 ATP5EP56381 51 aaPredicted RBP6.15□□□□□ -1.42
LIG1-208ENST00000595758 KRTAP10-5P60370 271 aa6.15□□□□□ -1.42
LIG1-208ENST00000595758 SEC61GP60059 68 aa6.13□□□□□ -1.43
LIG1-208ENST00000595758 SERP1Q9Y6X1 66 aa6.12□□□□□ -1.43
LIG1-208ENST00000595758 TMEM258P61165 79 aa6.08□□□□□ -1.44
LIG1-208ENST00000595758 MACF1Q9UPN3 7388 aaKnown RBP6.07□□□□□ -1.44
LIG1-208ENST00000595758 KRTAP9-7A8MTY7 169 aa6.05□□□□□ -1.44
LIG1-208ENST00000595758 KRTAP13-4Q3LI77 160 aa6.05□□□□□ -1.44
LIG1-208ENST00000595758 PRO2289Q9P1D8 64 aa6.04□□□□□ -1.44
LIG1-208ENST00000595758 SYNE2Q8WXH0 6885 aaKnown RBP6.02□□□□□ -1.45
LIG1-208ENST00000595758 MT1XP80297 61 aa6.02□□□□□ -1.45
LIG1-208ENST00000595758 A0A1B0GU33 70 aa6□□□□□ -1.45
LIG1-208ENST00000595758 A0A1B0GU69 56 aa6□□□□□ -1.45
LIG1-208ENST00000595758 SPATA8Q6RVD6 105 aa5.94□□□□□ -1.46
LIG1-208ENST00000595758 A0A0D9SG42 100 aa5.91□□□□□ -1.46
LIG1-208ENST00000595758 KRTAP6-3Q3LI67 103 aa5.9□□□□□ -1.46
LIG1-208ENST00000595758 PRR15LQ9BU68 103 aa5.9□□□□□ -1.46
LIG1-208ENST00000595758 LINC01558Q9Y6Z2 57 aa5.89□□□□□ -1.47
LIG1-208ENST00000595758 CAMK2N1Q7Z7J9 78 aa5.85□□□□□ -1.47
LIG1-208ENST00000595758 SMIM26A0A096LP01 95 aa5.83□□□□□ -1.48
LIG1-208ENST00000595758 KRTAP12-2P59991 146 aa5.82□□□□□ -1.48
LIG1-208ENST00000595758 PCP4P48539 62 aa5.81□□□□□ -1.48
LIG1-208ENST00000595758 SPINT4Q6UDR6 99 aa5.81□□□□□ -1.48
LIG1-208ENST00000595758 KRTAP12-1P59990 96 aa5.78□□□□□ -1.48
LIG1-208ENST00000595758 A8MU10 97 aa5.77□□□□□ -1.49
LIG1-208ENST00000595758 KMT2DO14686 5537 aa5.76□□□□□ -1.49
LIG1-208ENST00000595758 KRTAP10-7P60409 375 aaPredicted RBP5.75□□□□□ -1.49
LIG1-208ENST00000595758 KRTAP5-9P26371 169 aa5.72□□□□□ -1.49
LIG1-208ENST00000595758 KRTAP10-12P60413 245 aa5.72□□□□□ -1.49
LIG1-208ENST00000595758 V9GYY9 64 aa5.72□□□□□ -1.49
LIG1-208ENST00000595758 UQCR11O14957 56 aa5.71□□□□□ -1.5
LIG1-208ENST00000595758 KRTAP8-1Q8IUC2 63 aa5.69□□□□□ -1.5
LIG1-208ENST00000595758 MUC12Q9UKN1 5478 aa5.68□□□□□ -1.5
LIG1-208ENST00000595758 Q1T7F1 81 aa5.68□□□□□ -1.5
LIG1-208ENST00000595758 KRTAP4-8A0A0G2JLE6 195 aa5.67□□□□□ -1.5
LIG1-208ENST00000595758 KRTAP4-8Q9BYQ9 185 aa5.67□□□□□ -1.5
LIG1-208ENST00000595758 NEBP20929 6669 aa5.66□□□□□ -1.5
LIG1-208ENST00000595758 PSPHP1O15172 72 aa5.65□□□□□ -1.5
LIG1-208ENST00000595758 RPS28P62857 69 aaKnown RBP5.63□□□□□ -1.51
LIG1-208ENST00000595758 SPRR2FQ96RM1 72 aa5.63□□□□□ -1.51
LIG1-208ENST00000595758 MIR22HGQ0VDD5 57 aa5.61□□□□□ -1.51
LIG1-208ENST00000595758 MDN1Q9NU22 5596 aa5.61□□□□□ -1.51
LIG1-208ENST00000595758 C10orf95Q9H7T3 257 aa5.51□□□□□ -1.53
LIG1-208ENST00000595758 SPRR2EP22531 72 aa5.48□□□□□ -1.53
LIG1-208ENST00000595758 SPRR2BP35325 72 aa5.48□□□□□ -1.53
LIG1-208ENST00000595758 SPRR2AP35326 72 aa5.48□□□□□ -1.53
LIG1-208ENST00000595758 A6NED7 52 aa5.47□□□□□ -1.53
LIG1-208ENST00000595758 K7ERS5 55 aa5.46□□□□□ -1.54
LIG1-208ENST00000595758 TNP1P09430 55 aa5.45□□□□□ -1.54
LIG1-208ENST00000595758 LCE1AQ5T7P2 110 aa5.44□□□□□ -1.54
LIG1-208ENST00000595758 KRTAP19-7Q3SYF9 63 aa5.38□□□□□ -1.55
LIG1-208ENST00000595758 KRTAP20-1Q3LI63 56 aa5.34□□□□□ -1.55
LIG1-208ENST00000595758 MT1EP04732 61 aa5.32□□□□□ -1.56
LIG1-208ENST00000595758 KRTAP19-5Q3LI72 72 aa5.32□□□□□ -1.56
LIG1-208ENST00000595758 LCE3AQ5TA76 89 aa5.32□□□□□ -1.56
LIG1-208ENST00000595758 SPRR2DP22532 72 aa5.29□□□□□ -1.56
LIG1-208ENST00000595758 KRTAP2-3P0C7H8 128 aa5.28□□□□□ -1.56
LIG1-208ENST00000595758 KRTAP25-1Q3LHN0 102 aa5.28□□□□□ -1.56
LIG1-208ENST00000595758 KRTAP2-4Q9BYR9 128 aa5.28□□□□□ -1.56
LIG1-208ENST00000595758 CDC42SE1Q9NRR8 79 aa5.27□□□□□ -1.57
LIG1-208ENST00000595758 KRTAP19-3Q7Z4W3 81 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms