RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 MUC2Q02817 5179 aa10.42□□□□□ -0.74
PNKP-203ENST00000593946 UBR4Q5T4S7 5183 aa10.4□□□□□ -0.75
PNKP-203ENST00000593946 H1FX-AS1Q4G0G2 97 aa10.39□□□□□ -0.75
PNKP-203ENST00000593946 CHKB-CPT1BH3BT56 60 aa10.38□□□□□ -0.75
PNKP-203ENST00000593946 KRTAP19-2Q3LHN2 52 aa10.38□□□□□ -0.75
PNKP-203ENST00000593946 PSPHP1O15172 72 aa10.36□□□□□ -0.75
PNKP-203ENST00000593946 Q5VV11 94 aa10.3□□□□□ -0.76
PNKP-203ENST00000593946 S4R3F8 94 aa10.29□□□□□ -0.76
PNKP-203ENST00000593946 RNF213Q63HN8 5207 aa10.28□□□□□ -0.76
PNKP-203ENST00000593946 LCA10Q71F78 164 aa10.27□□□□□ -0.76
PNKP-203ENST00000593946 PRR15LQ9BU68 103 aa10.24□□□□□ -0.77
PNKP-203ENST00000593946 KRTAP3-3Q9BYR6 98 aa10.24□□□□□ -0.77
PNKP-203ENST00000593946 SPTSSBQ8NFR3 76 aa10.21□□□□□ -0.78
PNKP-203ENST00000593946 LINC01558Q9Y6Z2 57 aa10.19□□□□□ -0.78
PNKP-203ENST00000593946 PMAIP1Q13794 54 aa10.19□□□□□ -0.78
PNKP-203ENST00000593946 LCE2CQ5TA81 110 aa10.16□□□□□ -0.78
PNKP-203ENST00000593946 FLGP20930 4061 aaPredicted RBP10.14□□□□□ -0.79
PNKP-203ENST00000593946 A6NED7 52 aa10.11□□□□□ -0.79
PNKP-203ENST00000593946 CDC42SE1Q9NRR8 79 aa10.09□□□□□ -0.79
PNKP-203ENST00000593946 CSAG1Q6PB30 78 aa10.06□□□□□ -0.8
PNKP-203ENST00000593946 FAT4Q6V0I7 4981 aa9.99□□□□□ -0.81
PNKP-203ENST00000593946 SEC61GP60059 68 aa9.98□□□□□ -0.81
PNKP-203ENST00000593946 KTN1-AS1Q86SY8 53 aa9.96□□□□□ -0.81
PNKP-203ENST00000593946 MT1HP80294 61 aa9.95□□□□□ -0.82
PNKP-203ENST00000593946 A0A1B0GU69 56 aa9.94□□□□□ -0.82
PNKP-203ENST00000593946 A8MU10 97 aa9.9□□□□□ -0.83
PNKP-203ENST00000593946 A6NN06 94 aa9.88□□□□□ -0.83
PNKP-203ENST00000593946 H0YAA0 97 aa9.86□□□□□ -0.83
PNKP-203ENST00000593946 KRTAP3-2Q9BYR7 98 aa9.85□□□□□ -0.83
PNKP-203ENST00000593946 KRTAP10-6P60371 365 aaPredicted RBP9.82□□□□□ -0.84
PNKP-203ENST00000593946 ADM2Q7Z4H4 148 aa9.82□□□□□ -0.84
PNKP-203ENST00000593946 M0R2T5 61 aa9.81□□□□□ -0.84
PNKP-203ENST00000593946 P0C880 135 aa9.76□□□□□ -0.85
PNKP-203ENST00000593946 A0A1B0GU33 70 aa9.68□□□□□ -0.86
PNKP-203ENST00000593946 LCE2AQ5TA79 106 aaPredicted RBP9.66□□□□□ -0.86
PNKP-203ENST00000593946 SPATA8Q6RVD6 105 aa9.66□□□□□ -0.86
PNKP-203ENST00000593946 UQCR11O14957 56 aa9.65□□□□□ -0.87
PNKP-203ENST00000593946 MIR22HGQ0VDD5 57 aa9.59□□□□□ -0.87
PNKP-203ENST00000593946 KRTAP9-8Q9BYQ0 159 aa9.58□□□□□ -0.88
PNKP-203ENST00000593946 LORP23490 312 aaPredicted RBP9.56□□□□□ -0.88
PNKP-203ENST00000593946 MT2AP02795 61 aa9.53□□□□□ -0.88
PNKP-203ENST00000593946 KRTAP13-4Q3LI77 160 aa9.53□□□□□ -0.88
PNKP-203ENST00000593946 M0QZ58 72 aa9.5□□□□□ -0.89
PNKP-203ENST00000593946 MT1FP04733 61 aa9.48□□□□□ -0.89
PNKP-203ENST00000593946 R4GN34 69 aa9.48□□□□□ -0.89
PNKP-203ENST00000593946 CRIPTQ9P021 101 aa9.45□□□□□ -0.9
PNKP-203ENST00000593946 KRTAP10-10P60014 251 aa9.43□□□□□ -0.9
PNKP-203ENST00000593946 A0A0D9SG42 100 aa9.31□□□□□ -0.92
PNKP-203ENST00000593946 SPRR2GQ9BYE4 73 aa9.31□□□□□ -0.92
PNKP-203ENST00000593946 KRTAP19-1Q8IUB9 90 aa9.29□□□□□ -0.92
PNKP-203ENST00000593946 LINC01554Q52M75 96 aa9.28□□□□□ -0.92
PNKP-203ENST00000593946 PRAC1Q96KF2 57 aa9.26□□□□□ -0.93
PNKP-203ENST00000593946 KRTAP9-3Q9BYQ3 159 aa9.24□□□□□ -0.93
PNKP-203ENST00000593946 KRTAP12-1P59990 96 aa9.17□□□□□ -0.94
PNKP-203ENST00000593946 KRTAP12-2P59991 146 aa9.14□□□□□ -0.95
PNKP-203ENST00000593946 K7ERS5 55 aa9.11□□□□□ -0.95
PNKP-203ENST00000593946 SPINT4Q6UDR6 99 aa9.09□□□□□ -0.95
PNKP-203ENST00000593946 KRTAP19-8Q3LI54 63 aa9.08□□□□□ -0.96
PNKP-203ENST00000593946 LCE2BO14633 110 aa9□□□□□ -0.97
PNKP-203ENST00000593946 MT1BP07438 61 aa8.97□□□□□ -0.97
PNKP-203ENST00000593946 KRTAP9-2Q9BYQ4 174 aa8.94□□□□□ -0.98
PNKP-203ENST00000593946 KRTAP25-1Q3LHN0 102 aa8.93□□□□□ -0.98
PNKP-203ENST00000593946 PLAC4Q8WY50 150 aa8.93□□□□□ -0.98
PNKP-203ENST00000593946 CAMK2N1Q7Z7J9 78 aa8.85□□□□□ -0.99
PNKP-203ENST00000593946 LCE2DQ5TA82 110 aaPredicted RBP8.8□□□□□ -1
PNKP-203ENST00000593946 ROMO1P60602 79 aa8.78□□□□□ -1
PNKP-203ENST00000593946 USH2AO75445 5202 aa8.72□□□□□ -1.01
PNKP-203ENST00000593946 KRTAP9-6A0A140TA67 174 aa8.68□□□□□ -1.02
PNKP-203ENST00000593946 C10orf95Q9H7T3 257 aa8.68□□□□□ -1.02
PNKP-203ENST00000593946 MT1XP80297 61 aa8.65□□□□□ -1.03
PNKP-203ENST00000593946 KRTAP10-5P60370 271 aa8.63□□□□□ -1.03
PNKP-203ENST00000593946 PRO2289Q9P1D8 64 aa8.54□□□□□ -1.04
PNKP-203ENST00000593946 SSPOA2VEC9 5147 aa8.5□□□□□ -1.05
PNKP-203ENST00000593946 KRTAP19-6Q3LI70 58 aa8.47□□□□□ -1.05
PNKP-203ENST00000593946 CRCT1Q9UGL9 99 aa8.44□□□□□ -1.06
PNKP-203ENST00000593946 TNP1P09430 55 aa8.41□□□□□ -1.06
PNKP-203ENST00000593946 H3BS24 57 aa8.4□□□□□ -1.06
PNKP-203ENST00000593946 FSIP2Q5CZC0 6907 aa8.38□□□□□ -1.07
PNKP-203ENST00000593946 KRTAP10-7P60409 375 aaPredicted RBP8.29□□□□□ -1.08
PNKP-203ENST00000593946 KRTAP10-12P60413 245 aa8.2□□□□□ -1.1
PNKP-203ENST00000593946 KRTAP23-1A1A580 65 aa8.15□□□□□ -1.11
PNKP-203ENST00000593946 FCGBPQ9Y6R7 5405 aaPredicted RBP8.14□□□□□ -1.11
PNKP-203ENST00000593946 KRTAP15-1Q3LI76 137 aa8.12□□□□□ -1.11
PNKP-203ENST00000593946 PP632Q6XCG6 107 aa8.11□□□□□ -1.11
PNKP-203ENST00000593946 LCE3AQ5TA76 89 aa8.09□□□□□ -1.11
PNKP-203ENST00000593946 KRTAP4-8A0A0G2JLE6 195 aa7.98□□□□□ -1.13
PNKP-203ENST00000593946 KRTAP4-8Q9BYQ9 185 aa7.98□□□□□ -1.13
PNKP-203ENST00000593946 KMT2DO14686 5537 aa7.93□□□□□ -1.14
PNKP-203ENST00000593946 KRTAP8-1Q8IUC2 63 aa7.93□□□□□ -1.14
PNKP-203ENST00000593946 NDUFAF8A1L188 74 aa7.88□□□□□ -1.15
PNKP-203ENST00000593946 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.85□□□□□ -1.15
PNKP-203ENST00000593946 KRTAP9-7A8MTY7 169 aa7.8□□□□□ -1.16
PNKP-203ENST00000593946 KRTAP19-5Q3LI72 72 aa7.78□□□□□ -1.16
PNKP-203ENST00000593946 KRTAP12-3P60328 96 aa7.77□□□□□ -1.17
PNKP-203ENST00000593946 KRTAP19-7Q3SYF9 63 aa7.72□□□□□ -1.17
PNKP-203ENST00000593946 MACF1Q9UPN3 7388 aaKnown RBP7.66□□□□□ -1.18
PNKP-203ENST00000593946 MT1EP04732 61 aa7.58□□□□□ -1.2
PNKP-203ENST00000593946 LUZP6Q538Z0 58 aa7.55□□□□□ -1.2
PNKP-203ENST00000593946 SPRR2FQ96RM1 72 aa7.49□□□□□ -1.21
PNKP-203ENST00000593946 KRTAP5-9P26371 169 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms