RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 ACYP2P14621 99 aa7.09□□□□□ -1.27
VRK3-205ENST00000593919 LCA10Q71F78 164 aa7.09□□□□□ -1.27
VRK3-205ENST00000593919 LRP2P98164 4655 aa7.08□□□□□ -1.28
VRK3-205ENST00000593919 KTN1-AS1Q86SY8 53 aa7.08□□□□□ -1.28
VRK3-205ENST00000593919 DMAC1Q96GE9 116 aa7.08□□□□□ -1.28
VRK3-205ENST00000593919 RPL37P61927 97 aaKnown RBP7.06□□□□□ -1.28
VRK3-205ENST00000593919 ATP11AUNQ6ZP68 121 aa7.05□□□□□ -1.28
VRK3-205ENST00000593919 A6NN06 94 aa7.04□□□□□ -1.28
VRK3-205ENST00000593919 SPTSSBQ8NFR3 76 aa7.03□□□□□ -1.28
VRK3-205ENST00000593919 PRAC1Q96KF2 57 aa7.03□□□□□ -1.28
VRK3-205ENST00000593919 C7orf65Q6ZTY9 151 aa7.02□□□□□ -1.29
VRK3-205ENST00000593919 A6NED7 52 aa7.02□□□□□ -1.29
VRK3-205ENST00000593919 LINC01558Q9Y6Z2 57 aa7.02□□□□□ -1.29
VRK3-205ENST00000593919 CDC42SE1Q9NRR8 79 aa7□□□□□ -1.29
VRK3-205ENST00000593919 HMCN2Q8NDA2 5059 aa6.98□□□□□ -1.29
VRK3-205ENST00000593919 SPINK7P58062 85 aa6.91□□□□□ -1.3
VRK3-205ENST00000593919 LCE2AQ5TA79 106 aaPredicted RBP6.86□□□□□ -1.31
VRK3-205ENST00000593919 LCE2CQ5TA81 110 aa6.86□□□□□ -1.31
VRK3-205ENST00000593919 A0A1B0GU69 56 aa6.84□□□□□ -1.32
VRK3-205ENST00000593919 MUC17Q685J3 4493 aa6.82□□□□□ -1.32
VRK3-205ENST00000593919 KRTAP3-1Q9BYR8 98 aa6.79□□□□□ -1.32
VRK3-205ENST00000593919 KRTAP4-1Q9BYQ7 146 aa6.77□□□□□ -1.33
VRK3-205ENST00000593919 MUC2Q02817 5179 aa6.75□□□□□ -1.33
VRK3-205ENST00000593919 COX6B2Q6YFQ2 88 aa6.73□□□□□ -1.33
VRK3-205ENST00000593919 LINC01554Q52M75 96 aa6.72□□□□□ -1.33
VRK3-205ENST00000593919 LCE2BO14633 110 aa6.71□□□□□ -1.33
VRK3-205ENST00000593919 UBR4Q5T4S7 5183 aa6.71□□□□□ -1.34
VRK3-205ENST00000593919 ADM2Q7Z4H4 148 aa6.69□□□□□ -1.34
VRK3-205ENST00000593919 UQCR11O14957 56 aa6.67□□□□□ -1.34
VRK3-205ENST00000593919 MIR22HGQ0VDD5 57 aa6.64□□□□□ -1.35
VRK3-205ENST00000593919 SPATA8Q6RVD6 105 aa6.64□□□□□ -1.35
VRK3-205ENST00000593919 CAMK2N1Q7Z7J9 78 aa6.64□□□□□ -1.35
VRK3-205ENST00000593919 RNF213Q63HN8 5207 aa6.63□□□□□ -1.35
VRK3-205ENST00000593919 H1FX-AS1Q4G0G2 97 aa6.57□□□□□ -1.36
VRK3-205ENST00000593919 LUZP6Q538Z0 58 aa6.57□□□□□ -1.36
VRK3-205ENST00000593919 LORP23490 312 aaPredicted RBP6.57□□□□□ -1.36
VRK3-205ENST00000593919 KRTAP19-2Q3LHN2 52 aa6.57□□□□□ -1.36
VRK3-205ENST00000593919 K7ERS5 55 aa6.56□□□□□ -1.36
VRK3-205ENST00000593919 FLGP20930 4061 aaPredicted RBP6.54□□□□□ -1.36
VRK3-205ENST00000593919 S4R3F8 94 aa6.53□□□□□ -1.36
VRK3-205ENST00000593919 A0A1B0GU33 70 aa6.51□□□□□ -1.37
VRK3-205ENST00000593919 H0YAA0 97 aa6.49□□□□□ -1.37
VRK3-205ENST00000593919 CSAG1Q6PB30 78 aa6.48□□□□□ -1.37
VRK3-205ENST00000593919 FAT4Q6V0I7 4981 aa6.43□□□□□ -1.38
VRK3-205ENST00000593919 KRTAP10-6P60371 365 aaPredicted RBP6.4□□□□□ -1.39
VRK3-205ENST00000593919 P0C880 135 aa6.33□□□□□ -1.4
VRK3-205ENST00000593919 MT1HP80294 61 aa6.31□□□□□ -1.4
VRK3-205ENST00000593919 KRTAP13-4Q3LI77 160 aa6.31□□□□□ -1.4
VRK3-205ENST00000593919 A0A0D9SG42 100 aa6.27□□□□□ -1.41
VRK3-205ENST00000593919 KRTAP25-1Q3LHN0 102 aa6.27□□□□□ -1.41
VRK3-205ENST00000593919 M0R2T5 61 aa6.25□□□□□ -1.41
VRK3-205ENST00000593919 ROMO1P60602 79 aa6.18□□□□□ -1.42
VRK3-205ENST00000593919 M0QZ58 72 aa6.1□□□□□ -1.43
VRK3-205ENST00000593919 KRTAP12-2P59991 146 aa6.09□□□□□ -1.43
VRK3-205ENST00000593919 SPINT4Q6UDR6 99 aa6.07□□□□□ -1.44
VRK3-205ENST00000593919 KRTAP9-8Q9BYQ0 159 aa6.07□□□□□ -1.44
VRK3-205ENST00000593919 CRIPTQ9P021 101 aa6.07□□□□□ -1.44
VRK3-205ENST00000593919 NDUFAF8A1L188 74 aa6.06□□□□□ -1.44
VRK3-205ENST00000593919 KRTAP12-1P59990 96 aa6.06□□□□□ -1.44
VRK3-205ENST00000593919 MT2AP02795 61 aa6.04□□□□□ -1.44
VRK3-205ENST00000593919 R4GN34 69 aa6.04□□□□□ -1.44
VRK3-205ENST00000593919 MT1FP04733 61 aa6.02□□□□□ -1.45
VRK3-205ENST00000593919 KRTAP10-10P60014 251 aa6□□□□□ -1.45
VRK3-205ENST00000593919 KRTAP19-1Q8IUB9 90 aa5.89□□□□□ -1.47
VRK3-205ENST00000593919 SPRR2GQ9BYE4 73 aa5.89□□□□□ -1.47
VRK3-205ENST00000593919 KRTAP9-3Q9BYQ3 159 aa5.86□□□□□ -1.47
VRK3-205ENST00000593919 C10orf95Q9H7T3 257 aa5.86□□□□□ -1.47
VRK3-205ENST00000593919 KRTAP15-1Q3LI76 137 aa5.82□□□□□ -1.48
VRK3-205ENST00000593919 KRTAP19-8Q3LI54 63 aa5.73□□□□□ -1.49
VRK3-205ENST00000593919 KRTAP19-4Q3LI73 84 aa5.71□□□□□ -1.49
VRK3-205ENST00000593919 MT1BP07438 61 aa5.68□□□□□ -1.5
VRK3-205ENST00000593919 PLAC4Q8WY50 150 aa5.66□□□□□ -1.5
VRK3-205ENST00000593919 USH2AO75445 5202 aa5.61□□□□□ -1.51
VRK3-205ENST00000593919 PRO2289Q9P1D8 64 aa5.51□□□□□ -1.53
VRK3-205ENST00000593919 MT1XP80297 61 aa5.49□□□□□ -1.53
VRK3-205ENST00000593919 FSIP2Q5CZC0 6907 aa5.47□□□□□ -1.53
VRK3-205ENST00000593919 KRTAP10-5P60370 271 aa5.47□□□□□ -1.53
VRK3-205ENST00000593919 SSPOA2VEC9 5147 aa5.46□□□□□ -1.54
VRK3-205ENST00000593919 TNP1P09430 55 aa5.46□□□□□ -1.54
VRK3-205ENST00000593919 KRTAP9-6A0A140TA67 174 aa5.44□□□□□ -1.54
VRK3-205ENST00000593919 PP632Q6XCG6 107 aa5.43□□□□□ -1.54
VRK3-205ENST00000593919 KRTAP9-2Q9BYQ4 174 aa5.4□□□□□ -1.54
VRK3-205ENST00000593919 KRTAP19-6Q3LI70 58 aa5.36□□□□□ -1.55
VRK3-205ENST00000593919 KRTAP10-7P60409 375 aaPredicted RBP5.27□□□□□ -1.57
VRK3-205ENST00000593919 FCGBPQ9Y6R7 5405 aaPredicted RBP5.23□□□□□ -1.57
VRK3-205ENST00000593919 LCE3AQ5TA76 89 aa5.21□□□□□ -1.58
VRK3-205ENST00000593919 KRTAP10-12P60413 245 aa5.19□□□□□ -1.58
VRK3-205ENST00000593919 CRCT1Q9UGL9 99 aa5.19□□□□□ -1.58
VRK3-205ENST00000593919 KMT2DO14686 5537 aa5.17□□□□□ -1.58
VRK3-205ENST00000593919 KRTAP4-8A0A0G2JLE6 195 aa5.09□□□□□ -1.6
VRK3-205ENST00000593919 KRTAP4-8Q9BYQ9 185 aa5.09□□□□□ -1.6
VRK3-205ENST00000593919 LCE5AQ5TCM9 118 aa5.08□□□□□ -1.6
VRK3-205ENST00000593919 KRTAP8-1Q8IUC2 63 aa5.04□□□□□ -1.6
VRK3-205ENST00000593919 INE1O15225 51 aa5.02□□□□□ -1.61
VRK3-205ENST00000593919 SPRR5A0A1B0GTR4 108 aa5.02□□□□□ -1.61
VRK3-205ENST00000593919 MACF1Q9UPN3 7388 aaKnown RBP4.98□□□□□ -1.61
VRK3-205ENST00000593919 KRTAP12-3P60328 96 aa4.96□□□□□ -1.62
VRK3-205ENST00000593919 KRTAP19-5Q3LI72 72 aa4.94□□□□□ -1.62
VRK3-205ENST00000593919 KRTAP9-4Q9BYQ2 154 aa4.94□□□□□ -1.62
VRK3-205ENST00000593919 KRTAP19-7Q3SYF9 63 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms