RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 LINC01558Q9Y6Z2 57 aa4.82□□□□□ -1.64
SS18-220ENST00000582092 A0A1B0GU69 56 aa4.8□□□□□ -1.64
SS18-220ENST00000582092 KRTAP3-1Q9BYR8 98 aa4.76□□□□□ -1.65
SS18-220ENST00000582092 A6NED7 52 aa4.75□□□□□ -1.65
SS18-220ENST00000582092 H1FX-AS1Q4G0G2 97 aa4.75□□□□□ -1.65
SS18-220ENST00000582092 BRK1Q8WUW1 75 aa4.75□□□□□ -1.65
SS18-220ENST00000582092 S4R3F8 94 aa4.75□□□□□ -1.65
SS18-220ENST00000582092 RNF213Q63HN8 5207 aa4.74□□□□□ -1.65
SS18-220ENST00000582092 Q5VV11 94 aa4.73□□□□□ -1.65
SS18-220ENST00000582092 LCE2AQ5TA79 106 aaPredicted RBP4.69□□□□□ -1.66
SS18-220ENST00000582092 LCA10Q71F78 164 aa4.67□□□□□ -1.66
SS18-220ENST00000582092 KRTAP4-1Q9BYQ7 146 aa4.67□□□□□ -1.66
SS18-220ENST00000582092 UQCR11O14957 56 aa4.66□□□□□ -1.66
SS18-220ENST00000582092 CSAG1Q6PB30 78 aa4.66□□□□□ -1.66
SS18-220ENST00000582092 PRO0628Q9UI54 55 aa4.66□□□□□ -1.66
SS18-220ENST00000582092 MUC17Q685J3 4493 aa4.65□□□□□ -1.67
SS18-220ENST00000582092 MUC2Q02817 5179 aa4.64□□□□□ -1.67
SS18-220ENST00000582092 CDC42SE1Q9NRR8 79 aa4.62□□□□□ -1.67
SS18-220ENST00000582092 MIR22HGQ0VDD5 57 aa4.61□□□□□ -1.67
SS18-220ENST00000582092 A0A1B0GU33 70 aa4.6□□□□□ -1.67
SS18-220ENST00000582092 KRTAP3-3Q9BYR6 98 aa4.58□□□□□ -1.68
SS18-220ENST00000582092 KRTAP9-2Q9BYQ4 174 aa4.57□□□□□ -1.68
SS18-220ENST00000582092 M0R2T5 61 aa4.56□□□□□ -1.68
SS18-220ENST00000582092 SPATA8Q6RVD6 105 aa4.56□□□□□ -1.68
SS18-220ENST00000582092 FAT4Q6V0I7 4981 aa4.56□□□□□ -1.68
SS18-220ENST00000582092 LCE2CQ5TA81 110 aa4.55□□□□□ -1.68
SS18-220ENST00000582092 MT1HP80294 61 aa4.54□□□□□ -1.68
SS18-220ENST00000582092 KRTAP19-2Q3LHN2 52 aa4.53□□□□□ -1.68
SS18-220ENST00000582092 ADM2Q7Z4H4 148 aa4.53□□□□□ -1.68
SS18-220ENST00000582092 PMAIP1Q13794 54 aa4.52□□□□□ -1.69
SS18-220ENST00000582092 K7ERS5 55 aa4.51□□□□□ -1.69
SS18-220ENST00000582092 A8MU10 97 aa4.48□□□□□ -1.69
SS18-220ENST00000582092 H0YAA0 97 aa4.48□□□□□ -1.69
SS18-220ENST00000582092 LCE2DQ5TA82 110 aaPredicted RBP4.48□□□□□ -1.69
SS18-220ENST00000582092 KRTAP10-6P60371 365 aaPredicted RBP4.46□□□□□ -1.7
SS18-220ENST00000582092 KRTAP3-2Q9BYR7 98 aa4.45□□□□□ -1.7
SS18-220ENST00000582092 M0QZ58 72 aa4.44□□□□□ -1.7
SS18-220ENST00000582092 P0C880 135 aa4.44□□□□□ -1.7
SS18-220ENST00000582092 LORP23490 312 aaPredicted RBP4.44□□□□□ -1.7
SS18-220ENST00000582092 KRTAP9-6A0A140TA67 174 aa4.42□□□□□ -1.7
SS18-220ENST00000582092 A0A0D9SG42 100 aa4.41□□□□□ -1.7
SS18-220ENST00000582092 R4GN34 69 aa4.41□□□□□ -1.7
SS18-220ENST00000582092 SVIPQ8NHG7 77 aa4.4□□□□□ -1.71
SS18-220ENST00000582092 A6NN06 94 aa4.36□□□□□ -1.71
SS18-220ENST00000582092 CRCT1Q9UGL9 99 aa4.35□□□□□ -1.71
SS18-220ENST00000582092 LINC01554Q52M75 96 aa4.34□□□□□ -1.71
SS18-220ENST00000582092 KRTAP13-4Q3LI77 160 aa4.33□□□□□ -1.72
SS18-220ENST00000582092 SPINT4Q6UDR6 99 aa4.33□□□□□ -1.72
SS18-220ENST00000582092 CRIPTQ9P021 101 aa4.32□□□□□ -1.72
SS18-220ENST00000582092 KTN1-AS1Q86SY8 53 aa4.3□□□□□ -1.72
SS18-220ENST00000582092 FLGP20930 4061 aaPredicted RBP4.3□□□□□ -1.72
SS18-220ENST00000582092 KRTAP9-8Q9BYQ0 159 aa4.28□□□□□ -1.72
SS18-220ENST00000582092 KRTAP10-10P60014 251 aa4.25□□□□□ -1.73
SS18-220ENST00000582092 MT2AP02795 61 aa4.23□□□□□ -1.73
SS18-220ENST00000582092 KRTAP12-1P59990 96 aa4.23□□□□□ -1.73
SS18-220ENST00000582092 ROMO1P60602 79 aa4.22□□□□□ -1.73
SS18-220ENST00000582092 KRTAP12-2P59991 146 aa4.21□□□□□ -1.74
SS18-220ENST00000582092 MT1FP04733 61 aa4.19□□□□□ -1.74
SS18-220ENST00000582092 CAMK2N1Q7Z7J9 78 aa4.18□□□□□ -1.74
SS18-220ENST00000582092 FSIP2Q5CZC0 6907 aa4.17□□□□□ -1.74
SS18-220ENST00000582092 PLAC4Q8WY50 150 aa4.16□□□□□ -1.74
SS18-220ENST00000582092 KRTAP9-3Q9BYQ3 159 aa4.15□□□□□ -1.75
SS18-220ENST00000582092 PRAC1Q96KF2 57 aa4.13□□□□□ -1.75
SS18-220ENST00000582092 LCE2BO14633 110 aa4.1□□□□□ -1.75
SS18-220ENST00000582092 SPRR2GQ9BYE4 73 aa4.09□□□□□ -1.75
SS18-220ENST00000582092 KRTAP25-1Q3LHN0 102 aa4.05□□□□□ -1.76
SS18-220ENST00000582092 KRTAP19-1Q8IUB9 90 aa4.05□□□□□ -1.76
SS18-220ENST00000582092 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.02□□□□□ -1.77
SS18-220ENST00000582092 KRTAP19-6Q3LI70 58 aa4□□□□□ -1.77
SS18-220ENST00000582092 KRTAP9-7A8MTY7 169 aa3.98□□□□□ -1.77
SS18-220ENST00000582092 C10orf95Q9H7T3 257 aa3.98□□□□□ -1.77
SS18-220ENST00000582092 TNP1P09430 55 aa3.97□□□□□ -1.77
SS18-220ENST00000582092 KRTAP19-8Q3LI54 63 aa3.96□□□□□ -1.78
SS18-220ENST00000582092 USH2AO75445 5202 aa3.92□□□□□ -1.78
SS18-220ENST00000582092 PP632Q6XCG6 107 aa3.9□□□□□ -1.79
SS18-220ENST00000582092 PRO2289Q9P1D8 64 aa3.9□□□□□ -1.79
SS18-220ENST00000582092 SSPOA2VEC9 5147 aa3.88□□□□□ -1.79
SS18-220ENST00000582092 MT1BP07438 61 aa3.87□□□□□ -1.79
SS18-220ENST00000582092 FCGBPQ9Y6R7 5405 aaPredicted RBP3.85□□□□□ -1.79
SS18-220ENST00000582092 KRTAP23-1A1A580 65 aa3.81□□□□□ -1.8
SS18-220ENST00000582092 KRTAP10-5P60370 271 aa3.8□□□□□ -1.8
SS18-220ENST00000582092 KRTAP6-3Q3LI67 103 aa3.8□□□□□ -1.8
SS18-220ENST00000582092 MT1XP80297 61 aa3.78□□□□□ -1.8
SS18-220ENST00000582092 MACF1Q9UPN3 7388 aaKnown RBP3.77□□□□□ -1.81
SS18-220ENST00000582092 KRTAP10-12P60413 245 aa3.7□□□□□ -1.82
SS18-220ENST00000582092 LCE3AQ5TA76 89 aa3.68□□□□□ -1.82
SS18-220ENST00000582092 SYNE2Q8WXH0 6885 aaKnown RBP3.66□□□□□ -1.82
SS18-220ENST00000582092 KRTAP10-7P60409 375 aaPredicted RBP3.64□□□□□ -1.83
SS18-220ENST00000582092 KRTAP5-9P26371 169 aa3.62□□□□□ -1.83
SS18-220ENST00000582092 KRTAP8-1Q8IUC2 63 aa3.58□□□□□ -1.84
SS18-220ENST00000582092 KRTAP12-3P60328 96 aa3.56□□□□□ -1.84
SS18-220ENST00000582092 KRTAP15-1Q3LI76 137 aa3.55□□□□□ -1.84
SS18-220ENST00000582092 SPRR2FQ96RM1 72 aa3.55□□□□□ -1.84
SS18-220ENST00000582092 KRTAP20-1Q3LI63 56 aa3.52□□□□□ -1.85
SS18-220ENST00000582092 LUZP6Q538Z0 58 aa3.51□□□□□ -1.85
SS18-220ENST00000582092 SPRR2EP22531 72 aa3.49□□□□□ -1.85
SS18-220ENST00000582092 SPRR2BP35325 72 aa3.49□□□□□ -1.85
SS18-220ENST00000582092 SPRR2AP35326 72 aa3.49□□□□□ -1.85
SS18-220ENST00000582092 KRTAP19-5Q3LI72 72 aa3.48□□□□□ -1.85
SS18-220ENST00000582092 KRTAP4-8A0A0G2JLE6 195 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms