RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 RPL37P61927 97 aaKnown RBP5.63□□□□□ -1.51
SS18-217ENST00000580958 LPAP08519 4548 aa5.62□□□□□ -1.51
SS18-217ENST00000580958 ATP5EP56381 51 aaPredicted RBP5.62□□□□□ -1.51
SS18-217ENST00000580958 TPRXLQ17RH7 258 aa5.62□□□□□ -1.51
SS18-217ENST00000580958 SPANXA2-OT1Q8N9U9 137 aa5.6□□□□□ -1.51
SS18-217ENST00000580958 C7orf65Q6ZTY9 151 aa5.59□□□□□ -1.51
SS18-217ENST00000580958 HRES1P13985 223 aa5.58□□□□□ -1.52
SS18-217ENST00000580958 LRP2P98164 4655 aa5.58□□□□□ -1.52
SS18-217ENST00000580958 ATP11AUNQ6ZP68 121 aa5.58□□□□□ -1.52
SS18-217ENST00000580958 MUC17Q685J3 4493 aa5.58□□□□□ -1.52
SS18-217ENST00000580958 KRTAP9-8Q9BYQ0 159 aa5.56□□□□□ -1.52
SS18-217ENST00000580958 SPINK7P58062 85 aa5.54□□□□□ -1.52
SS18-217ENST00000580958 SERP1Q9Y6X1 66 aa5.54□□□□□ -1.52
SS18-217ENST00000580958 HERC1Q15751 4861 aa5.53□□□□□ -1.52
SS18-217ENST00000580958 RPS28P62857 69 aaKnown RBP5.5□□□□□ -1.53
SS18-217ENST00000580958 HMCN2Q8NDA2 5059 aa5.48□□□□□ -1.53
SS18-217ENST00000580958 C4orf26Q17RF5 130 aa5.47□□□□□ -1.53
SS18-217ENST00000580958 DMAC1Q96GE9 116 aa5.47□□□□□ -1.53
SS18-217ENST00000580958 COA5Q86WW8 74 aa5.46□□□□□ -1.54
SS18-217ENST00000580958 ACYP2P14621 99 aa5.44□□□□□ -1.54
SS18-217ENST00000580958 SEC61BP60468 96 aaKnown RBP5.44□□□□□ -1.54
SS18-217ENST00000580958 COX6B2Q6YFQ2 88 aa5.4□□□□□ -1.54
SS18-217ENST00000580958 SMIM26A0A096LP01 95 aa5.39□□□□□ -1.55
SS18-217ENST00000580958 A8MUN3 132 aa5.39□□□□□ -1.55
SS18-217ENST00000580958 CHKB-CPT1BH3BT56 60 aa5.37□□□□□ -1.55
SS18-217ENST00000580958 KRTAP4-1Q9BYQ7 146 aa5.35□□□□□ -1.55
SS18-217ENST00000580958 MPLKIPQ8TAP9 179 aa5.33□□□□□ -1.56
SS18-217ENST00000580958 RBM12B-AS1Q9P1G2 102 aa5.31□□□□□ -1.56
SS18-217ENST00000580958 Q1T7F1 81 aa5.27□□□□□ -1.57
SS18-217ENST00000580958 H1FX-AS1Q4G0G2 97 aa5.27□□□□□ -1.57
SS18-217ENST00000580958 S4R3F8 94 aa5.25□□□□□ -1.57
SS18-217ENST00000580958 V9GYY9 64 aa5.25□□□□□ -1.57
SS18-217ENST00000580958 FLGP20930 4061 aaPredicted RBP5.24□□□□□ -1.57
SS18-217ENST00000580958 KRTAP23-1A1A580 65 aa5.24□□□□□ -1.57
SS18-217ENST00000580958 KRTAP15-1Q3LI76 137 aa5.24□□□□□ -1.57
SS18-217ENST00000580958 SPTSSBQ8NFR3 76 aa5.24□□□□□ -1.57
SS18-217ENST00000580958 LINC01558Q9Y6Z2 57 aa5.24□□□□□ -1.57
SS18-217ENST00000580958 RNF213Q63HN8 5207 aa5.23□□□□□ -1.57
SS18-217ENST00000580958 LCA10Q71F78 164 aa5.22□□□□□ -1.57
SS18-217ENST00000580958 PRR15LQ9BU68 103 aa5.21□□□□□ -1.58
SS18-217ENST00000580958 PSPHP1O15172 72 aa5.2□□□□□ -1.58
SS18-217ENST00000580958 KRTAP19-2Q3LHN2 52 aa5.19□□□□□ -1.58
SS18-217ENST00000580958 Q5VV11 94 aa5.16□□□□□ -1.58
SS18-217ENST00000580958 UBR4Q5T4S7 5183 aa5.14□□□□□ -1.59
SS18-217ENST00000580958 A0A1B0GU69 56 aa5.14□□□□□ -1.59
SS18-217ENST00000580958 MUC2Q02817 5179 aa5.13□□□□□ -1.59
SS18-217ENST00000580958 CSAG1Q6PB30 78 aa5.11□□□□□ -1.59
SS18-217ENST00000580958 SEC61GP60059 68 aa5.1□□□□□ -1.59
SS18-217ENST00000580958 FAT4Q6V0I7 4981 aa5.04□□□□□ -1.6
SS18-217ENST00000580958 A6NED7 52 aa5.04□□□□□ -1.6
SS18-217ENST00000580958 KRTAP10-6P60371 365 aaPredicted RBP5.02□□□□□ -1.61
SS18-217ENST00000580958 ADM2Q7Z4H4 148 aa5.02□□□□□ -1.61
SS18-217ENST00000580958 A0A1B0GU33 70 aa4.99□□□□□ -1.61
SS18-217ENST00000580958 P0C880 135 aa4.99□□□□□ -1.61
SS18-217ENST00000580958 BRK1Q8WUW1 75 aa4.99□□□□□ -1.61
SS18-217ENST00000580958 H0YAA0 97 aa4.97□□□□□ -1.61
SS18-217ENST00000580958 UQCR11O14957 56 aa4.97□□□□□ -1.61
SS18-217ENST00000580958 MT1HP80294 61 aa4.96□□□□□ -1.62
SS18-217ENST00000580958 A8MU10 97 aa4.95□□□□□ -1.62
SS18-217ENST00000580958 MIR22HGQ0VDD5 57 aa4.94□□□□□ -1.62
SS18-217ENST00000580958 CDC42SE1Q9NRR8 79 aa4.94□□□□□ -1.62
SS18-217ENST00000580958 SPATA8Q6RVD6 105 aa4.93□□□□□ -1.62
SS18-217ENST00000580958 M0R2T5 61 aa4.92□□□□□ -1.62
SS18-217ENST00000580958 KRTAP13-4Q3LI77 160 aa4.9□□□□□ -1.63
SS18-217ENST00000580958 PRO0628Q9UI54 55 aa4.86□□□□□ -1.63
SS18-217ENST00000580958 M0QZ58 72 aa4.83□□□□□ -1.64
SS18-217ENST00000580958 A0A0D9SG42 100 aa4.82□□□□□ -1.64
SS18-217ENST00000580958 R4GN34 69 aa4.81□□□□□ -1.64
SS18-217ENST00000580958 MT2AP02795 61 aa4.79□□□□□ -1.64
SS18-217ENST00000580958 MT1FP04733 61 aa4.75□□□□□ -1.65
SS18-217ENST00000580958 LINC01554Q52M75 96 aa4.75□□□□□ -1.65
SS18-217ENST00000580958 CRIPTQ9P021 101 aa4.75□□□□□ -1.65
SS18-217ENST00000580958 KRTAP10-10P60014 251 aa4.74□□□□□ -1.65
SS18-217ENST00000580958 A6NN06 94 aa4.7□□□□□ -1.66
SS18-217ENST00000580958 K7ERS5 55 aa4.7□□□□□ -1.66
SS18-217ENST00000580958 KRTAP12-1P59990 96 aa4.7□□□□□ -1.66
SS18-217ENST00000580958 PMAIP1Q13794 54 aa4.7□□□□□ -1.66
SS18-217ENST00000580958 KRTAP12-2P59991 146 aa4.69□□□□□ -1.66
SS18-217ENST00000580958 SPINT4Q6UDR6 99 aa4.69□□□□□ -1.66
SS18-217ENST00000580958 SPRR2GQ9BYE4 73 aa4.66□□□□□ -1.66
SS18-217ENST00000580958 SVIPQ8NHG7 77 aa4.6□□□□□ -1.67
SS18-217ENST00000580958 KRTAP19-8Q3LI54 63 aa4.55□□□□□ -1.68
SS18-217ENST00000580958 LCE1AQ5T7P2 110 aa4.55□□□□□ -1.68
SS18-217ENST00000580958 ROMO1P60602 79 aa4.53□□□□□ -1.68
SS18-217ENST00000580958 PLAC4Q8WY50 150 aa4.53□□□□□ -1.68
SS18-217ENST00000580958 CAMK2N1Q7Z7J9 78 aa4.52□□□□□ -1.69
SS18-217ENST00000580958 KTN1-AS1Q86SY8 53 aa4.52□□□□□ -1.69
SS18-217ENST00000580958 MT1BP07438 61 aa4.5□□□□□ -1.69
SS18-217ENST00000580958 C10orf95Q9H7T3 257 aa4.46□□□□□ -1.7
SS18-217ENST00000580958 PRAC1Q96KF2 57 aa4.45□□□□□ -1.7
SS18-217ENST00000580958 USH2AO75445 5202 aa4.43□□□□□ -1.7
SS18-217ENST00000580958 KRTAP10-7P60409 375 aaPredicted RBP4.39□□□□□ -1.71
SS18-217ENST00000580958 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.38□□□□□ -1.71
SS18-217ENST00000580958 MT1XP80297 61 aa4.35□□□□□ -1.71
SS18-217ENST00000580958 KRTAP10-5P60370 271 aa4.34□□□□□ -1.71
SS18-217ENST00000580958 KRTAP25-1Q3LHN0 102 aa4.32□□□□□ -1.72
SS18-217ENST00000580958 TNP1P09430 55 aa4.3□□□□□ -1.72
SS18-217ENST00000580958 KRTAP5-11Q6L8G4 156 aa4.3□□□□□ -1.72
SS18-217ENST00000580958 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
SS18-217ENST00000580958 SSPOA2VEC9 5147 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms