RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ATP5EP2Q5VTU8 51 aa7.81□□□□□ -1.16
CLK3-227ENST00000570296 TMEM254Q8TBM7 123 aa7.8□□□□□ -1.16
CLK3-227ENST00000570296 CASC2Q6XLA1 102 aa7.78□□□□□ -1.16
CLK3-227ENST00000570296 MRPL34Q9BQ48 92 aaKnown RBP7.78□□□□□ -1.16
CLK3-227ENST00000570296 C5orf47Q569G3 176 aa7.77□□□□□ -1.17
CLK3-227ENST00000570296 LINC00643Q86TS7 51 aa7.77□□□□□ -1.17
CLK3-227ENST00000570296 NDUFS5O43920 106 aa7.76□□□□□ -1.17
CLK3-227ENST00000570296 DSTQ03001 7570 aaKnown RBP7.76□□□□□ -1.17
CLK3-227ENST00000570296 HCG22E2RYF7 251 aa7.75□□□□□ -1.17
CLK3-227ENST00000570296 K7ERU9 68 aa7.75□□□□□ -1.17
CLK3-227ENST00000570296 HIST1H4AP62805 103 aaKnown RBP7.72□□□□□ -1.17
CLK3-227ENST00000570296 KLKP1Q107X0 134 aa7.71□□□□□ -1.18
CLK3-227ENST00000570296 PRO2289Q9P1D8 64 aa7.65□□□□□ -1.18
CLK3-227ENST00000570296 CSAG1Q6PB30 78 aa7.63□□□□□ -1.19
CLK3-227ENST00000570296 TP53AIP1Q9HCN2 124 aa7.61□□□□□ -1.19
CLK3-227ENST00000570296 KRTAP12-2P59991 146 aa7.59□□□□□ -1.19
CLK3-227ENST00000570296 IGKV2D-30A0A075B6S6 120 aa7.58□□□□□ -1.2
CLK3-227ENST00000570296 A0A087WVE0 104 aa7.58□□□□□ -1.2
CLK3-227ENST00000570296 IGKV2-30P06310 120 aa7.58□□□□□ -1.2
CLK3-227ENST00000570296 CRIPTQ9P021 101 aa7.58□□□□□ -1.2
CLK3-227ENST00000570296 C7orf65Q6ZTY9 151 aa7.57□□□□□ -1.2
CLK3-227ENST00000570296 KRTAP4-9Q9BYQ8 210 aa7.57□□□□□ -1.2
CLK3-227ENST00000570296 MT1XP80297 61 aa7.55□□□□□ -1.2
CLK3-227ENST00000570296 S4R3F8 94 aa7.55□□□□□ -1.2
CLK3-227ENST00000570296 C4orf26Q17RF5 130 aa7.54□□□□□ -1.2
CLK3-227ENST00000570296 Q5W150 140 aa7.54□□□□□ -1.2
CLK3-227ENST00000570296 MT-ATP8P03928 68 aa7.51□□□□□ -1.21
CLK3-227ENST00000570296 KRTAP4-8A0A0G2JLE6 195 aa7.5□□□□□ -1.21
CLK3-227ENST00000570296 SCGB1A1P11684 91 aa7.5□□□□□ -1.21
CLK3-227ENST00000570296 LCA10Q71F78 164 aa7.5□□□□□ -1.21
CLK3-227ENST00000570296 KRTAP4-8Q9BYQ9 185 aa7.5□□□□□ -1.21
CLK3-227ENST00000570296 UQCRQO14949 82 aa7.49□□□□□ -1.21
CLK3-227ENST00000570296 HMCN1Q96RW7 5635 aa7.48□□□□□ -1.21
CLK3-227ENST00000570296 TRAV22A0A0B4J277 110 aa7.47□□□□□ -1.21
CLK3-227ENST00000570296 AHNAK2Q8IVF2 5795 aa7.43□□□□□ -1.22
CLK3-227ENST00000570296 ATOX1O00244 68 aa7.43□□□□□ -1.22
CLK3-227ENST00000570296 KRTAP3-1Q9BYR8 98 aa7.42□□□□□ -1.22
CLK3-227ENST00000570296 H0Y9P7 68 aa7.41□□□□□ -1.22
CLK3-227ENST00000570296 LOC101927531A0A1B0GV80 90 aa7.4□□□□□ -1.22
CLK3-227ENST00000570296 MP68P56378 58 aa7.39□□□□□ -1.23
CLK3-227ENST00000570296 OCR1Q9BZK8 76 aa7.39□□□□□ -1.23
CLK3-227ENST00000570296 SMIM20Q8N5G0 67 aa7.37□□□□□ -1.23
CLK3-227ENST00000570296 C1orf64Q8NEQ6 169 aa7.34□□□□□ -1.23
CLK3-227ENST00000570296 CYP4F30PQ9H0H9 118 aa7.34□□□□□ -1.23
CLK3-227ENST00000570296 LINC00208Q96KT6 92 aa7.33□□□□□ -1.24
CLK3-227ENST00000570296 H3BPC8 53 aa7.31□□□□□ -1.24
CLK3-227ENST00000570296 LCE1DQ5T752 114 aa7.31□□□□□ -1.24
CLK3-227ENST00000570296 TRAV7A0A075B6U4 112 aa7.29□□□□□ -1.24
CLK3-227ENST00000570296 PLAC4Q8WY50 150 aa7.29□□□□□ -1.24
CLK3-227ENST00000570296 KRTAP5-10Q6L8G5 202 aa7.28□□□□□ -1.24
CLK3-227ENST00000570296 KRTAP3-3Q9BYR6 98 aa7.28□□□□□ -1.24
CLK3-227ENST00000570296 A8MUN3 132 aa7.22□□□□□ -1.25
CLK3-227ENST00000570296 SERP2Q8N6R1 65 aa7.19□□□□□ -1.26
CLK3-227ENST00000570296 KRTAP10-7P60409 375 aaPredicted RBP7.17□□□□□ -1.26
CLK3-227ENST00000570296 KRTAP10-12P60413 245 aa7.17□□□□□ -1.26
CLK3-227ENST00000570296 KRTAP5-7Q6L8G8 165 aa7.14□□□□□ -1.27
CLK3-227ENST00000570296 H0YAA0 97 aa7.12□□□□□ -1.27
CLK3-227ENST00000570296 C20orf197Q8N268 126 aa7.11□□□□□ -1.27
CLK3-227ENST00000570296 SNURFQ9Y675 71 aa7.09□□□□□ -1.27
CLK3-227ENST00000570296 MT4P47944 62 aa7.08□□□□□ -1.28
CLK3-227ENST00000570296 COX7CP15954 63 aa7.07□□□□□ -1.28
CLK3-227ENST00000570296 LCE4AQ5TA78 99 aa7.06□□□□□ -1.28
CLK3-227ENST00000570296 LCE5AQ5TCM9 118 aa7.05□□□□□ -1.28
CLK3-227ENST00000570296 ANAPC13Q9BS18 74 aa7.05□□□□□ -1.28
CLK3-227ENST00000570296 DMAC1Q96GE9 116 aa7.01□□□□□ -1.29
CLK3-227ENST00000570296 NDUFC1O43677 76 aa6.99□□□□□ -1.29
CLK3-227ENST00000570296 ACYP2P14621 99 aa6.97□□□□□ -1.29
CLK3-227ENST00000570296 ADM2Q7Z4H4 148 aa6.97□□□□□ -1.29
CLK3-227ENST00000570296 SPANXA2-OT1Q8N9U9 137 aa6.96□□□□□ -1.3
CLK3-227ENST00000570296 KRTAP19-3Q7Z4W3 81 aa6.9□□□□□ -1.3
CLK3-227ENST00000570296 R4GN34 69 aa6.9□□□□□ -1.3
CLK3-227ENST00000570296 SPRR5A0A1B0GTR4 108 aa6.89□□□□□ -1.31
CLK3-227ENST00000570296 CHKB-CPT1BH3BT56 60 aa6.88□□□□□ -1.31
CLK3-227ENST00000570296 KRTAP5-3Q6L8H2 238 aa6.88□□□□□ -1.31
CLK3-227ENST00000570296 SPTSSBQ8NFR3 76 aa6.86□□□□□ -1.31
CLK3-227ENST00000570296 H7BZZ5 65 aa6.85□□□□□ -1.31
CLK3-227ENST00000570296 CCDC179H3BU77 68 aa6.84□□□□□ -1.31
CLK3-227ENST00000570296 CYSTM1Q9H1C7 97 aa6.83□□□□□ -1.32
CLK3-227ENST00000570296 PCP4P48539 62 aa6.81□□□□□ -1.32
CLK3-227ENST00000570296 M0QZ58 72 aa6.78□□□□□ -1.32
CLK3-227ENST00000570296 KRTAP4-6Q9BYQ5 205 aa6.78□□□□□ -1.32
CLK3-227ENST00000570296 KRTAP5-4Q6L8H1 288 aa6.77□□□□□ -1.33
CLK3-227ENST00000570296 MT1EP04732 61 aa6.76□□□□□ -1.33
CLK3-227ENST00000570296 KRTAP19-7Q3SYF9 63 aa6.76□□□□□ -1.33
CLK3-227ENST00000570296 COA5Q86WW8 74 aa6.74□□□□□ -1.33
CLK3-227ENST00000570296 LINC01554Q52M75 96 aa6.72□□□□□ -1.33
CLK3-227ENST00000570296 ATP5EP56381 51 aaPredicted RBP6.71□□□□□ -1.34
CLK3-227ENST00000570296 P0C880 135 aa6.68□□□□□ -1.34
CLK3-227ENST00000570296 TMEM258P61165 79 aa6.65□□□□□ -1.34
CLK3-227ENST00000570296 MT1GP13640 62 aa6.64□□□□□ -1.35
CLK3-227ENST00000570296 PP632Q6XCG6 107 aa6.6□□□□□ -1.35
CLK3-227ENST00000570296 SEC61GP60059 68 aa6.58□□□□□ -1.36
CLK3-227ENST00000570296 KRTAP3-2Q9BYR7 98 aa6.55□□□□□ -1.36
CLK3-227ENST00000570296 SERP1Q9Y6X1 66 aa6.54□□□□□ -1.36
CLK3-227ENST00000570296 AHNAKQ09666 5890 aaKnown RBP6.53□□□□□ -1.36
CLK3-227ENST00000570296 MT1MQ8N339 61 aa6.5□□□□□ -1.37
CLK3-227ENST00000570296 A0A1B0GU69 56 aa6.43□□□□□ -1.38
CLK3-227ENST00000570296 KRTAP20-2Q3LI61 65 aa6.43□□□□□ -1.38
CLK3-227ENST00000570296 PRR15LQ9BU68 103 aa6.39□□□□□ -1.39
CLK3-227ENST00000570296 A0A1B0GU33 70 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms