RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 LCA10Q71F78 164 aa5.31□□□□□ -1.56
CLN3-224ENST00000566816 ANAPC13Q9BS18 74 aa5.31□□□□□ -1.56
CLN3-224ENST00000566816 KRTAP3-3Q9BYR6 98 aa5.29□□□□□ -1.56
CLN3-224ENST00000566816 ACYP2P14621 99 aa5.28□□□□□ -1.56
CLN3-224ENST00000566816 LCE2DQ5TA82 110 aaPredicted RBP5.26□□□□□ -1.57
CLN3-224ENST00000566816 MT2AP02795 61 aa5.25□□□□□ -1.57
CLN3-224ENST00000566816 KRTAP9-6A0A140TA67 174 aa5.22□□□□□ -1.57
CLN3-224ENST00000566816 H7BZZ5 65 aa5.22□□□□□ -1.57
CLN3-224ENST00000566816 H0YAA0 97 aa5.2□□□□□ -1.58
CLN3-224ENST00000566816 MT1FP04733 61 aa5.2□□□□□ -1.58
CLN3-224ENST00000566816 KRTAP10-10P60014 251 aa5.2□□□□□ -1.58
CLN3-224ENST00000566816 KRTAP9-2Q9BYQ4 174 aa5.2□□□□□ -1.58
CLN3-224ENST00000566816 CCDC179H3BU77 68 aa5.17□□□□□ -1.58
CLN3-224ENST00000566816 SPTSSBQ8NFR3 76 aa5.17□□□□□ -1.58
CLN3-224ENST00000566816 CYSTM1Q9H1C7 97 aa5.17□□□□□ -1.58
CLN3-224ENST00000566816 KRTAP9-3Q9BYQ3 159 aa5.16□□□□□ -1.58
CLN3-224ENST00000566816 CHKB-CPT1BH3BT56 60 aa5.13□□□□□ -1.59
CLN3-224ENST00000566816 CRIPTQ9P021 101 aa5.11□□□□□ -1.59
CLN3-224ENST00000566816 ATP5EP56381 51 aaPredicted RBP5.1□□□□□ -1.59
CLN3-224ENST00000566816 COA5Q86WW8 74 aa5.08□□□□□ -1.6
CLN3-224ENST00000566816 ADM2Q7Z4H4 148 aa5.06□□□□□ -1.6
CLN3-224ENST00000566816 TMEM258P61165 79 aa5.05□□□□□ -1.6
CLN3-224ENST00000566816 SPRR2GQ9BYE4 73 aa5.05□□□□□ -1.6
CLN3-224ENST00000566816 LCE2BO14633 110 aa5.03□□□□□ -1.6
CLN3-224ENST00000566816 KRTAP19-1Q8IUB9 90 aa5.02□□□□□ -1.61
CLN3-224ENST00000566816 KRTAP3-2Q9BYR7 98 aa5.02□□□□□ -1.61
CLN3-224ENST00000566816 USH2AO75445 5202 aa5.01□□□□□ -1.61
CLN3-224ENST00000566816 P0C880 135 aa4.98□□□□□ -1.61
CLN3-224ENST00000566816 KRTAP19-8Q3LI54 63 aa4.96□□□□□ -1.62
CLN3-224ENST00000566816 CRCT1Q9UGL9 99 aa4.95□□□□□ -1.62
CLN3-224ENST00000566816 PCP4P48539 62 aa4.94□□□□□ -1.62
CLN3-224ENST00000566816 SEC61GP60059 68 aa4.93□□□□□ -1.62
CLN3-224ENST00000566816 R4GN34 69 aa4.93□□□□□ -1.62
CLN3-224ENST00000566816 M0QZ58 72 aa4.92□□□□□ -1.62
CLN3-224ENST00000566816 FSIP2Q5CZC0 6907 aa4.92□□□□□ -1.62
CLN3-224ENST00000566816 SERP1Q9Y6X1 66 aa4.91□□□□□ -1.62
CLN3-224ENST00000566816 Q5VV11 94 aa4.9□□□□□ -1.63
CLN3-224ENST00000566816 SSPOA2VEC9 5147 aa4.9□□□□□ -1.63
CLN3-224ENST00000566816 MT1BP07438 61 aa4.87□□□□□ -1.63
CLN3-224ENST00000566816 KRTAP19-6Q3LI70 58 aa4.86□□□□□ -1.63
CLN3-224ENST00000566816 A0A1B0GU69 56 aa4.83□□□□□ -1.64
CLN3-224ENST00000566816 LINC01558Q9Y6Z2 57 aa4.83□□□□□ -1.64
CLN3-224ENST00000566816 A0A1B0GU33 70 aa4.81□□□□□ -1.64
CLN3-224ENST00000566816 PRR15LQ9BU68 103 aa4.81□□□□□ -1.64
CLN3-224ENST00000566816 A6NN06 94 aa4.8□□□□□ -1.64
CLN3-224ENST00000566816 RPS28P62857 69 aaKnown RBP4.8□□□□□ -1.64
CLN3-224ENST00000566816 PLAC4Q8WY50 150 aa4.78□□□□□ -1.64
CLN3-224ENST00000566816 V9GYY9 64 aa4.77□□□□□ -1.65
CLN3-224ENST00000566816 KRTAP13-4Q3LI77 160 aa4.76□□□□□ -1.65
CLN3-224ENST00000566816 FCGBPQ9Y6R7 5405 aaPredicted RBP4.76□□□□□ -1.65
CLN3-224ENST00000566816 LINC01554Q52M75 96 aa4.75□□□□□ -1.65
CLN3-224ENST00000566816 SMIM26A0A096LP01 95 aa4.74□□□□□ -1.65
CLN3-224ENST00000566816 KRTAP10-5P60370 271 aa4.73□□□□□ -1.65
CLN3-224ENST00000566816 Q1T7F1 81 aa4.73□□□□□ -1.65
CLN3-224ENST00000566816 H3BS24 57 aa4.72□□□□□ -1.65
CLN3-224ENST00000566816 PRO2289Q9P1D8 64 aa4.69□□□□□ -1.66
CLN3-224ENST00000566816 SPATA8Q6RVD6 105 aa4.68□□□□□ -1.66
CLN3-224ENST00000566816 UQCR11O14957 56 aa4.66□□□□□ -1.66
CLN3-224ENST00000566816 MT1XP80297 61 aa4.64□□□□□ -1.67
CLN3-224ENST00000566816 KRTAP9-7A8MTY7 169 aa4.63□□□□□ -1.67
CLN3-224ENST00000566816 A0A0D9SG42 100 aa4.61□□□□□ -1.67
CLN3-224ENST00000566816 KRTAP12-1P59990 96 aa4.59□□□□□ -1.67
CLN3-224ENST00000566816 PSPHP1O15172 72 aa4.58□□□□□ -1.68
CLN3-224ENST00000566816 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.57□□□□□ -1.68
CLN3-224ENST00000566816 A8MU10 97 aa4.56□□□□□ -1.68
CLN3-224ENST00000566816 CAMK2N1Q7Z7J9 78 aa4.56□□□□□ -1.68
CLN3-224ENST00000566816 MIR22HGQ0VDD5 57 aa4.55□□□□□ -1.68
CLN3-224ENST00000566816 SPINT4Q6UDR6 99 aa4.55□□□□□ -1.68
CLN3-224ENST00000566816 KRTAP12-2P59991 146 aa4.54□□□□□ -1.68
CLN3-224ENST00000566816 MACF1Q9UPN3 7388 aaKnown RBP4.51□□□□□ -1.69
CLN3-224ENST00000566816 A6NED7 52 aa4.47□□□□□ -1.69
CLN3-224ENST00000566816 KRTAP10-12P60413 245 aa4.45□□□□□ -1.7
CLN3-224ENST00000566816 K7ERS5 55 aa4.44□□□□□ -1.7
CLN3-224ENST00000566816 KRTAP6-3Q3LI67 103 aa4.43□□□□□ -1.7
CLN3-224ENST00000566816 KRTAP10-7P60409 375 aaPredicted RBP4.41□□□□□ -1.7
CLN3-224ENST00000566816 SYNE2Q8WXH0 6885 aaKnown RBP4.39□□□□□ -1.71
CLN3-224ENST00000566816 CDC42SE1Q9NRR8 79 aa4.38□□□□□ -1.71
CLN3-224ENST00000566816 C10orf95Q9H7T3 257 aa4.36□□□□□ -1.71
CLN3-224ENST00000566816 KMT2DO14686 5537 aa4.35□□□□□ -1.71
CLN3-224ENST00000566816 A0A0A0MQY5 61 aa4.35□□□□□ -1.71
CLN3-224ENST00000566816 KRTAP5-9P26371 169 aa4.35□□□□□ -1.71
CLN3-224ENST00000566816 TNP1P09430 55 aa4.32□□□□□ -1.72
CLN3-224ENST00000566816 KRTAP8-1Q8IUC2 63 aa4.32□□□□□ -1.72
CLN3-224ENST00000566816 KRTAP4-8A0A0G2JLE6 195 aa4.31□□□□□ -1.72
CLN3-224ENST00000566816 KRTAP4-8Q9BYQ9 185 aa4.31□□□□□ -1.72
CLN3-224ENST00000566816 KRTAP25-1Q3LHN0 102 aa4.25□□□□□ -1.73
CLN3-224ENST00000566816 MUC12Q9UKN1 5478 aa4.24□□□□□ -1.73
CLN3-224ENST00000566816 SPRR2FQ96RM1 72 aa4.22□□□□□ -1.73
CLN3-224ENST00000566816 MDN1Q9NU22 5596 aa4.19□□□□□ -1.74
CLN3-224ENST00000566816 KRTAP23-1A1A580 65 aa4.18□□□□□ -1.74
CLN3-224ENST00000566816 ROMO1P60602 79 aa4.18□□□□□ -1.74
CLN3-224ENST00000566816 KRTAP19-7Q3SYF9 63 aa4.15□□□□□ -1.75
CLN3-224ENST00000566816 BRK1Q8WUW1 75 aa4.15□□□□□ -1.75
CLN3-224ENST00000566816 LCE3AQ5TA76 89 aa4.14□□□□□ -1.75
CLN3-224ENST00000566816 NEBP20929 6669 aa4.13□□□□□ -1.75
CLN3-224ENST00000566816 LCE1AQ5T7P2 110 aa4.11□□□□□ -1.75
CLN3-224ENST00000566816 MT1EP04732 61 aa4.1□□□□□ -1.75
CLN3-224ENST00000566816 KRTAP19-5Q3LI72 72 aa4.1□□□□□ -1.75
CLN3-224ENST00000566816 SPRR2EP22531 72 aa4.08□□□□□ -1.76
CLN3-224ENST00000566816 SPRR2BP35325 72 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms