RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 SMIM20Q8N5G0 67 aa7.82□□□□□ -1.16
CLK3-207ENST00000562389 KRTAP3-3Q9BYR6 98 aa7.81□□□□□ -1.16
CLK3-207ENST00000562389 LCE2BO14633 110 aa7.8□□□□□ -1.16
CLK3-207ENST00000562389 TRAV7A0A075B6U4 112 aa7.78□□□□□ -1.16
CLK3-207ENST00000562389 NDUFC1O43677 76 aa7.7□□□□□ -1.18
CLK3-207ENST00000562389 USH2AO75445 5202 aa7.7□□□□□ -1.18
CLK3-207ENST00000562389 DMAC1Q96GE9 116 aa7.68□□□□□ -1.18
CLK3-207ENST00000562389 SERP2Q8N6R1 65 aa7.61□□□□□ -1.19
CLK3-207ENST00000562389 SSPOA2VEC9 5147 aa7.6□□□□□ -1.19
CLK3-207ENST00000562389 H0YAA0 97 aa7.6□□□□□ -1.19
CLK3-207ENST00000562389 KRTAP19-1Q8IUB9 90 aa7.6□□□□□ -1.19
CLK3-207ENST00000562389 SNURFQ9Y675 71 aa7.58□□□□□ -1.2
CLK3-207ENST00000562389 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.56□□□□□ -1.2
CLK3-207ENST00000562389 SPRR2GQ9BYE4 73 aa7.55□□□□□ -1.2
CLK3-207ENST00000562389 C20orf197Q8N268 126 aa7.54□□□□□ -1.2
CLK3-207ENST00000562389 KRTAP9-7A8MTY7 169 aa7.53□□□□□ -1.2
CLK3-207ENST00000562389 ACYP2P14621 99 aa7.53□□□□□ -1.2
CLK3-207ENST00000562389 CRIPTQ9P021 101 aa7.53□□□□□ -1.2
CLK3-207ENST00000562389 KRTAP19-6Q3LI70 58 aa7.5□□□□□ -1.21
CLK3-207ENST00000562389 ADM2Q7Z4H4 148 aa7.49□□□□□ -1.21
CLK3-207ENST00000562389 SPANXA2-OT1Q8N9U9 137 aa7.48□□□□□ -1.21
CLK3-207ENST00000562389 FCGBPQ9Y6R7 5405 aaPredicted RBP7.46□□□□□ -1.21
CLK3-207ENST00000562389 KRTAP19-8Q3LI54 63 aa7.46□□□□□ -1.22
CLK3-207ENST00000562389 COX7CP15954 63 aa7.45□□□□□ -1.22
CLK3-207ENST00000562389 Q5VV11 94 aa7.43□□□□□ -1.22
CLK3-207ENST00000562389 MT1BP07438 61 aa7.42□□□□□ -1.22
CLK3-207ENST00000562389 SPTSSBQ8NFR3 76 aa7.39□□□□□ -1.23
CLK3-207ENST00000562389 CHKB-CPT1BH3BT56 60 aa7.38□□□□□ -1.23
CLK3-207ENST00000562389 PCP4P48539 62 aa7.37□□□□□ -1.23
CLK3-207ENST00000562389 P0C880 135 aa7.35□□□□□ -1.23
CLK3-207ENST00000562389 ANAPC13Q9BS18 74 aa7.35□□□□□ -1.23
CLK3-207ENST00000562389 KRTAP3-2Q9BYR7 98 aa7.34□□□□□ -1.23
CLK3-207ENST00000562389 MACF1Q9UPN3 7388 aaKnown RBP7.34□□□□□ -1.23
CLK3-207ENST00000562389 R4GN34 69 aa7.29□□□□□ -1.24
CLK3-207ENST00000562389 H7BZZ5 65 aa7.28□□□□□ -1.24
CLK3-207ENST00000562389 CYSTM1Q9H1C7 97 aa7.28□□□□□ -1.24
CLK3-207ENST00000562389 M0QZ58 72 aa7.24□□□□□ -1.25
CLK3-207ENST00000562389 COA5Q86WW8 74 aa7.24□□□□□ -1.25
CLK3-207ENST00000562389 A6NN06 94 aa7.23□□□□□ -1.25
CLK3-207ENST00000562389 SYNE2Q8WXH0 6885 aaKnown RBP7.23□□□□□ -1.25
CLK3-207ENST00000562389 KRTAP10-5P60370 271 aa7.21□□□□□ -1.26
CLK3-207ENST00000562389 CCDC179H3BU77 68 aa7.15□□□□□ -1.26
CLK3-207ENST00000562389 PLAC4Q8WY50 150 aa7.12□□□□□ -1.27
CLK3-207ENST00000562389 LINC01554Q52M75 96 aa7.09□□□□□ -1.27
CLK3-207ENST00000562389 PRO2289Q9P1D8 64 aa7.04□□□□□ -1.28
CLK3-207ENST00000562389 ATP5EP56381 51 aaPredicted RBP7.02□□□□□ -1.29
CLK3-207ENST00000562389 MT1XP80297 61 aa7.02□□□□□ -1.29
CLK3-207ENST00000562389 SEC61GP60059 68 aa7.01□□□□□ -1.29
CLK3-207ENST00000562389 SERP1Q9Y6X1 66 aa7□□□□□ -1.29
CLK3-207ENST00000562389 KRTAP6-3Q3LI67 103 aa6.99□□□□□ -1.29
CLK3-207ENST00000562389 TMEM258P61165 79 aa6.98□□□□□ -1.29
CLK3-207ENST00000562389 KRTAP13-4Q3LI77 160 aa6.98□□□□□ -1.29
CLK3-207ENST00000562389 A0A1B0GU33 70 aa6.87□□□□□ -1.31
CLK3-207ENST00000562389 A0A1B0GU69 56 aa6.86□□□□□ -1.31
CLK3-207ENST00000562389 NEBP20929 6669 aa6.83□□□□□ -1.32
CLK3-207ENST00000562389 KRTAP12-2P59991 146 aa6.82□□□□□ -1.32
CLK3-207ENST00000562389 RPS28P62857 69 aaKnown RBP6.81□□□□□ -1.32
CLK3-207ENST00000562389 SPATA8Q6RVD6 105 aa6.81□□□□□ -1.32
CLK3-207ENST00000562389 MUC12Q9UKN1 5478 aa6.79□□□□□ -1.32
CLK3-207ENST00000562389 A0A0D9SG42 100 aa6.77□□□□□ -1.33
CLK3-207ENST00000562389 KRTAP5-9P26371 169 aa6.76□□□□□ -1.33
CLK3-207ENST00000562389 PRR15LQ9BU68 103 aa6.74□□□□□ -1.33
CLK3-207ENST00000562389 LINC01558Q9Y6Z2 57 aa6.74□□□□□ -1.33
CLK3-207ENST00000562389 CAMK2N1Q7Z7J9 78 aa6.72□□□□□ -1.33
CLK3-207ENST00000562389 KRTAP10-7P60409 375 aaPredicted RBP6.7□□□□□ -1.34
CLK3-207ENST00000562389 SMIM26A0A096LP01 95 aa6.69□□□□□ -1.34
CLK3-207ENST00000562389 KRTAP10-12P60413 245 aa6.68□□□□□ -1.34
CLK3-207ENST00000562389 KMT2DO14686 5537 aa6.67□□□□□ -1.34
CLK3-207ENST00000562389 KRTAP12-1P59990 96 aa6.67□□□□□ -1.34
CLK3-207ENST00000562389 SPINT4Q6UDR6 99 aa6.66□□□□□ -1.34
CLK3-207ENST00000562389 KRTAP8-1Q8IUC2 63 aa6.65□□□□□ -1.34
CLK3-207ENST00000562389 KRTAP4-8A0A0G2JLE6 195 aa6.61□□□□□ -1.35
CLK3-207ENST00000562389 A8MU10 97 aa6.61□□□□□ -1.35
CLK3-207ENST00000562389 KRTAP4-8Q9BYQ9 185 aa6.61□□□□□ -1.35
CLK3-207ENST00000562389 SPRR2FQ96RM1 72 aa6.58□□□□□ -1.36
CLK3-207ENST00000562389 KRTAP20-1Q3LI63 56 aa6.56□□□□□ -1.36
CLK3-207ENST00000562389 MDN1Q9NU22 5596 aa6.56□□□□□ -1.36
CLK3-207ENST00000562389 UQCR11O14957 56 aa6.52□□□□□ -1.37
CLK3-207ENST00000562389 V9GYY9 64 aa6.51□□□□□ -1.37
CLK3-207ENST00000562389 Q1T7F1 81 aa6.47□□□□□ -1.37
CLK3-207ENST00000562389 SPRR2EP22531 72 aa6.43□□□□□ -1.38
CLK3-207ENST00000562389 SPRR2BP35325 72 aa6.43□□□□□ -1.38
CLK3-207ENST00000562389 SPRR2AP35326 72 aa6.43□□□□□ -1.38
CLK3-207ENST00000562389 PSPHP1O15172 72 aa6.39□□□□□ -1.39
CLK3-207ENST00000562389 MIR22HGQ0VDD5 57 aa6.39□□□□□ -1.39
CLK3-207ENST00000562389 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
CLK3-207ENST00000562389 KRTAP2-3P0C7H8 128 aa6.35□□□□□ -1.39
CLK3-207ENST00000562389 KRTAP2-4Q9BYR9 128 aa6.35□□□□□ -1.39
CLK3-207ENST00000562389 C10orf95Q9H7T3 257 aa6.35□□□□□ -1.39
CLK3-207ENST00000562389 TNP1P09430 55 aa6.28□□□□□ -1.4
CLK3-207ENST00000562389 KRTAP19-7Q3SYF9 63 aa6.27□□□□□ -1.41
CLK3-207ENST00000562389 K7ERS5 55 aa6.22□□□□□ -1.41
CLK3-207ENST00000562389 MT1EP04732 61 aa6.21□□□□□ -1.42
CLK3-207ENST00000562389 SPRR2DP22532 72 aa6.21□□□□□ -1.42
CLK3-207ENST00000562389 A6NED7 52 aa6.2□□□□□ -1.42
CLK3-207ENST00000562389 KRTAP19-5Q3LI72 72 aa6.17□□□□□ -1.42
CLK3-207ENST00000562389 LCE3AQ5TA76 89 aa6.16□□□□□ -1.42
CLK3-207ENST00000562389 KRTAP2-2Q9BYT5 123 aa6.14□□□□□ -1.43
CLK3-207ENST00000562389 KRTAP2-1Q9BYU5 128 aa6.14□□□□□ -1.43
CLK3-207ENST00000562389 KRTAP19-3Q7Z4W3 81 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms