RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 COA5Q86WW8 74 aa5.2□□□□□ -1.58
USP3-219ENST00000561326 SPTSSBQ8NFR3 76 aa5.18□□□□□ -1.58
USP3-219ENST00000561326 S4R3F8 94 aa5.14□□□□□ -1.59
USP3-219ENST00000561326 SMIM26A0A096LP01 95 aa5.11□□□□□ -1.59
USP3-219ENST00000561326 LCA10Q71F78 164 aa5.09□□□□□ -1.59
USP3-219ENST00000561326 KRTAP19-2Q3LHN2 52 aa5.08□□□□□ -1.6
USP3-219ENST00000561326 CSAG1Q6PB30 78 aa5.07□□□□□ -1.6
USP3-219ENST00000561326 V9GYY9 64 aa5.06□□□□□ -1.6
USP3-219ENST00000561326 RNF213Q63HN8 5207 aa5.06□□□□□ -1.6
USP3-219ENST00000561326 FLGP20930 4061 aaPredicted RBP5.02□□□□□ -1.61
USP3-219ENST00000561326 MUC2Q02817 5179 aa5.02□□□□□ -1.61
USP3-219ENST00000561326 SEC61GP60059 68 aa5.02□□□□□ -1.61
USP3-219ENST00000561326 Q1T7F1 81 aa5.01□□□□□ -1.61
USP3-219ENST00000561326 LCE2CQ5TA81 110 aa5.01□□□□□ -1.61
USP3-219ENST00000561326 LINC01558Q9Y6Z2 57 aa5□□□□□ -1.61
USP3-219ENST00000561326 PRR15LQ9BU68 103 aa4.99□□□□□ -1.61
USP3-219ENST00000561326 A0A1B0GU69 56 aa4.97□□□□□ -1.61
USP3-219ENST00000561326 M0R2T5 61 aa4.97□□□□□ -1.61
USP3-219ENST00000561326 MT1HP80294 61 aa4.93□□□□□ -1.62
USP3-219ENST00000561326 H0YAA0 97 aa4.92□□□□□ -1.62
USP3-219ENST00000561326 PSPHP1O15172 72 aa4.9□□□□□ -1.63
USP3-219ENST00000561326 LCE2AQ5TA79 106 aaPredicted RBP4.9□□□□□ -1.63
USP3-219ENST00000561326 ADM2Q7Z4H4 148 aa4.89□□□□□ -1.63
USP3-219ENST00000561326 FAT4Q6V0I7 4981 aa4.85□□□□□ -1.63
USP3-219ENST00000561326 A0A1B0GU33 70 aa4.84□□□□□ -1.63
USP3-219ENST00000561326 Q5VV11 94 aa4.84□□□□□ -1.63
USP3-219ENST00000561326 KRTAP10-6P60371 365 aaPredicted RBP4.83□□□□□ -1.64
USP3-219ENST00000561326 UQCR11O14957 56 aa4.82□□□□□ -1.64
USP3-219ENST00000561326 P0C880 135 aa4.82□□□□□ -1.64
USP3-219ENST00000561326 KRTAP9-2Q9BYQ4 174 aa4.82□□□□□ -1.64
USP3-219ENST00000561326 A6NED7 52 aa4.8□□□□□ -1.64
USP3-219ENST00000561326 KRTAP9-6A0A140TA67 174 aa4.78□□□□□ -1.64
USP3-219ENST00000561326 M0QZ58 72 aa4.77□□□□□ -1.65
USP3-219ENST00000561326 CRIPTQ9P021 101 aa4.77□□□□□ -1.65
USP3-219ENST00000561326 LOC100996750A0A140TA64 210 aa4.76□□□□□ -1.65
USP3-219ENST00000561326 KRTAP4-6Q9BYQ5 205 aa4.76□□□□□ -1.65
USP3-219ENST00000561326 KRTAP10-10P60014 251 aa4.75□□□□□ -1.65
USP3-219ENST00000561326 R4GN34 69 aa4.75□□□□□ -1.65
USP3-219ENST00000561326 MIR22HGQ0VDD5 57 aa4.74□□□□□ -1.65
USP3-219ENST00000561326 KRTAP9-8Q9BYQ0 159 aa4.74□□□□□ -1.65
USP3-219ENST00000561326 LORP23490 312 aaPredicted RBP4.73□□□□□ -1.65
USP3-219ENST00000561326 MT2AP02795 61 aa4.72□□□□□ -1.65
USP3-219ENST00000561326 SPATA8Q6RVD6 105 aa4.71□□□□□ -1.66
USP3-219ENST00000561326 CDC42SE1Q9NRR8 79 aa4.68□□□□□ -1.66
USP3-219ENST00000561326 MT1FP04733 61 aa4.67□□□□□ -1.66
USP3-219ENST00000561326 BRK1Q8WUW1 75 aa4.67□□□□□ -1.66
USP3-219ENST00000561326 KRTAP13-4Q3LI77 160 aa4.66□□□□□ -1.66
USP3-219ENST00000561326 LINC01554Q52M75 96 aa4.64□□□□□ -1.67
USP3-219ENST00000561326 A0A0D9SG42 100 aa4.63□□□□□ -1.67
USP3-219ENST00000561326 SPRR2GQ9BYE4 73 aa4.62□□□□□ -1.67
USP3-219ENST00000561326 A8MU10 97 aa4.61□□□□□ -1.67
USP3-219ENST00000561326 K7ERS5 55 aa4.61□□□□□ -1.67
USP3-219ENST00000561326 KRTAP9-3Q9BYQ3 159 aa4.58□□□□□ -1.68
USP3-219ENST00000561326 FSIP2Q5CZC0 6907 aa4.57□□□□□ -1.68
USP3-219ENST00000561326 A6NN06 94 aa4.57□□□□□ -1.68
USP3-219ENST00000561326 KRTAP19-1Q8IUB9 90 aa4.57□□□□□ -1.68
USP3-219ENST00000561326 SPINT4Q6UDR6 99 aa4.56□□□□□ -1.68
USP3-219ENST00000561326 PRO0628Q9UI54 55 aa4.54□□□□□ -1.68
USP3-219ENST00000561326 KRTAP12-1P59990 96 aa4.53□□□□□ -1.68
USP3-219ENST00000561326 PLAC4Q8WY50 150 aa4.53□□□□□ -1.68
USP3-219ENST00000561326 KRTAP19-8Q3LI54 63 aa4.5□□□□□ -1.69
USP3-219ENST00000561326 KRTAP12-2P59991 146 aa4.49□□□□□ -1.69
USP3-219ENST00000561326 CRCT1Q9UGL9 99 aa4.48□□□□□ -1.69
USP3-219ENST00000561326 CAMK2N1Q7Z7J9 78 aa4.46□□□□□ -1.7
USP3-219ENST00000561326 PMAIP1Q13794 54 aa4.45□□□□□ -1.7
USP3-219ENST00000561326 MT1BP07438 61 aa4.41□□□□□ -1.7
USP3-219ENST00000561326 ROMO1P60602 79 aa4.34□□□□□ -1.71
USP3-219ENST00000561326 KRTAP4-8Q9BYQ9 185 aa4.34□□□□□ -1.71
USP3-219ENST00000561326 PRO2289Q9P1D8 64 aa4.33□□□□□ -1.72
USP3-219ENST00000561326 C10orf95Q9H7T3 257 aa4.28□□□□□ -1.72
USP3-219ENST00000561326 USH2AO75445 5202 aa4.27□□□□□ -1.73
USP3-219ENST00000561326 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.27□□□□□ -1.73
USP3-219ENST00000561326 KRTAP9-7A8MTY7 169 aa4.26□□□□□ -1.73
USP3-219ENST00000561326 MT1XP80297 61 aa4.26□□□□□ -1.73
USP3-219ENST00000561326 KRTAP10-5P60370 271 aa4.25□□□□□ -1.73
USP3-219ENST00000561326 TNP1P09430 55 aa4.23□□□□□ -1.73
USP3-219ENST00000561326 KRTAP25-1Q3LHN0 102 aa4.23□□□□□ -1.73
USP3-219ENST00000561326 KRTAP19-6Q3LI70 58 aa4.22□□□□□ -1.73
USP3-219ENST00000561326 KTN1-AS1Q86SY8 53 aa4.2□□□□□ -1.74
USP3-219ENST00000561326 LCE3BQ5TA77 95 aa4.16□□□□□ -1.74
USP3-219ENST00000561326 SSPOA2VEC9 5147 aa4.16□□□□□ -1.74
USP3-219ENST00000561326 KRTAP23-1A1A580 65 aa4.1□□□□□ -1.75
USP3-219ENST00000561326 PP632Q6XCG6 107 aa4.09□□□□□ -1.75
USP3-219ENST00000561326 KRTAP4-12Q9BQ66 201 aa4.09□□□□□ -1.75
USP3-219ENST00000561326 PRAC1Q96KF2 57 aa4.08□□□□□ -1.76
USP3-219ENST00000561326 KRTAP10-7P60409 375 aaPredicted RBP4.07□□□□□ -1.76
USP3-219ENST00000561326 KRTAP10-12P60413 245 aa4.06□□□□□ -1.76
USP3-219ENST00000561326 KRTAP9-9Q9BYP9 154 aa4.05□□□□□ -1.76
USP3-219ENST00000561326 KRTAP9-4Q9BYQ2 154 aa4.05□□□□□ -1.76
USP3-219ENST00000561326 SYNE2Q8WXH0 6885 aaKnown RBP4.03□□□□□ -1.76
USP3-219ENST00000561326 FCGBPQ9Y6R7 5405 aaPredicted RBP4.02□□□□□ -1.77
USP3-219ENST00000561326 KRTAP4-8A0A0G2JLE6 195 aa4.01□□□□□ -1.77
USP3-219ENST00000561326 LCE3AQ5TA76 89 aa3.99□□□□□ -1.77
USP3-219ENST00000561326 SVIPQ8NHG7 77 aa3.98□□□□□ -1.77
USP3-219ENST00000561326 MACF1Q9UPN3 7388 aaKnown RBP3.97□□□□□ -1.77
USP3-219ENST00000561326 KRTAP8-1Q8IUC2 63 aa3.93□□□□□ -1.78
USP3-219ENST00000561326 KRTAP4-7Q9BYR0 210 aa3.88□□□□□ -1.79
USP3-219ENST00000561326 KRTAP12-3P60328 96 aa3.87□□□□□ -1.79
USP3-219ENST00000561326 LCE1DQ5T752 114 aa3.87□□□□□ -1.79
USP3-219ENST00000561326 KRTAP19-5Q3LI72 72 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms