RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PSPHP1O15172 72 aa6.57□□□□□ -1.36
SNX1-211ENST00000560829 PRR15LQ9BU68 103 aa6.56□□□□□ -1.36
SNX1-211ENST00000560829 SPTSSBQ8NFR3 76 aa6.55□□□□□ -1.36
SNX1-211ENST00000560829 Q5VV11 94 aa6.54□□□□□ -1.36
SNX1-211ENST00000560829 RBM12B-AS1Q9P1G2 102 aa6.5□□□□□ -1.37
SNX1-211ENST00000560829 H1FX-AS1Q4G0G2 97 aa6.48□□□□□ -1.37
SNX1-211ENST00000560829 KRTAP4-1Q9BYQ7 146 aa6.47□□□□□ -1.37
SNX1-211ENST00000560829 A0A1B0GU69 56 aa6.46□□□□□ -1.38
SNX1-211ENST00000560829 LCA10Q71F78 164 aa6.45□□□□□ -1.38
SNX1-211ENST00000560829 S4R3F8 94 aa6.45□□□□□ -1.38
SNX1-211ENST00000560829 SEC61GP60059 68 aa6.39□□□□□ -1.39
SNX1-211ENST00000560829 BRK1Q8WUW1 75 aa6.38□□□□□ -1.39
SNX1-211ENST00000560829 A6NED7 52 aa6.37□□□□□ -1.39
SNX1-211ENST00000560829 KRTAP19-2Q3LHN2 52 aa6.35□□□□□ -1.39
SNX1-211ENST00000560829 MUC2Q02817 5179 aa6.34□□□□□ -1.39
SNX1-211ENST00000560829 PRO0628Q9UI54 55 aa6.32□□□□□ -1.4
SNX1-211ENST00000560829 CDC42SE1Q9NRR8 79 aa6.3□□□□□ -1.4
SNX1-211ENST00000560829 UQCR11O14957 56 aa6.3□□□□□ -1.4
SNX1-211ENST00000560829 CSAG1Q6PB30 78 aa6.3□□□□□ -1.4
SNX1-211ENST00000560829 UBR4Q5T4S7 5183 aa6.26□□□□□ -1.41
SNX1-211ENST00000560829 A8MU10 97 aa6.26□□□□□ -1.41
SNX1-211ENST00000560829 KRTAP10-6P60371 365 aaPredicted RBP6.26□□□□□ -1.41
SNX1-211ENST00000560829 SPATA8Q6RVD6 105 aa6.26□□□□□ -1.41
SNX1-211ENST00000560829 A0A1B0GU33 70 aa6.24□□□□□ -1.41
SNX1-211ENST00000560829 RNF213Q63HN8 5207 aa6.24□□□□□ -1.41
SNX1-211ENST00000560829 MIR22HGQ0VDD5 57 aa6.23□□□□□ -1.41
SNX1-211ENST00000560829 FLGP20930 4061 aaPredicted RBP6.22□□□□□ -1.41
SNX1-211ENST00000560829 H0YAA0 97 aa6.22□□□□□ -1.41
SNX1-211ENST00000560829 ADM2Q7Z4H4 148 aa6.17□□□□□ -1.42
SNX1-211ENST00000560829 P0C880 135 aa6.16□□□□□ -1.42
SNX1-211ENST00000560829 LCE2CQ5TA81 110 aa6.15□□□□□ -1.43
SNX1-211ENST00000560829 LOC100996750A0A140TA64 210 aa6.13□□□□□ -1.43
SNX1-211ENST00000560829 KRTAP4-6Q9BYQ5 205 aa6.13□□□□□ -1.43
SNX1-211ENST00000560829 FAT4Q6V0I7 4981 aa6.09□□□□□ -1.43
SNX1-211ENST00000560829 KRTAP13-4Q3LI77 160 aa6.09□□□□□ -1.44
SNX1-211ENST00000560829 M0QZ58 72 aa6.04□□□□□ -1.44
SNX1-211ENST00000560829 PMAIP1Q13794 54 aa6.04□□□□□ -1.44
SNX1-211ENST00000560829 A6NN06 94 aa6.02□□□□□ -1.45
SNX1-211ENST00000560829 MT1HP80294 61 aa6□□□□□ -1.45
SNX1-211ENST00000560829 R4GN34 69 aa5.95□□□□□ -1.46
SNX1-211ENST00000560829 LORP23490 312 aaPredicted RBP5.94□□□□□ -1.46
SNX1-211ENST00000560829 A0A0D9SG42 100 aa5.94□□□□□ -1.46
SNX1-211ENST00000560829 K7ERS5 55 aa5.92□□□□□ -1.46
SNX1-211ENST00000560829 M0R2T5 61 aa5.9□□□□□ -1.46
SNX1-211ENST00000560829 CRIPTQ9P021 101 aa5.9□□□□□ -1.47
SNX1-211ENST00000560829 LCE2BO14633 110 aa5.87□□□□□ -1.47
SNX1-211ENST00000560829 KRTAP12-1P59990 96 aa5.86□□□□□ -1.47
SNX1-211ENST00000560829 KRTAP12-2P59991 146 aa5.84□□□□□ -1.47
SNX1-211ENST00000560829 KTN1-AS1Q86SY8 53 aa5.84□□□□□ -1.47
SNX1-211ENST00000560829 LINC01554Q52M75 96 aa5.81□□□□□ -1.48
SNX1-211ENST00000560829 KRTAP9-8Q9BYQ0 159 aa5.81□□□□□ -1.48
SNX1-211ENST00000560829 SPINT4Q6UDR6 99 aa5.79□□□□□ -1.48
SNX1-211ENST00000560829 MT2AP02795 61 aa5.79□□□□□ -1.48
SNX1-211ENST00000560829 H3BS24 57 aa5.77□□□□□ -1.49
SNX1-211ENST00000560829 MT1FP04733 61 aa5.75□□□□□ -1.49
SNX1-211ENST00000560829 SPRR2GQ9BYE4 73 aa5.75□□□□□ -1.49
SNX1-211ENST00000560829 KRTAP10-10P60014 251 aa5.72□□□□□ -1.49
SNX1-211ENST00000560829 KRTAP19-1Q8IUB9 90 aa5.71□□□□□ -1.5
SNX1-211ENST00000560829 ROMO1P60602 79 aa5.71□□□□□ -1.5
SNX1-211ENST00000560829 LCE2AQ5TA79 106 aaPredicted RBP5.7□□□□□ -1.5
SNX1-211ENST00000560829 PRAC1Q96KF2 57 aa5.64□□□□□ -1.51
SNX1-211ENST00000560829 KRTAP9-3Q9BYQ3 159 aa5.59□□□□□ -1.51
SNX1-211ENST00000560829 KRTAP19-8Q3LI54 63 aa5.58□□□□□ -1.52
SNX1-211ENST00000560829 CAMK2N1Q7Z7J9 78 aa5.57□□□□□ -1.52
SNX1-211ENST00000560829 C10orf95Q9H7T3 257 aa5.54□□□□□ -1.52
SNX1-211ENST00000560829 PLAC4Q8WY50 150 aa5.54□□□□□ -1.52
SNX1-211ENST00000560829 KRTAP25-1Q3LHN0 102 aa5.51□□□□□ -1.53
SNX1-211ENST00000560829 MT1BP07438 61 aa5.49□□□□□ -1.53
SNX1-211ENST00000560829 KRTAP4-8Q9BYQ9 185 aa5.39□□□□□ -1.55
SNX1-211ENST00000560829 TNP1P09430 55 aa5.34□□□□□ -1.55
SNX1-211ENST00000560829 KRTAP10-5P60370 271 aa5.33□□□□□ -1.56
SNX1-211ENST00000560829 MT1XP80297 61 aa5.33□□□□□ -1.56
SNX1-211ENST00000560829 USH2AO75445 5202 aa5.31□□□□□ -1.56
SNX1-211ENST00000560829 A0A0A0MQY5 61 aa5.31□□□□□ -1.56
SNX1-211ENST00000560829 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.29□□□□□ -1.56
SNX1-211ENST00000560829 PP632Q6XCG6 107 aa5.27□□□□□ -1.57
SNX1-211ENST00000560829 KRTAP9-2Q9BYQ4 174 aa5.27□□□□□ -1.57
SNX1-211ENST00000560829 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
SNX1-211ENST00000560829 KRTAP9-6A0A140TA67 174 aa5.25□□□□□ -1.57
SNX1-211ENST00000560829 PRO2289Q9P1D8 64 aa5.24□□□□□ -1.57
SNX1-211ENST00000560829 SSPOA2VEC9 5147 aa5.12□□□□□ -1.59
SNX1-211ENST00000560829 KRTAP10-7P60409 375 aaPredicted RBP5.11□□□□□ -1.59
SNX1-211ENST00000560829 LCE3AQ5TA76 89 aa5.09□□□□□ -1.59
SNX1-211ENST00000560829 KRTAP10-12P60413 245 aa5.08□□□□□ -1.6
SNX1-211ENST00000560829 KRTAP4-8A0A0G2JLE6 195 aa5.07□□□□□ -1.6
SNX1-211ENST00000560829 LCE3BQ5TA77 95 aa5.07□□□□□ -1.6
SNX1-211ENST00000560829 KRTAP19-6Q3LI70 58 aa5.07□□□□□ -1.6
SNX1-211ENST00000560829 KRTAP8-1Q8IUC2 63 aa5.03□□□□□ -1.6
SNX1-211ENST00000560829 FSIP2Q5CZC0 6907 aa5□□□□□ -1.61
SNX1-211ENST00000560829 KRTAP9-9Q9BYP9 154 aa5□□□□□ -1.61
SNX1-211ENST00000560829 KRTAP9-4Q9BYQ2 154 aa5□□□□□ -1.61
SNX1-211ENST00000560829 KRTAP4-7Q9BYR0 210 aa4.94□□□□□ -1.62
SNX1-211ENST00000560829 KRTAP4-12Q9BQ66 201 aa4.92□□□□□ -1.62
SNX1-211ENST00000560829 KMT2DO14686 5537 aa4.91□□□□□ -1.62
SNX1-211ENST00000560829 KRTAP15-1Q3LI76 137 aa4.91□□□□□ -1.62
SNX1-211ENST00000560829 KRTAP12-3P60328 96 aa4.9□□□□□ -1.63
SNX1-211ENST00000560829 FCGBPQ9Y6R7 5405 aaPredicted RBP4.87□□□□□ -1.63
SNX1-211ENST00000560829 KRTAP19-5Q3LI72 72 aa4.83□□□□□ -1.64
SNX1-211ENST00000560829 KRTAP19-7Q3SYF9 63 aa4.76□□□□□ -1.65
SNX1-211ENST00000560829 LCE1DQ5T752 114 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms