RNA–Protein interactions for RNA: ENST00000559494.1

TSPAN3-207, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-207ENST00000559494 KRTAP3-3Q9BYR6 98 aa9.54□□□□□ -0.88
TSPAN3-207ENST00000559494 CSAG1Q6PB30 78 aa9.53□□□□□ -0.88
TSPAN3-207ENST00000559494 SNURFQ9Y675 71 aa9.5□□□□□ -0.89
TSPAN3-207ENST00000559494 A8MUN3 132 aa9.47□□□□□ -0.89
TSPAN3-207ENST00000559494 C20orf197Q8N268 126 aa9.46□□□□□ -0.9
TSPAN3-207ENST00000559494 LCE2BO14633 110 aa9.45□□□□□ -0.9
TSPAN3-207ENST00000559494 USH2AO75445 5202 aa9.44□□□□□ -0.9
TSPAN3-207ENST00000559494 COX7CP15954 63 aa9.4□□□□□ -0.9
TSPAN3-207ENST00000559494 DMAC1Q96GE9 116 aa9.38□□□□□ -0.91
TSPAN3-207ENST00000559494 NDUFC1O43677 76 aa9.36□□□□□ -0.91
TSPAN3-207ENST00000559494 ANAPC13Q9BS18 74 aa9.32□□□□□ -0.92
TSPAN3-207ENST00000559494 SSPOA2VEC9 5147 aa9.29□□□□□ -0.92
TSPAN3-207ENST00000559494 KRTAP9-7A8MTY7 169 aa9.27□□□□□ -0.93
TSPAN3-207ENST00000559494 CYSTM1Q9H1C7 97 aa9.26□□□□□ -0.93
TSPAN3-207ENST00000559494 SPANXA2-OT1Q8N9U9 137 aa9.24□□□□□ -0.93
TSPAN3-207ENST00000559494 ACYP2P14621 99 aa9.22□□□□□ -0.93
TSPAN3-207ENST00000559494 KRTAP19-1Q8IUB9 90 aa9.22□□□□□ -0.93
TSPAN3-207ENST00000559494 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.2□□□□□ -0.94
TSPAN3-207ENST00000559494 H0YAA0 97 aa9.19□□□□□ -0.94
TSPAN3-207ENST00000559494 CCDC179H3BU77 68 aa9.17□□□□□ -0.94
TSPAN3-207ENST00000559494 H7BZZ5 65 aa9.16□□□□□ -0.94
TSPAN3-207ENST00000559494 SPRR2GQ9BYE4 73 aa9.14□□□□□ -0.95
TSPAN3-207ENST00000559494 ADM2Q7Z4H4 148 aa9.11□□□□□ -0.95
TSPAN3-207ENST00000559494 CRIPTQ9P021 101 aa9.07□□□□□ -0.96
TSPAN3-207ENST00000559494 CHKB-CPT1BH3BT56 60 aa9.05□□□□□ -0.96
TSPAN3-207ENST00000559494 KRTAP19-8Q3LI54 63 aa9.04□□□□□ -0.96
TSPAN3-207ENST00000559494 KRTAP19-6Q3LI70 58 aa9.03□□□□□ -0.96
TSPAN3-207ENST00000559494 FCGBPQ9Y6R7 5405 aaPredicted RBP9.02□□□□□ -0.96
TSPAN3-207ENST00000559494 MT1BP07438 61 aa9.01□□□□□ -0.97
TSPAN3-207ENST00000559494 KRTAP3-2Q9BYR7 98 aa9□□□□□ -0.97
TSPAN3-207ENST00000559494 P0C880 135 aa8.99□□□□□ -0.97
TSPAN3-207ENST00000559494 COA5Q86WW8 74 aa8.99□□□□□ -0.97
TSPAN3-207ENST00000559494 SPTSSBQ8NFR3 76 aa8.98□□□□□ -0.97
TSPAN3-207ENST00000559494 Q5VV11 94 aa8.97□□□□□ -0.97
TSPAN3-207ENST00000559494 R4GN34 69 aa8.83□□□□□ -1
TSPAN3-207ENST00000559494 ATP5EP56381 51 aaPredicted RBP8.8□□□□□ -1
TSPAN3-207ENST00000559494 M0QZ58 72 aa8.8□□□□□ -1
TSPAN3-207ENST00000559494 TMEM258P61165 79 aa8.78□□□□□ -1
TSPAN3-207ENST00000559494 A6NN06 94 aa8.72□□□□□ -1.01
TSPAN3-207ENST00000559494 KRTAP10-5P60370 271 aa8.71□□□□□ -1.02
TSPAN3-207ENST00000559494 SYNE2Q8WXH0 6885 aaKnown RBP8.68□□□□□ -1.02
TSPAN3-207ENST00000559494 MACF1Q9UPN3 7388 aaKnown RBP8.67□□□□□ -1.02
TSPAN3-207ENST00000559494 LINC01554Q52M75 96 aa8.65□□□□□ -1.02
TSPAN3-207ENST00000559494 PCP4P48539 62 aa8.63□□□□□ -1.03
TSPAN3-207ENST00000559494 PLAC4Q8WY50 150 aa8.63□□□□□ -1.03
TSPAN3-207ENST00000559494 SEC61GP60059 68 aa8.57□□□□□ -1.04
TSPAN3-207ENST00000559494 SERP1Q9Y6X1 66 aa8.57□□□□□ -1.04
TSPAN3-207ENST00000559494 KRTAP13-4Q3LI77 160 aa8.54□□□□□ -1.04
TSPAN3-207ENST00000559494 MT1XP80297 61 aa8.52□□□□□ -1.05
TSPAN3-207ENST00000559494 A0A1B0GU69 56 aa8.49□□□□□ -1.05
TSPAN3-207ENST00000559494 PRO2289Q9P1D8 64 aa8.45□□□□□ -1.06
TSPAN3-207ENST00000559494 A0A1B0GU33 70 aa8.44□□□□□ -1.06
TSPAN3-207ENST00000559494 LINC01558Q9Y6Z2 57 aa8.43□□□□□ -1.06
TSPAN3-207ENST00000559494 SPATA8Q6RVD6 105 aa8.39□□□□□ -1.07
TSPAN3-207ENST00000559494 KRTAP6-3Q3LI67 103 aa8.36□□□□□ -1.07
TSPAN3-207ENST00000559494 PRR15LQ9BU68 103 aa8.34□□□□□ -1.07
TSPAN3-207ENST00000559494 A0A0D9SG42 100 aa8.29□□□□□ -1.08
TSPAN3-207ENST00000559494 KRTAP12-2P59991 146 aa8.22□□□□□ -1.09
TSPAN3-207ENST00000559494 Q1T7F1 81 aa8.2□□□□□ -1.1
TSPAN3-207ENST00000559494 SMIM26A0A096LP01 95 aa8.19□□□□□ -1.1
TSPAN3-207ENST00000559494 A8MU10 97 aa8.19□□□□□ -1.1
TSPAN3-207ENST00000559494 RPS28P62857 69 aaKnown RBP8.19□□□□□ -1.1
TSPAN3-207ENST00000559494 NEBP20929 6669 aa8.19□□□□□ -1.1
TSPAN3-207ENST00000559494 KMT2DO14686 5537 aa8.18□□□□□ -1.1
TSPAN3-207ENST00000559494 CAMK2N1Q7Z7J9 78 aa8.17□□□□□ -1.1
TSPAN3-207ENST00000559494 V9GYY9 64 aa8.17□□□□□ -1.1
TSPAN3-207ENST00000559494 KRTAP12-1P59990 96 aa8.15□□□□□ -1.1
TSPAN3-207ENST00000559494 KRTAP10-7P60409 375 aaPredicted RBP8.14□□□□□ -1.11
TSPAN3-207ENST00000559494 SPINT4Q6UDR6 99 aa8.14□□□□□ -1.11
TSPAN3-207ENST00000559494 PSPHP1O15172 72 aa8.13□□□□□ -1.11
TSPAN3-207ENST00000559494 MUC12Q9UKN1 5478 aa8.11□□□□□ -1.11
TSPAN3-207ENST00000559494 KRTAP5-9P26371 169 aa8.1□□□□□ -1.11
TSPAN3-207ENST00000559494 UQCR11O14957 56 aa8.09□□□□□ -1.11
TSPAN3-207ENST00000559494 KRTAP10-12P60413 245 aa8.08□□□□□ -1.12
TSPAN3-207ENST00000559494 KRTAP4-8A0A0G2JLE6 195 aa8.06□□□□□ -1.12
TSPAN3-207ENST00000559494 KRTAP4-8Q9BYQ9 185 aa8.06□□□□□ -1.12
TSPAN3-207ENST00000559494 KRTAP20-1Q3LI63 56 aa8.05□□□□□ -1.12
TSPAN3-207ENST00000559494 KRTAP8-1Q8IUC2 63 aa8.02□□□□□ -1.13
TSPAN3-207ENST00000559494 MIR22HGQ0VDD5 57 aa7.98□□□□□ -1.13
TSPAN3-207ENST00000559494 SPRR2FQ96RM1 72 aa7.94□□□□□ -1.14
TSPAN3-207ENST00000559494 MDN1Q9NU22 5596 aa7.87□□□□□ -1.15
TSPAN3-207ENST00000559494 A6NED7 52 aa7.85□□□□□ -1.15
TSPAN3-207ENST00000559494 C10orf95Q9H7T3 257 aa7.78□□□□□ -1.16
TSPAN3-207ENST00000559494 SPRR2EP22531 72 aa7.74□□□□□ -1.17
TSPAN3-207ENST00000559494 SPRR2BP35325 72 aa7.74□□□□□ -1.17
TSPAN3-207ENST00000559494 SPRR2AP35326 72 aa7.74□□□□□ -1.17
TSPAN3-207ENST00000559494 LCE1AQ5T7P2 110 aa7.71□□□□□ -1.18
TSPAN3-207ENST00000559494 K7ERS5 55 aa7.67□□□□□ -1.18
TSPAN3-207ENST00000559494 KRTAP2-3P0C7H8 128 aa7.65□□□□□ -1.18
TSPAN3-207ENST00000559494 KRTAP2-4Q9BYR9 128 aa7.65□□□□□ -1.18
TSPAN3-207ENST00000559494 TNP1P09430 55 aa7.64□□□□□ -1.19
TSPAN3-207ENST00000559494 KRTAP19-7Q3SYF9 63 aa7.61□□□□□ -1.19
TSPAN3-207ENST00000559494 CDC42SE1Q9NRR8 79 aa7.6□□□□□ -1.19
TSPAN3-207ENST00000559494 MT1EP04732 61 aa7.52□□□□□ -1.21
TSPAN3-207ENST00000559494 KRTAP19-5Q3LI72 72 aa7.51□□□□□ -1.21
TSPAN3-207ENST00000559494 LCE3AQ5TA76 89 aa7.51□□□□□ -1.21
TSPAN3-207ENST00000559494 SPRR2DP22532 72 aa7.47□□□□□ -1.21
TSPAN3-207ENST00000559494 KRTAP25-1Q3LHN0 102 aa7.39□□□□□ -1.23
TSPAN3-207ENST00000559494 KRTAP19-3Q7Z4W3 81 aa7.37□□□□□ -1.23
TSPAN3-207ENST00000559494 KRTAP2-2Q9BYT5 123 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms