RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SPTSSBQ8NFR3 76 aa8.93□□□□□ -0.98
LDLR-206ENST00000557958 A6NN06 94 aa8.91□□□□□ -0.98
LDLR-206ENST00000557958 KTN1-AS1Q86SY8 53 aa8.91□□□□□ -0.98
LDLR-206ENST00000557958 SEC61GP60059 68 aa8.87□□□□□ -0.99
LDLR-206ENST00000557958 LPAP08519 4548 aa8.84□□□□□ -0.99
LDLR-206ENST00000557958 HERC1Q15751 4861 aa8.81□□□□□ -1
LDLR-206ENST00000557958 COX6B2Q6YFQ2 88 aa8.79□□□□□ -1
LDLR-206ENST00000557958 A0A1B0GU69 56 aa8.77□□□□□ -1.01
LDLR-206ENST00000557958 KRTAP3-1Q9BYR8 98 aa8.72□□□□□ -1.01
LDLR-206ENST00000557958 SPATA8Q6RVD6 105 aa8.7□□□□□ -1.02
LDLR-206ENST00000557958 LRP2P98164 4655 aa8.69□□□□□ -1.02
LDLR-206ENST00000557958 SEC61BP60468 96 aaKnown RBP8.65□□□□□ -1.02
LDLR-206ENST00000557958 UQCR11O14957 56 aa8.64□□□□□ -1.03
LDLR-206ENST00000557958 RBM12B-AS1Q9P1G2 102 aa8.64□□□□□ -1.03
LDLR-206ENST00000557958 HMCN2Q8NDA2 5059 aa8.62□□□□□ -1.03
LDLR-206ENST00000557958 MIR22HGQ0VDD5 57 aa8.61□□□□□ -1.03
LDLR-206ENST00000557958 S4R3F8 94 aa8.53□□□□□ -1.04
LDLR-206ENST00000557958 H1FX-AS1Q4G0G2 97 aa8.52□□□□□ -1.05
LDLR-206ENST00000557958 KRTAP4-1Q9BYQ7 146 aa8.48□□□□□ -1.05
LDLR-206ENST00000557958 KRTAP3-3Q9BYR6 98 aa8.41□□□□□ -1.06
LDLR-206ENST00000557958 PRAC1Q96KF2 57 aa8.39□□□□□ -1.07
LDLR-206ENST00000557958 MUC17Q685J3 4493 aa8.39□□□□□ -1.07
LDLR-206ENST00000557958 ADM2Q7Z4H4 148 aa8.36□□□□□ -1.07
LDLR-206ENST00000557958 A0A1B0GU33 70 aa8.32□□□□□ -1.08
LDLR-206ENST00000557958 H0YAA0 97 aa8.32□□□□□ -1.08
LDLR-206ENST00000557958 CSAG1Q6PB30 78 aa8.32□□□□□ -1.08
LDLR-206ENST00000557958 MUC2Q02817 5179 aa8.31□□□□□ -1.08
LDLR-206ENST00000557958 UBR4Q5T4S7 5183 aa8.29□□□□□ -1.08
LDLR-206ENST00000557958 LINC01554Q52M75 96 aa8.23□□□□□ -1.09
LDLR-206ENST00000557958 KRTAP10-6P60371 365 aaPredicted RBP8.19□□□□□ -1.1
LDLR-206ENST00000557958 RNF213Q63HN8 5207 aa8.18□□□□□ -1.1
LDLR-206ENST00000557958 KRTAP3-2Q9BYR7 98 aa8.17□□□□□ -1.1
LDLR-206ENST00000557958 KRTAP19-2Q3LHN2 52 aa8.14□□□□□ -1.11
LDLR-206ENST00000557958 P0C880 135 aa8.09□□□□□ -1.11
LDLR-206ENST00000557958 K7ERS5 55 aa8.07□□□□□ -1.12
LDLR-206ENST00000557958 LCE2CQ5TA81 110 aa8.04□□□□□ -1.12
LDLR-206ENST00000557958 KRTAP25-1Q3LHN0 102 aa8.02□□□□□ -1.13
LDLR-206ENST00000557958 M0QZ58 72 aa8□□□□□ -1.13
LDLR-206ENST00000557958 KRTAP13-4Q3LI77 160 aa7.98□□□□□ -1.13
LDLR-206ENST00000557958 M0R2T5 61 aa7.96□□□□□ -1.13
LDLR-206ENST00000557958 FAT4Q6V0I7 4981 aa7.95□□□□□ -1.14
LDLR-206ENST00000557958 A0A0D9SG42 100 aa7.92□□□□□ -1.14
LDLR-206ENST00000557958 MT1HP80294 61 aa7.92□□□□□ -1.14
LDLR-206ENST00000557958 R4GN34 69 aa7.89□□□□□ -1.15
LDLR-206ENST00000557958 ROMO1P60602 79 aa7.88□□□□□ -1.15
LDLR-206ENST00000557958 FLGP20930 4061 aaPredicted RBP7.87□□□□□ -1.15
LDLR-206ENST00000557958 CRIPTQ9P021 101 aa7.75□□□□□ -1.17
LDLR-206ENST00000557958 SPINT4Q6UDR6 99 aa7.74□□□□□ -1.17
LDLR-206ENST00000557958 KRTAP12-1P59990 96 aa7.73□□□□□ -1.17
LDLR-206ENST00000557958 LORP23490 312 aaPredicted RBP7.71□□□□□ -1.18
LDLR-206ENST00000557958 KRTAP12-2P59991 146 aa7.71□□□□□ -1.18
LDLR-206ENST00000557958 LCE2AQ5TA79 106 aaPredicted RBP7.66□□□□□ -1.18
LDLR-206ENST00000557958 KRTAP10-10P60014 251 aa7.59□□□□□ -1.19
LDLR-206ENST00000557958 KRTAP9-8Q9BYQ0 159 aa7.59□□□□□ -1.19
LDLR-206ENST00000557958 MT2AP02795 61 aa7.58□□□□□ -1.2
LDLR-206ENST00000557958 MT1FP04733 61 aa7.54□□□□□ -1.2
LDLR-206ENST00000557958 C10orf95Q9H7T3 257 aa7.49□□□□□ -1.21
LDLR-206ENST00000557958 H3BS24 57 aa7.48□□□□□ -1.21
LDLR-206ENST00000557958 SPRR2GQ9BYE4 73 aa7.45□□□□□ -1.22
LDLR-206ENST00000557958 CAMK2N1Q7Z7J9 78 aa7.43□□□□□ -1.22
LDLR-206ENST00000557958 KRTAP19-1Q8IUB9 90 aa7.36□□□□□ -1.23
LDLR-206ENST00000557958 PLAC4Q8WY50 150 aa7.33□□□□□ -1.24
LDLR-206ENST00000557958 KRTAP15-1Q3LI76 137 aa7.32□□□□□ -1.24
LDLR-206ENST00000557958 KRTAP9-3Q9BYQ3 159 aa7.32□□□□□ -1.24
LDLR-206ENST00000557958 KRTAP19-8Q3LI54 63 aa7.21□□□□□ -1.26
LDLR-206ENST00000557958 LCE2BO14633 110 aa7.16□□□□□ -1.26
LDLR-206ENST00000557958 TNP1P09430 55 aa7.11□□□□□ -1.27
LDLR-206ENST00000557958 MT1BP07438 61 aa7.08□□□□□ -1.28
LDLR-206ENST00000557958 NDUFAF8A1L188 74 aa7.07□□□□□ -1.28
LDLR-206ENST00000557958 PP632Q6XCG6 107 aa7.07□□□□□ -1.28
LDLR-206ENST00000557958 LCE2DQ5TA82 110 aaPredicted RBP7□□□□□ -1.29
LDLR-206ENST00000557958 KRTAP23-1A1A580 65 aa6.96□□□□□ -1.29
LDLR-206ENST00000557958 USH2AO75445 5202 aa6.93□□□□□ -1.3
LDLR-206ENST00000557958 PRO2289Q9P1D8 64 aa6.92□□□□□ -1.3
LDLR-206ENST00000557958 FSIP2Q5CZC0 6907 aa6.9□□□□□ -1.3
LDLR-206ENST00000557958 MT1XP80297 61 aa6.9□□□□□ -1.31
LDLR-206ENST00000557958 KRTAP10-5P60370 271 aa6.89□□□□□ -1.31
LDLR-206ENST00000557958 KRTAP9-2Q9BYQ4 174 aa6.87□□□□□ -1.31
LDLR-206ENST00000557958 SSPOA2VEC9 5147 aa6.73□□□□□ -1.33
LDLR-206ENST00000557958 KRTAP19-6Q3LI70 58 aa6.7□□□□□ -1.34
LDLR-206ENST00000557958 KRTAP10-12P60413 245 aa6.68□□□□□ -1.34
LDLR-206ENST00000557958 LCE3AQ5TA76 89 aa6.68□□□□□ -1.34
LDLR-206ENST00000557958 LUZP6Q538Z0 58 aa6.66□□□□□ -1.34
LDLR-206ENST00000557958 KRTAP10-7P60409 375 aaPredicted RBP6.62□□□□□ -1.35
LDLR-206ENST00000557958 CRCT1Q9UGL9 99 aa6.61□□□□□ -1.35
LDLR-206ENST00000557958 SPRR5A0A1B0GTR4 108 aa6.58□□□□□ -1.36
LDLR-206ENST00000557958 KRTAP8-1Q8IUC2 63 aa6.58□□□□□ -1.36
LDLR-206ENST00000557958 KRTAP9-6A0A140TA67 174 aa6.49□□□□□ -1.37
LDLR-206ENST00000557958 FCGBPQ9Y6R7 5405 aaPredicted RBP6.48□□□□□ -1.37
LDLR-206ENST00000557958 KRTAP12-3P60328 96 aa6.45□□□□□ -1.38
LDLR-206ENST00000557958 KRTAP4-8A0A0G2JLE6 195 aa6.4□□□□□ -1.39
LDLR-206ENST00000557958 KRTAP4-8Q9BYQ9 185 aa6.4□□□□□ -1.39
LDLR-206ENST00000557958 A0A0A0MQY5 61 aa6.39□□□□□ -1.39
LDLR-206ENST00000557958 KMT2DO14686 5537 aa6.36□□□□□ -1.39
LDLR-206ENST00000557958 KRTAP19-5Q3LI72 72 aa6.29□□□□□ -1.4
LDLR-206ENST00000557958 MACF1Q9UPN3 7388 aaKnown RBP6.24□□□□□ -1.41
LDLR-206ENST00000557958 KRTAP19-7Q3SYF9 63 aa6.13□□□□□ -1.43
LDLR-206ENST00000557958 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.11□□□□□ -1.43
LDLR-206ENST00000557958 SYNE2Q8WXH0 6885 aaKnown RBP6.11□□□□□ -1.43
LDLR-206ENST00000557958 KRTAP19-4Q3LI73 84 aa6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms