RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 FAT4Q6V0I7 4981 aa2.54□□□□□ -2
SRP54-212ENST00000556992 LINC00313P59037 77 aa2.54□□□□□ -2
SRP54-212ENST00000556992 C1orf195Q5TG92 126 aa2.54□□□□□ -2
SRP54-212ENST00000556992 H7BZZ5 65 aa2.53□□□□□ -2
SRP54-212ENST00000556992 ATP5EP56381 51 aaPredicted RBP2.53□□□□□ -2
SRP54-212ENST00000556992 KRTAP10-4P60372 401 aaPredicted RBP2.53□□□□□ -2
SRP54-212ENST00000556992 LINC00304Q8N9R0 145 aa2.53□□□□□ -2
SRP54-212ENST00000556992 MRPL34Q9BQ48 92 aaKnown RBP2.53□□□□□ -2
SRP54-212ENST00000556992 CYSTM1Q9H1C7 97 aa2.53□□□□□ -2
SRP54-212ENST00000556992 MUC2Q02817 5179 aa2.52□□□□□ -2.01
SRP54-212ENST00000556992 H0Y9P7 68 aa2.52□□□□□ -2.01
SRP54-212ENST00000556992 NDUFS5O43920 106 aa2.52□□□□□ -2.01
SRP54-212ENST00000556992 C1orf64Q8NEQ6 169 aa2.52□□□□□ -2.01
SRP54-212ENST00000556992 ZCCHC13Q8WW36 166 aaKnown RBP2.52□□□□□ -2.01
SRP54-212ENST00000556992 LINC00208Q96KT6 92 aa2.52□□□□□ -2.01
SRP54-212ENST00000556992 LRP2P98164 4655 aa2.51□□□□□ -2.01
SRP54-212ENST00000556992 TRAV22A0A0B4J277 110 aa2.51□□□□□ -2.01
SRP54-212ENST00000556992 FAM236DA0A1B0GTK5 79 aa2.51□□□□□ -2.01
SRP54-212ENST00000556992 KRTAP5-8O75690 187 aa2.51□□□□□ -2.01
SRP54-212ENST00000556992 FAM236CP0DP71 79 aa2.51□□□□□ -2.01
SRP54-212ENST00000556992 LRP1Q07954 4544 aaKnown RBP2.5□□□□□ -2.01
SRP54-212ENST00000556992 SERP1Q9Y6X1 66 aa2.5□□□□□ -2.01
SRP54-212ENST00000556992 DNAH8Q96JB1 4490 aa2.5□□□□□ -2.01
SRP54-212ENST00000556992 FAT3Q8TDW7 4589 aa2.49□□□□□ -2.01
SRP54-212ENST00000556992 PRAC1Q96KF2 57 aa2.49□□□□□ -2.01
SRP54-212ENST00000556992 PKHD1L1Q86WI1 4243 aa2.49□□□□□ -2.01
SRP54-212ENST00000556992 LOC101927531A0A1B0GV80 90 aa2.48□□□□□ -2.01
SRP54-212ENST00000556992 LCE1CQ5T751 118 aa2.48□□□□□ -2.01
SRP54-212ENST00000556992 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
SRP54-212ENST00000556992 Q5VSD8 79 aa2.48□□□□□ -2.01
SRP54-212ENST00000556992 SPANXA2-OT1Q8N9U9 137 aa2.48□□□□□ -2.01
SRP54-212ENST00000556992 A8MU10 97 aa2.47□□□□□ -2.01
SRP54-212ENST00000556992 IGLV7-46A0A075B6I9 117 aa2.46□□□□□ -2.02
SRP54-212ENST00000556992 SMIM26A0A096LP01 95 aa2.46□□□□□ -2.02
SRP54-212ENST00000556992 Q5W150 140 aa2.46□□□□□ -2.02
SRP54-212ENST00000556992 CYP4F30PQ9H0H9 118 aa2.46□□□□□ -2.02
SRP54-212ENST00000556992 TNXBP22105 4242 aa2.45□□□□□ -2.02
SRP54-212ENST00000556992 FP248Q71RG6 208 aaPredicted RBP2.44□□□□□ -2.02
SRP54-212ENST00000556992 OXTP01178 125 aa2.43□□□□□ -2.02
SRP54-212ENST00000556992 PCOTHQ58A44 107 aa2.43□□□□□ -2.02
SRP54-212ENST00000556992 SVIPQ8NHG7 77 aa2.43□□□□□ -2.02
SRP54-212ENST00000556992 FLG2Q5D862 2391 aaPredicted RBP2.42□□□□□ -2.02
SRP54-212ENST00000556992 A8MUU9 505 aa2.42□□□□□ -2.02
SRP54-212ENST00000556992 PRR4Q16378 134 aa2.42□□□□□ -2.02
SRP54-212ENST00000556992 C20orf166-AS1Q96NR2 134 aa2.42□□□□□ -2.02
SRP54-212ENST00000556992 C9orf92A6NGG3 77 aa2.41□□□□□ -2.02
SRP54-212ENST00000556992 ACYP2P14621 99 aa2.41□□□□□ -2.02
SRP54-212ENST00000556992 RETNLBQ9BQ08 111 aa2.41□□□□□ -2.02
SRP54-212ENST00000556992 HRES1P13985 223 aa2.4□□□□□ -2.03
SRP54-212ENST00000556992 Q75L30 129 aa2.4□□□□□ -2.03
SRP54-212ENST00000556992 V9GYY9 64 aa2.4□□□□□ -2.03
SRP54-212ENST00000556992 MT1HL1P0DM35 61 aa2.39□□□□□ -2.03
SRP54-212ENST00000556992 Q1T7F1 81 aa2.39□□□□□ -2.03
SRP54-212ENST00000556992 ATP11AUNQ6ZP68 121 aa2.39□□□□□ -2.03
SRP54-212ENST00000556992 C7orf65Q6ZTY9 151 aa2.39□□□□□ -2.03
SRP54-212ENST00000556992 FSIP2Q5CZC0 6907 aa2.39□□□□□ -2.03
SRP54-212ENST00000556992 COA5Q86WW8 74 aa2.38□□□□□ -2.03
SRP54-212ENST00000556992 A8MUN3 132 aa2.37□□□□□ -2.03
SRP54-212ENST00000556992 SPINK7P58062 85 aa2.37□□□□□ -2.03
SRP54-212ENST00000556992 DMAC1Q96GE9 116 aa2.37□□□□□ -2.03
SRP54-212ENST00000556992 CHKB-CPT1BH3BT56 60 aa2.36□□□□□ -2.03
SRP54-212ENST00000556992 C4orf26Q17RF5 130 aa2.36□□□□□ -2.03
SRP54-212ENST00000556992 RPL37P61927 97 aaKnown RBP2.35□□□□□ -2.03
SRP54-212ENST00000556992 SPTSSBQ8NFR3 76 aa2.34□□□□□ -2.03
SRP54-212ENST00000556992 TPRXLQ17RH7 258 aa2.33□□□□□ -2.04
SRP54-212ENST00000556992 LINC01558Q9Y6Z2 57 aa2.32□□□□□ -2.04
SRP54-212ENST00000556992 PSPHP1O15172 72 aa2.31□□□□□ -2.04
SRP54-212ENST00000556992 COX6B2Q6YFQ2 88 aa2.31□□□□□ -2.04
SRP54-212ENST00000556992 PRR15LQ9BU68 103 aa2.31□□□□□ -2.04
SRP54-212ENST00000556992 LPAP08519 4548 aa2.3□□□□□ -2.04
SRP54-212ENST00000556992 SEC61GP60059 68 aa2.29□□□□□ -2.04
SRP54-212ENST00000556992 HMCN1Q96RW7 5635 aa2.28□□□□□ -2.04
SRP54-212ENST00000556992 A0A1B0GU69 56 aa2.28□□□□□ -2.04
SRP54-212ENST00000556992 Q5VV11 94 aa2.28□□□□□ -2.04
SRP54-212ENST00000556992 PRO0628Q9UI54 55 aa2.28□□□□□ -2.04
SRP54-212ENST00000556992 BRK1Q8WUW1 75 aa2.27□□□□□ -2.05
SRP54-212ENST00000556992 A6NED7 52 aa2.26□□□□□ -2.05
SRP54-212ENST00000556992 H1FX-AS1Q4G0G2 97 aa2.26□□□□□ -2.05
SRP54-212ENST00000556992 LCE3DQ9BYE3 92 aa2.26□□□□□ -2.05
SRP54-212ENST00000556992 RBM12B-AS1Q9P1G2 102 aa2.26□□□□□ -2.05
SRP54-212ENST00000556992 UQCR11O14957 56 aa2.23□□□□□ -2.05
SRP54-212ENST00000556992 CDC42SE1Q9NRR8 79 aa2.22□□□□□ -2.05
SRP54-212ENST00000556992 S4R3F8 94 aa2.22□□□□□ -2.05
SRP54-212ENST00000556992 CSAG1Q6PB30 78 aa2.21□□□□□ -2.06
SRP54-212ENST00000556992 SPATA8Q6RVD6 105 aa2.21□□□□□ -2.06
SRP54-212ENST00000556992 PP632Q6XCG6 107 aa2.21□□□□□ -2.06
SRP54-212ENST00000556992 LCA10Q71F78 164 aa2.21□□□□□ -2.06
SRP54-212ENST00000556992 CRCT1Q9UGL9 99 aa2.21□□□□□ -2.06
SRP54-212ENST00000556992 A0A1B0GU33 70 aa2.2□□□□□ -2.06
SRP54-212ENST00000556992 MIR22HGQ0VDD5 57 aa2.2□□□□□ -2.06
SRP54-212ENST00000556992 MUC17Q685J3 4493 aa2.18□□□□□ -2.06
SRP54-212ENST00000556992 PMAIP1Q13794 54 aa2.18□□□□□ -2.06
SRP54-212ENST00000556992 SSPOA2VEC9 5147 aa2.16□□□□□ -2.06
SRP54-212ENST00000556992 H0YAA0 97 aa2.15□□□□□ -2.07
SRP54-212ENST00000556992 KRTAP4-1Q9BYQ7 146 aa2.15□□□□□ -2.07
SRP54-212ENST00000556992 USH2AO75445 5202 aa2.14□□□□□ -2.07
SRP54-212ENST00000556992 ADM2Q7Z4H4 148 aa2.14□□□□□ -2.07
SRP54-212ENST00000556992 SYNE2Q8WXH0 6885 aaKnown RBP2.14□□□□□ -2.07
SRP54-212ENST00000556992 K7ERS5 55 aa2.13□□□□□ -2.07
SRP54-212ENST00000556992 M0QZ58 72 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms