RNA–Protein interactions for RNA: ENST00000556952.3

SIX4-203, Transcript of SIX homeobox 4, humanhuman

TSL 5

Gene SIX4, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-203ENST00000556952 SERP1Q9Y6X1 66 aa11.84□□□□□ -0.51
SIX4-203ENST00000556952 CHKB-CPT1BH3BT56 60 aa11.77□□□□□ -0.53
SIX4-203ENST00000556952 S4R3F8 94 aa11.74□□□□□ -0.53
SIX4-203ENST00000556952 FLGP20930 4061 aaPredicted RBP11.72□□□□□ -0.53
SIX4-203ENST00000556952 MT1HP80294 61 aa11.71□□□□□ -0.53
SIX4-203ENST00000556952 RPS28P62857 69 aaKnown RBP11.71□□□□□ -0.54
SIX4-203ENST00000556952 LCA10Q71F78 164 aa11.67□□□□□ -0.54
SIX4-203ENST00000556952 SPTSSBQ8NFR3 76 aa11.63□□□□□ -0.55
SIX4-203ENST00000556952 KRTAP3-3Q9BYR6 98 aa11.59□□□□□ -0.55
SIX4-203ENST00000556952 CSAG1Q6PB30 78 aa11.5□□□□□ -0.57
SIX4-203ENST00000556952 SMIM26A0A096LP01 95 aa11.49□□□□□ -0.57
SIX4-203ENST00000556952 M0R2T5 61 aa11.48□□□□□ -0.57
SIX4-203ENST00000556952 KRTAP10-6P60371 365 aaPredicted RBP11.41□□□□□ -0.58
SIX4-203ENST00000556952 LORP23490 312 aaPredicted RBP11.39□□□□□ -0.59
SIX4-203ENST00000556952 V9GYY9 64 aa11.35□□□□□ -0.59
SIX4-203ENST00000556952 Q1T7F1 81 aa11.33□□□□□ -0.6
SIX4-203ENST00000556952 LINC01558Q9Y6Z2 57 aa11.33□□□□□ -0.6
SIX4-203ENST00000556952 H0YAA0 97 aa11.26□□□□□ -0.61
SIX4-203ENST00000556952 KRTAP9-2Q9BYQ4 174 aa11.26□□□□□ -0.61
SIX4-203ENST00000556952 SEC61GP60059 68 aa11.24□□□□□ -0.61
SIX4-203ENST00000556952 A0A1B0GU69 56 aa11.22□□□□□ -0.61
SIX4-203ENST00000556952 PRR15LQ9BU68 103 aa11.2□□□□□ -0.62
SIX4-203ENST00000556952 ADM2Q7Z4H4 148 aa11.16□□□□□ -0.62
SIX4-203ENST00000556952 KRTAP9-8Q9BYQ0 159 aa11.15□□□□□ -0.62
SIX4-203ENST00000556952 LCE2DQ5TA82 110 aaPredicted RBP11.13□□□□□ -0.63
SIX4-203ENST00000556952 KRTAP3-2Q9BYR7 98 aa11.12□□□□□ -0.63
SIX4-203ENST00000556952 PSPHP1O15172 72 aa11.09□□□□□ -0.63
SIX4-203ENST00000556952 P0C880 135 aa11.04□□□□□ -0.64
SIX4-203ENST00000556952 MT2AP02795 61 aa11.03□□□□□ -0.64
SIX4-203ENST00000556952 Q5VV11 94 aa11.01□□□□□ -0.65
SIX4-203ENST00000556952 MT1FP04733 61 aa10.96□□□□□ -0.65
SIX4-203ENST00000556952 A0A1B0GU33 70 aa10.94□□□□□ -0.66
SIX4-203ENST00000556952 FSIP2Q5CZC0 6907 aa10.9□□□□□ -0.66
SIX4-203ENST00000556952 KRTAP10-10P60014 251 aa10.86□□□□□ -0.67
SIX4-203ENST00000556952 CRIPTQ9P021 101 aa10.86□□□□□ -0.67
SIX4-203ENST00000556952 UQCR11O14957 56 aa10.86□□□□□ -0.67
SIX4-203ENST00000556952 M0QZ58 72 aa10.82□□□□□ -0.68
SIX4-203ENST00000556952 R4GN34 69 aa10.81□□□□□ -0.68
SIX4-203ENST00000556952 A6NED7 52 aa10.79□□□□□ -0.68
SIX4-203ENST00000556952 KRTAP9-3Q9BYQ3 159 aa10.77□□□□□ -0.69
SIX4-203ENST00000556952 KRTAP13-4Q3LI77 160 aa10.74□□□□□ -0.69
SIX4-203ENST00000556952 KRTAP9-6A0A140TA67 174 aa10.73□□□□□ -0.69
SIX4-203ENST00000556952 USH2AO75445 5202 aa10.73□□□□□ -0.69
SIX4-203ENST00000556952 SPATA8Q6RVD6 105 aa10.72□□□□□ -0.69
SIX4-203ENST00000556952 MIR22HGQ0VDD5 57 aa10.69□□□□□ -0.7
SIX4-203ENST00000556952 CRCT1Q9UGL9 99 aa10.69□□□□□ -0.7
SIX4-203ENST00000556952 LCE2BO14633 110 aa10.66□□□□□ -0.7
SIX4-203ENST00000556952 SPRR2GQ9BYE4 73 aa10.65□□□□□ -0.71
SIX4-203ENST00000556952 KRTAP19-1Q8IUB9 90 aa10.6□□□□□ -0.71
SIX4-203ENST00000556952 CDC42SE1Q9NRR8 79 aa10.58□□□□□ -0.72
SIX4-203ENST00000556952 SSPOA2VEC9 5147 aa10.57□□□□□ -0.72
SIX4-203ENST00000556952 LINC01554Q52M75 96 aa10.54□□□□□ -0.72
SIX4-203ENST00000556952 A8MU10 97 aa10.53□□□□□ -0.72
SIX4-203ENST00000556952 A0A0D9SG42 100 aa10.52□□□□□ -0.72
SIX4-203ENST00000556952 BRK1Q8WUW1 75 aa10.49□□□□□ -0.73
SIX4-203ENST00000556952 A6NN06 94 aa10.44□□□□□ -0.74
SIX4-203ENST00000556952 KRTAP19-8Q3LI54 63 aa10.39□□□□□ -0.75
SIX4-203ENST00000556952 KRTAP12-1P59990 96 aa10.35□□□□□ -0.75
SIX4-203ENST00000556952 SPINT4Q6UDR6 99 aa10.31□□□□□ -0.76
SIX4-203ENST00000556952 K7ERS5 55 aa10.3□□□□□ -0.76
SIX4-203ENST00000556952 KRTAP12-2P59991 146 aa10.3□□□□□ -0.76
SIX4-203ENST00000556952 PLAC4Q8WY50 150 aa10.25□□□□□ -0.77
SIX4-203ENST00000556952 MT1BP07438 61 aa10.24□□□□□ -0.77
SIX4-203ENST00000556952 FCGBPQ9Y6R7 5405 aaPredicted RBP10.24□□□□□ -0.77
SIX4-203ENST00000556952 KRTAP19-6Q3LI70 58 aa10.18□□□□□ -0.78
SIX4-203ENST00000556952 PRO0628Q9UI54 55 aa10.17□□□□□ -0.78
SIX4-203ENST00000556952 CAMK2N1Q7Z7J9 78 aa10.09□□□□□ -0.79
SIX4-203ENST00000556952 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.95□□□□□ -0.82
SIX4-203ENST00000556952 MACF1Q9UPN3 7388 aaKnown RBP9.91□□□□□ -0.82
SIX4-203ENST00000556952 PMAIP1Q13794 54 aa9.91□□□□□ -0.82
SIX4-203ENST00000556952 MT1XP80297 61 aa9.86□□□□□ -0.83
SIX4-203ENST00000556952 PRO2289Q9P1D8 64 aa9.85□□□□□ -0.83
SIX4-203ENST00000556952 KRTAP10-5P60370 271 aa9.84□□□□□ -0.83
SIX4-203ENST00000556952 ROMO1P60602 79 aa9.8□□□□□ -0.84
SIX4-203ENST00000556952 C10orf95Q9H7T3 257 aa9.79□□□□□ -0.84
SIX4-203ENST00000556952 SYNE2Q8WXH0 6885 aaKnown RBP9.75□□□□□ -0.85
SIX4-203ENST00000556952 KRTAP9-7A8MTY7 169 aa9.71□□□□□ -0.86
SIX4-203ENST00000556952 SVIPQ8NHG7 77 aa9.66□□□□□ -0.86
SIX4-203ENST00000556952 TNP1P09430 55 aa9.58□□□□□ -0.88
SIX4-203ENST00000556952 KRTAP25-1Q3LHN0 102 aa9.56□□□□□ -0.88
SIX4-203ENST00000556952 KTN1-AS1Q86SY8 53 aa9.46□□□□□ -0.89
SIX4-203ENST00000556952 KRTAP10-7P60409 375 aaPredicted RBP9.44□□□□□ -0.9
SIX4-203ENST00000556952 KRTAP6-3Q3LI67 103 aa9.41□□□□□ -0.9
SIX4-203ENST00000556952 KRTAP10-12P60413 245 aa9.38□□□□□ -0.91
SIX4-203ENST00000556952 KMT2DO14686 5537 aa9.33□□□□□ -0.92
SIX4-203ENST00000556952 KRTAP23-1A1A580 65 aa9.26□□□□□ -0.93
SIX4-203ENST00000556952 PRAC1Q96KF2 57 aa9.26□□□□□ -0.93
SIX4-203ENST00000556952 PP632Q6XCG6 107 aa9.21□□□□□ -0.93
SIX4-203ENST00000556952 MUC12Q9UKN1 5478 aa9.18□□□□□ -0.94
SIX4-203ENST00000556952 LCE3AQ5TA76 89 aa9.17□□□□□ -0.94
SIX4-203ENST00000556952 KRTAP5-9P26371 169 aa9.16□□□□□ -0.94
SIX4-203ENST00000556952 NEBP20929 6669 aa9.11□□□□□ -0.95
SIX4-203ENST00000556952 KRTAP4-8A0A0G2JLE6 195 aa9.1□□□□□ -0.95
SIX4-203ENST00000556952 KRTAP4-8Q9BYQ9 185 aa9.1□□□□□ -0.95
SIX4-203ENST00000556952 KRTAP8-1Q8IUC2 63 aa9.05□□□□□ -0.96
SIX4-203ENST00000556952 MDN1Q9NU22 5596 aa8.99□□□□□ -0.97
SIX4-203ENST00000556952 SPRR2FQ96RM1 72 aa8.98□□□□□ -0.97
SIX4-203ENST00000556952 KRTAP19-5Q3LI72 72 aa8.85□□□□□ -0.99
SIX4-203ENST00000556952 KRTAP12-3P60328 96 aa8.83□□□□□ -1
SIX4-203ENST00000556952 KRTAP19-7Q3SYF9 63 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms