RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 KRTAP3-3Q9BYR6 98 aa10.61□□□□□ -0.71
TDP1-206ENST00000553569 USH2AO75445 5202 aa10.57□□□□□ -0.72
TDP1-206ENST00000553569 A8MUN3 132 aa10.57□□□□□ -0.72
TDP1-206ENST00000553569 TRAV7A0A075B6U4 112 aa10.53□□□□□ -0.72
TDP1-206ENST00000553569 SMIM20Q8N5G0 67 aa10.53□□□□□ -0.72
TDP1-206ENST00000553569 NDUFC1O43677 76 aa10.49□□□□□ -0.73
TDP1-206ENST00000553569 KRTAP3-2Q9BYR7 98 aa10.44□□□□□ -0.74
TDP1-206ENST00000553569 SSPOA2VEC9 5147 aa10.41□□□□□ -0.74
TDP1-206ENST00000553569 DMAC1Q96GE9 116 aa10.41□□□□□ -0.74
TDP1-206ENST00000553569 KRTAP19-1Q8IUB9 90 aa10.38□□□□□ -0.75
TDP1-206ENST00000553569 SNURFQ9Y675 71 aa10.33□□□□□ -0.76
TDP1-206ENST00000553569 SERP2Q8N6R1 65 aa10.28□□□□□ -0.76
TDP1-206ENST00000553569 H0YAA0 97 aa10.27□□□□□ -0.77
TDP1-206ENST00000553569 C20orf197Q8N268 126 aa10.25□□□□□ -0.77
TDP1-206ENST00000553569 SPRR2GQ9BYE4 73 aa10.25□□□□□ -0.77
TDP1-206ENST00000553569 ADM2Q7Z4H4 148 aa10.24□□□□□ -0.77
TDP1-206ENST00000553569 KRTAP19-6Q3LI70 58 aa10.23□□□□□ -0.77
TDP1-206ENST00000553569 ACYP2P14621 99 aa10.2□□□□□ -0.78
TDP1-206ENST00000553569 CRIPTQ9P021 101 aa10.19□□□□□ -0.78
TDP1-206ENST00000553569 Q5VV11 94 aa10.17□□□□□ -0.78
TDP1-206ENST00000553569 KRTAP19-8Q3LI54 63 aa10.15□□□□□ -0.78
TDP1-206ENST00000553569 FCGBPQ9Y6R7 5405 aaPredicted RBP10.15□□□□□ -0.79
TDP1-206ENST00000553569 MT1BP07438 61 aa10.13□□□□□ -0.79
TDP1-206ENST00000553569 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.09□□□□□ -0.79
TDP1-206ENST00000553569 SPANXA2-OT1Q8N9U9 137 aa10.08□□□□□ -0.8
TDP1-206ENST00000553569 CHKB-CPT1BH3BT56 60 aa10.07□□□□□ -0.8
TDP1-206ENST00000553569 COX7CP15954 63 aa10.05□□□□□ -0.8
TDP1-206ENST00000553569 P0C880 135 aa10.04□□□□□ -0.8
TDP1-206ENST00000553569 SPTSSBQ8NFR3 76 aa10.03□□□□□ -0.8
TDP1-206ENST00000553569 R4GN34 69 aa9.95□□□□□ -0.82
TDP1-206ENST00000553569 A6NN06 94 aa9.92□□□□□ -0.82
TDP1-206ENST00000553569 M0QZ58 72 aa9.9□□□□□ -0.82
TDP1-206ENST00000553569 ANAPC13Q9BS18 74 aa9.88□□□□□ -0.83
TDP1-206ENST00000553569 CYSTM1Q9H1C7 97 aa9.88□□□□□ -0.83
TDP1-206ENST00000553569 KRTAP9-7A8MTY7 169 aa9.87□□□□□ -0.83
TDP1-206ENST00000553569 H7BZZ5 65 aa9.83□□□□□ -0.84
TDP1-206ENST00000553569 KRTAP10-5P60370 271 aa9.83□□□□□ -0.84
TDP1-206ENST00000553569 COA5Q86WW8 74 aa9.83□□□□□ -0.84
TDP1-206ENST00000553569 LINC01554Q52M75 96 aa9.76□□□□□ -0.85
TDP1-206ENST00000553569 PLAC4Q8WY50 150 aa9.74□□□□□ -0.85
TDP1-206ENST00000553569 MACF1Q9UPN3 7388 aaKnown RBP9.72□□□□□ -0.85
TDP1-206ENST00000553569 CCDC179H3BU77 68 aa9.69□□□□□ -0.86
TDP1-206ENST00000553569 PRO2289Q9P1D8 64 aa9.59□□□□□ -0.87
TDP1-206ENST00000553569 MT1XP80297 61 aa9.58□□□□□ -0.88
TDP1-206ENST00000553569 SEC61GP60059 68 aa9.54□□□□□ -0.88
TDP1-206ENST00000553569 SYNE2Q8WXH0 6885 aaKnown RBP9.51□□□□□ -0.89
TDP1-206ENST00000553569 KRTAP13-4Q3LI77 160 aa9.51□□□□□ -0.89
TDP1-206ENST00000553569 SERP1Q9Y6X1 66 aa9.51□□□□□ -0.89
TDP1-206ENST00000553569 KRTAP6-3Q3LI67 103 aa9.5□□□□□ -0.89
TDP1-206ENST00000553569 ATP5EP56381 51 aaPredicted RBP9.45□□□□□ -0.9
TDP1-206ENST00000553569 A0A1B0GU33 70 aa9.33□□□□□ -0.92
TDP1-206ENST00000553569 A0A1B0GU69 56 aa9.32□□□□□ -0.92
TDP1-206ENST00000553569 TMEM258P61165 79 aa9.32□□□□□ -0.92
TDP1-206ENST00000553569 SPATA8Q6RVD6 105 aa9.31□□□□□ -0.92
TDP1-206ENST00000553569 A0A0D9SG42 100 aa9.29□□□□□ -0.92
TDP1-206ENST00000553569 KRTAP12-2P59991 146 aa9.25□□□□□ -0.93
TDP1-206ENST00000553569 CAMK2N1Q7Z7J9 78 aa9.21□□□□□ -0.94
TDP1-206ENST00000553569 KRTAP5-9P26371 169 aa9.19□□□□□ -0.94
TDP1-206ENST00000553569 KRTAP10-7P60409 375 aaPredicted RBP9.17□□□□□ -0.94
TDP1-206ENST00000553569 KMT2DO14686 5537 aa9.15□□□□□ -0.95
TDP1-206ENST00000553569 SPINT4Q6UDR6 99 aa9.12□□□□□ -0.95
TDP1-206ENST00000553569 KRTAP8-1Q8IUC2 63 aa9.12□□□□□ -0.95
TDP1-206ENST00000553569 PRR15LQ9BU68 103 aa9.12□□□□□ -0.95
TDP1-206ENST00000553569 LINC01558Q9Y6Z2 57 aa9.09□□□□□ -0.95
TDP1-206ENST00000553569 SMIM26A0A096LP01 95 aa9.07□□□□□ -0.96
TDP1-206ENST00000553569 KRTAP4-8A0A0G2JLE6 195 aa9.07□□□□□ -0.96
TDP1-206ENST00000553569 KRTAP10-12P60413 245 aa9.07□□□□□ -0.96
TDP1-206ENST00000553569 KRTAP4-8Q9BYQ9 185 aa9.07□□□□□ -0.96
TDP1-206ENST00000553569 KRTAP12-1P59990 96 aa9.06□□□□□ -0.96
TDP1-206ENST00000553569 SPRR2FQ96RM1 72 aa9.06□□□□□ -0.96
TDP1-206ENST00000553569 MUC12Q9UKN1 5478 aa9.04□□□□□ -0.96
TDP1-206ENST00000553569 A8MU10 97 aa9.03□□□□□ -0.96
TDP1-206ENST00000553569 NEBP20929 6669 aa8.94□□□□□ -0.98
TDP1-206ENST00000553569 SPRR2EP22531 72 aa8.86□□□□□ -0.99
TDP1-206ENST00000553569 SPRR2BP35325 72 aa8.86□□□□□ -0.99
TDP1-206ENST00000553569 SPRR2AP35326 72 aa8.86□□□□□ -0.99
TDP1-206ENST00000553569 MDN1Q9NU22 5596 aa8.82□□□□□ -1
TDP1-206ENST00000553569 UQCR11O14957 56 aa8.81□□□□□ -1
TDP1-206ENST00000553569 LCE1AQ5T7P2 110 aa8.74□□□□□ -1.01
TDP1-206ENST00000553569 V9GYY9 64 aa8.74□□□□□ -1.01
TDP1-206ENST00000553569 PCP4P48539 62 aa8.73□□□□□ -1.01
TDP1-206ENST00000553569 PSPHP1O15172 72 aa8.7□□□□□ -1.02
TDP1-206ENST00000553569 KRTAP20-1Q3LI63 56 aa8.7□□□□□ -1.02
TDP1-206ENST00000553569 Q1T7F1 81 aa8.68□□□□□ -1.02
TDP1-206ENST00000553569 MIR22HGQ0VDD5 57 aa8.66□□□□□ -1.02
TDP1-206ENST00000553569 C10orf95Q9H7T3 257 aa8.64□□□□□ -1.03
TDP1-206ENST00000553569 TNP1P09430 55 aa8.55□□□□□ -1.04
TDP1-206ENST00000553569 SPRR2DP22532 72 aa8.55□□□□□ -1.04
TDP1-206ENST00000553569 KRTAP19-7Q3SYF9 63 aa8.55□□□□□ -1.04
TDP1-206ENST00000553569 KRTAP2-3P0C7H8 128 aa8.52□□□□□ -1.05
TDP1-206ENST00000553569 KRTAP2-4Q9BYR9 128 aa8.52□□□□□ -1.05
TDP1-206ENST00000553569 MT1EP04732 61 aa8.47□□□□□ -1.05
TDP1-206ENST00000553569 RPS28P62857 69 aaKnown RBP8.47□□□□□ -1.05
TDP1-206ENST00000553569 KRTAP19-5Q3LI72 72 aa8.45□□□□□ -1.06
TDP1-206ENST00000553569 K7ERS5 55 aa8.44□□□□□ -1.06
TDP1-206ENST00000553569 A6NED7 52 aa8.42□□□□□ -1.06
TDP1-206ENST00000553569 LCE3AQ5TA76 89 aa8.42□□□□□ -1.06
TDP1-206ENST00000553569 KRTAP19-3Q7Z4W3 81 aa8.33□□□□□ -1.08
TDP1-206ENST00000553569 LCE5AQ5TCM9 118 aa8.29□□□□□ -1.08
TDP1-206ENST00000553569 LCE3BQ5TA77 95 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms