RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ANAPC11Q9NYG5 84 aa4.41□□□□□ -1.7
LIMA1-216ENST00000552909 KRTAP1-4P0C5Y4 121 aa4.4□□□□□ -1.7
LIMA1-216ENST00000552909 ZNF706Q9Y5V0 76 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-216ENST00000552909 UBR4Q5T4S7 5183 aa4.4□□□□□ -1.71
LIMA1-216ENST00000552909 LRP2P98164 4655 aa4.38□□□□□ -1.71
LIMA1-216ENST00000552909 LINC00483Q53H64 154 aa4.38□□□□□ -1.71
LIMA1-216ENST00000552909 LPAP08519 4548 aa4.35□□□□□ -1.71
LIMA1-216ENST00000552909 IGKV2-30P06310 120 aa4.33□□□□□ -1.72
LIMA1-216ENST00000552909 KRTAP13-2Q52LG2 175 aa4.32□□□□□ -1.72
LIMA1-216ENST00000552909 RNF213Q63HN8 5207 aa4.31□□□□□ -1.72
LIMA1-216ENST00000552909 ROMO1P60602 79 aa4.3□□□□□ -1.72
LIMA1-216ENST00000552909 KRTAP25-1Q3LHN0 102 aa4.3□□□□□ -1.72
LIMA1-216ENST00000552909 SSBP3-AS1Q7Z2R9 100 aa4.3□□□□□ -1.72
LIMA1-216ENST00000552909 TYMSOSQ8TAI1 123 aa4.29□□□□□ -1.72
LIMA1-216ENST00000552909 A8MUU9 505 aa4.27□□□□□ -1.73
LIMA1-216ENST00000552909 LCE2BO14633 110 aa4.26□□□□□ -1.73
LIMA1-216ENST00000552909 IGKV2D-30A0A075B6S6 120 aa4.24□□□□□ -1.73
LIMA1-216ENST00000552909 LINC00304Q8N9R0 145 aa4.24□□□□□ -1.73
LIMA1-216ENST00000552909 MUC2Q02817 5179 aa4.23□□□□□ -1.73
LIMA1-216ENST00000552909 SPINK1P00995 79 aa4.23□□□□□ -1.73
LIMA1-216ENST00000552909 H0YAA0 97 aa4.21□□□□□ -1.73
LIMA1-216ENST00000552909 LOC100996750A0A140TA64 210 aa4.19□□□□□ -1.74
LIMA1-216ENST00000552909 KRTAP16-1A8MUX0 517 aa4.19□□□□□ -1.74
LIMA1-216ENST00000552909 KRTAP4-6Q9BYQ5 205 aa4.19□□□□□ -1.74
LIMA1-216ENST00000552909 P0C880 135 aa4.16□□□□□ -1.74
LIMA1-216ENST00000552909 A0A1B0GU33 70 aa4.16□□□□□ -1.74
LIMA1-216ENST00000552909 RPS29P62273 56 aaKnown RBP4.14□□□□□ -1.75
LIMA1-216ENST00000552909 K7ERS5 55 aa4.14□□□□□ -1.75
LIMA1-216ENST00000552909 H1FX-AS1Q4G0G2 97 aa4.13□□□□□ -1.75
LIMA1-216ENST00000552909 CRIPTQ9P021 101 aa4.13□□□□□ -1.75
LIMA1-216ENST00000552909 TPRXLQ17RH7 258 aa4.1□□□□□ -1.75
LIMA1-216ENST00000552909 MUC17Q685J3 4493 aa4.09□□□□□ -1.75
LIMA1-216ENST00000552909 SPINT4Q6UDR6 99 aa4.07□□□□□ -1.76
LIMA1-216ENST00000552909 LCE2AQ5TA79 106 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-216ENST00000552909 C9orf92A6NGG3 77 aa4.04□□□□□ -1.76
LIMA1-216ENST00000552909 FAT4Q6V0I7 4981 aa4.04□□□□□ -1.76
LIMA1-216ENST00000552909 COX6B2Q6YFQ2 88 aa4.03□□□□□ -1.76
LIMA1-216ENST00000552909 NDUFAF8A1L188 74 aa4.01□□□□□ -1.77
LIMA1-216ENST00000552909 C20orf166-AS1Q96NR2 134 aa4□□□□□ -1.77
LIMA1-216ENST00000552909 KRTAP3-1Q9BYR8 98 aa4□□□□□ -1.77
LIMA1-216ENST00000552909 KRTAP4-1Q9BYQ7 146 aa3.99□□□□□ -1.77
LIMA1-216ENST00000552909 RPL37P61927 97 aaKnown RBP3.99□□□□□ -1.77
LIMA1-216ENST00000552909 KRTAP15-1Q3LI76 137 aa3.99□□□□□ -1.77
LIMA1-216ENST00000552909 SEC61BP60468 96 aaKnown RBP3.96□□□□□ -1.78
LIMA1-216ENST00000552909 C10orf95Q9H7T3 257 aa3.93□□□□□ -1.78
LIMA1-216ENST00000552909 A0A0D9SG42 100 aa3.92□□□□□ -1.78
LIMA1-216ENST00000552909 HMCN1Q96RW7 5635 aa3.91□□□□□ -1.78
LIMA1-216ENST00000552909 A0A0A0MQY5 61 aa3.9□□□□□ -1.79
LIMA1-216ENST00000552909 KRTAP13-4Q3LI77 160 aa3.89□□□□□ -1.79
LIMA1-216ENST00000552909 KRTAP10-6P60371 365 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-216ENST00000552909 KRTAP19-2Q3LHN2 52 aa3.87□□□□□ -1.79
LIMA1-216ENST00000552909 LCE2CQ5TA81 110 aa3.86□□□□□ -1.79
LIMA1-216ENST00000552909 KRTAP9-8Q9BYQ0 159 aa3.85□□□□□ -1.79
LIMA1-216ENST00000552909 S4R3F8 94 aa3.85□□□□□ -1.79
LIMA1-216ENST00000552909 FLGP20930 4061 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-216ENST00000552909 KRTAP12-2P59991 146 aa3.8□□□□□ -1.8
LIMA1-216ENST00000552909 MT1HP80294 61 aa3.79□□□□□ -1.8
LIMA1-216ENST00000552909 LUZP6Q538Z0 58 aa3.78□□□□□ -1.81
LIMA1-216ENST00000552909 LORP23490 312 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-216ENST00000552909 KRTAP4-8Q9BYQ9 185 aa3.76□□□□□ -1.81
LIMA1-216ENST00000552909 KRTAP12-1P59990 96 aa3.75□□□□□ -1.81
LIMA1-216ENST00000552909 KRTAP9-2Q9BYQ4 174 aa3.73□□□□□ -1.81
LIMA1-216ENST00000552909 M0R2T5 61 aa3.7□□□□□ -1.82
LIMA1-216ENST00000552909 FSIP2Q5CZC0 6907 aa3.7□□□□□ -1.82
LIMA1-216ENST00000552909 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-216ENST00000552909 PLAC4Q8WY50 150 aa3.68□□□□□ -1.82
LIMA1-216ENST00000552909 KRTAP9-6A0A140TA67 174 aa3.67□□□□□ -1.82
LIMA1-216ENST00000552909 M0QZ58 72 aa3.67□□□□□ -1.82
LIMA1-216ENST00000552909 LCE3BQ5TA77 95 aa3.59□□□□□ -1.84
LIMA1-216ENST00000552909 USH2AO75445 5202 aa3.57□□□□□ -1.84
LIMA1-216ENST00000552909 MT2AP02795 61 aa3.55□□□□□ -1.84
LIMA1-216ENST00000552909 MT1FP04733 61 aa3.53□□□□□ -1.84
LIMA1-216ENST00000552909 CRCT1Q9UGL9 99 aa3.52□□□□□ -1.85
LIMA1-216ENST00000552909 KRTAP5-3Q6L8H2 238 aa3.51□□□□□ -1.85
LIMA1-216ENST00000552909 PP632Q6XCG6 107 aa3.51□□□□□ -1.85
LIMA1-216ENST00000552909 R4GN34 69 aa3.51□□□□□ -1.85
LIMA1-216ENST00000552909 SSPOA2VEC9 5147 aa3.51□□□□□ -1.85
LIMA1-216ENST00000552909 KRTAP10-10P60014 251 aa3.51□□□□□ -1.85
LIMA1-216ENST00000552909 KRTAP4-8A0A0G2JLE6 195 aa3.5□□□□□ -1.85
LIMA1-216ENST00000552909 KRTAP4-12Q9BQ66 201 aa3.49□□□□□ -1.85
LIMA1-216ENST00000552909 KRTAP9-9Q9BYP9 154 aa3.49□□□□□ -1.85
LIMA1-216ENST00000552909 KRTAP9-4Q9BYQ2 154 aa3.49□□□□□ -1.85
LIMA1-216ENST00000552909 KRTAP9-3Q9BYQ3 159 aa3.49□□□□□ -1.85
LIMA1-216ENST00000552909 FCGBPQ9Y6R7 5405 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-216ENST00000552909 KRTAP4-7Q9BYR0 210 aa3.4□□□□□ -1.87
LIMA1-216ENST00000552909 CAMK2N1Q7Z7J9 78 aa3.38□□□□□ -1.87
LIMA1-216ENST00000552909 SPRR5A0A1B0GTR4 108 aa3.36□□□□□ -1.87
LIMA1-216ENST00000552909 KRTAP19-1Q8IUB9 90 aa3.36□□□□□ -1.87
LIMA1-216ENST00000552909 LCE1DQ5T752 114 aa3.35□□□□□ -1.87
LIMA1-216ENST00000552909 PRO2289Q9P1D8 64 aa3.32□□□□□ -1.88
LIMA1-216ENST00000552909 KRTAP23-1A1A580 65 aa3.3□□□□□ -1.88
LIMA1-216ENST00000552909 KRTAP19-6Q3LI70 58 aa3.3□□□□□ -1.88
LIMA1-216ENST00000552909 TNP1P09430 55 aa3.29□□□□□ -1.88
LIMA1-216ENST00000552909 SPRR2GQ9BYE4 73 aa3.28□□□□□ -1.88
LIMA1-216ENST00000552909 MACF1Q9UPN3 7388 aaKnown RBP3.27□□□□□ -1.89
LIMA1-216ENST00000552909 MT1BP07438 61 aa3.27□□□□□ -1.89
LIMA1-216ENST00000552909 KRTAP4-9Q9BYQ8 210 aa3.27□□□□□ -1.89
LIMA1-216ENST00000552909 SYNE2Q8WXH0 6885 aaKnown RBP3.26□□□□□ -1.89
LIMA1-216ENST00000552909 KRTAP19-8Q3LI54 63 aa3.25□□□□□ -1.89
LIMA1-216ENST00000552909 KRTAP4-2Q9BYR5 136 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms