RNA–Protein interactions for RNA: ENST00000548421.2

BRF1-213, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 1 (best) BASIC

Gene BRF1, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-213ENST00000548421 LCA10Q71F78 164 aa14.05□□□□□ -0.16
BRF1-213ENST00000548421 COA5Q86WW8 74 aa13.95□□□□□ -0.18
BRF1-213ENST00000548421 CHKB-CPT1BH3BT56 60 aa13.94□□□□□ -0.18
BRF1-213ENST00000548421 M0R2T5 61 aa13.94□□□□□ -0.18
BRF1-213ENST00000548421 KRTAP3-3Q9BYR6 98 aa13.94□□□□□ -0.18
BRF1-213ENST00000548421 LCE2AQ5TA79 106 aaPredicted RBP13.92□□□□□ -0.18
BRF1-213ENST00000548421 CSAG1Q6PB30 78 aa13.86□□□□□ -0.19
BRF1-213ENST00000548421 SPTSSBQ8NFR3 76 aa13.8□□□□□ -0.2
BRF1-213ENST00000548421 SERP1Q9Y6X1 66 aa13.73□□□□□ -0.21
BRF1-213ENST00000548421 KRTAP9-2Q9BYQ4 174 aa13.68□□□□□ -0.22
BRF1-213ENST00000548421 KRTAP10-6P60371 365 aaPredicted RBP13.66□□□□□ -0.22
BRF1-213ENST00000548421 LORP23490 312 aaPredicted RBP13.59□□□□□ -0.23
BRF1-213ENST00000548421 H0YAA0 97 aa13.51□□□□□ -0.25
BRF1-213ENST00000548421 KRTAP9-8Q9BYQ0 159 aa13.49□□□□□ -0.25
BRF1-213ENST00000548421 RPS28P62857 69 aaKnown RBP13.46□□□□□ -0.25
BRF1-213ENST00000548421 MT2AP02795 61 aa13.42□□□□□ -0.26
BRF1-213ENST00000548421 ADM2Q7Z4H4 148 aa13.42□□□□□ -0.26
BRF1-213ENST00000548421 MT1FP04733 61 aa13.33□□□□□ -0.28
BRF1-213ENST00000548421 KRTAP3-2Q9BYR7 98 aa13.32□□□□□ -0.28
BRF1-213ENST00000548421 KRTAP10-10P60014 251 aa13.3□□□□□ -0.28
BRF1-213ENST00000548421 SEC61GP60059 68 aa13.29□□□□□ -0.28
BRF1-213ENST00000548421 SMIM26A0A096LP01 95 aa13.29□□□□□ -0.28
BRF1-213ENST00000548421 KRTAP9-6A0A140TA67 174 aa13.26□□□□□ -0.29
BRF1-213ENST00000548421 P0C880 135 aa13.26□□□□□ -0.29
BRF1-213ENST00000548421 LINC01558Q9Y6Z2 57 aa13.26□□□□□ -0.29
BRF1-213ENST00000548421 A0A1B0GU69 56 aa13.22□□□□□ -0.29
BRF1-213ENST00000548421 LCE2DQ5TA82 110 aaPredicted RBP13.2□□□□□ -0.3
BRF1-213ENST00000548421 V9GYY9 64 aa13.17□□□□□ -0.3
BRF1-213ENST00000548421 Q1T7F1 81 aa13.16□□□□□ -0.3
BRF1-213ENST00000548421 PRR15LQ9BU68 103 aa13.14□□□□□ -0.31
BRF1-213ENST00000548421 CRIPTQ9P021 101 aa13.11□□□□□ -0.31
BRF1-213ENST00000548421 KRTAP9-3Q9BYQ3 159 aa13.04□□□□□ -0.32
BRF1-213ENST00000548421 R4GN34 69 aa13□□□□□ -0.33
BRF1-213ENST00000548421 FSIP2Q5CZC0 6907 aa12.97□□□□□ -0.33
BRF1-213ENST00000548421 A0A1B0GU33 70 aa12.97□□□□□ -0.33
BRF1-213ENST00000548421 M0QZ58 72 aa12.95□□□□□ -0.34
BRF1-213ENST00000548421 PSPHP1O15172 72 aa12.94□□□□□ -0.34
BRF1-213ENST00000548421 SPRR2GQ9BYE4 73 aa12.92□□□□□ -0.34
BRF1-213ENST00000548421 CRCT1Q9UGL9 99 aa12.92□□□□□ -0.34
BRF1-213ENST00000548421 KRTAP19-1Q8IUB9 90 aa12.91□□□□□ -0.34
BRF1-213ENST00000548421 KRTAP13-4Q3LI77 160 aa12.83□□□□□ -0.36
BRF1-213ENST00000548421 Q5VV11 94 aa12.83□□□□□ -0.36
BRF1-213ENST00000548421 SPATA8Q6RVD6 105 aa12.76□□□□□ -0.37
BRF1-213ENST00000548421 LCE2BO14633 110 aa12.74□□□□□ -0.37
BRF1-213ENST00000548421 UQCR11O14957 56 aa12.73□□□□□ -0.37
BRF1-213ENST00000548421 LINC01554Q52M75 96 aa12.71□□□□□ -0.38
BRF1-213ENST00000548421 KRTAP19-8Q3LI54 63 aa12.65□□□□□ -0.38
BRF1-213ENST00000548421 A6NED7 52 aa12.57□□□□□ -0.4
BRF1-213ENST00000548421 A0A0D9SG42 100 aa12.56□□□□□ -0.4
BRF1-213ENST00000548421 MIR22HGQ0VDD5 57 aa12.54□□□□□ -0.4
BRF1-213ENST00000548421 USH2AO75445 5202 aa12.52□□□□□ -0.4
BRF1-213ENST00000548421 MT1BP07438 61 aa12.51□□□□□ -0.41
BRF1-213ENST00000548421 A8MU10 97 aa12.5□□□□□ -0.41
BRF1-213ENST00000548421 A6NN06 94 aa12.49□□□□□ -0.41
BRF1-213ENST00000548421 PLAC4Q8WY50 150 aa12.41□□□□□ -0.42
BRF1-213ENST00000548421 KRTAP12-1P59990 96 aa12.33□□□□□ -0.44
BRF1-213ENST00000548421 SPINT4Q6UDR6 99 aa12.31□□□□□ -0.44
BRF1-213ENST00000548421 KRTAP12-2P59991 146 aa12.27□□□□□ -0.45
BRF1-213ENST00000548421 CDC42SE1Q9NRR8 79 aa12.27□□□□□ -0.45
BRF1-213ENST00000548421 SSPOA2VEC9 5147 aa12.21□□□□□ -0.46
BRF1-213ENST00000548421 KRTAP19-6Q3LI70 58 aa12.11□□□□□ -0.47
BRF1-213ENST00000548421 CAMK2N1Q7Z7J9 78 aa12.11□□□□□ -0.47
BRF1-213ENST00000548421 K7ERS5 55 aa12.09□□□□□ -0.47
BRF1-213ENST00000548421 BRK1Q8WUW1 75 aa12.06□□□□□ -0.48
BRF1-213ENST00000548421 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.02□□□□□ -0.48
BRF1-213ENST00000548421 MT1XP80297 61 aa12.01□□□□□ -0.49
BRF1-213ENST00000548421 KRTAP10-5P60370 271 aa12□□□□□ -0.49
BRF1-213ENST00000548421 PRO2289Q9P1D8 64 aa11.99□□□□□ -0.49
BRF1-213ENST00000548421 FCGBPQ9Y6R7 5405 aaPredicted RBP11.91□□□□□ -0.5
BRF1-213ENST00000548421 KRTAP9-7A8MTY7 169 aa11.91□□□□□ -0.5
BRF1-213ENST00000548421 C10orf95Q9H7T3 257 aa11.68□□□□□ -0.54
BRF1-213ENST00000548421 MACF1Q9UPN3 7388 aaKnown RBP11.62□□□□□ -0.55
BRF1-213ENST00000548421 PRO0628Q9UI54 55 aa11.53□□□□□ -0.56
BRF1-213ENST00000548421 KRTAP10-7P60409 375 aaPredicted RBP11.49□□□□□ -0.57
BRF1-213ENST00000548421 ROMO1P60602 79 aa11.49□□□□□ -0.57
BRF1-213ENST00000548421 SYNE2Q8WXH0 6885 aaKnown RBP11.47□□□□□ -0.57
BRF1-213ENST00000548421 TNP1P09430 55 aa11.44□□□□□ -0.58
BRF1-213ENST00000548421 KRTAP10-12P60413 245 aa11.4□□□□□ -0.58
BRF1-213ENST00000548421 PMAIP1Q13794 54 aa11.38□□□□□ -0.59
BRF1-213ENST00000548421 KRTAP25-1Q3LHN0 102 aa11.33□□□□□ -0.6
BRF1-213ENST00000548421 KRTAP6-3Q3LI67 103 aa11.2□□□□□ -0.62
BRF1-213ENST00000548421 KMT2DO14686 5537 aa11.19□□□□□ -0.62
BRF1-213ENST00000548421 KRTAP4-8A0A0G2JLE6 195 aa11.14□□□□□ -0.63
BRF1-213ENST00000548421 KRTAP4-8Q9BYQ9 185 aa11.14□□□□□ -0.63
BRF1-213ENST00000548421 LCE3AQ5TA76 89 aa11.03□□□□□ -0.64
BRF1-213ENST00000548421 KRTAP8-1Q8IUC2 63 aa11.01□□□□□ -0.65
BRF1-213ENST00000548421 KRTAP23-1A1A580 65 aa10.95□□□□□ -0.66
BRF1-213ENST00000548421 PP632Q6XCG6 107 aa10.85□□□□□ -0.67
BRF1-213ENST00000548421 KTN1-AS1Q86SY8 53 aa10.76□□□□□ -0.69
BRF1-213ENST00000548421 KRTAP5-9P26371 169 aa10.74□□□□□ -0.69
BRF1-213ENST00000548421 NEBP20929 6669 aa10.74□□□□□ -0.69
BRF1-213ENST00000548421 MUC12Q9UKN1 5478 aa10.74□□□□□ -0.69
BRF1-213ENST00000548421 KRTAP19-5Q3LI72 72 aa10.74□□□□□ -0.69
BRF1-213ENST00000548421 KRTAP19-7Q3SYF9 63 aa10.71□□□□□ -0.69
BRF1-213ENST00000548421 SPRR2FQ96RM1 72 aa10.7□□□□□ -0.7
BRF1-213ENST00000548421 PRAC1Q96KF2 57 aa10.69□□□□□ -0.7
BRF1-213ENST00000548421 KRTAP12-3P60328 96 aa10.61□□□□□ -0.71
BRF1-213ENST00000548421 MT1EP04732 61 aa10.56□□□□□ -0.72
BRF1-213ENST00000548421 KRTAP20-1Q3LI63 56 aa10.45□□□□□ -0.74
BRF1-213ENST00000548421 MDN1Q9NU22 5596 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms