RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 KRTAP9-2Q9BYQ4 174 aa6.56□□□□□ -1.36
PTCH1-213ENST00000546820 MT2AP02795 61 aa6.55□□□□□ -1.36
PTCH1-213ENST00000546820 KRTAP10-10P60014 251 aa6.55□□□□□ -1.36
PTCH1-213ENST00000546820 C20orf197Q8N268 126 aa6.54□□□□□ -1.36
PTCH1-213ENST00000546820 SNURFQ9Y675 71 aa6.54□□□□□ -1.36
PTCH1-213ENST00000546820 NDUFC1O43677 76 aa6.53□□□□□ -1.36
PTCH1-213ENST00000546820 DMAC1Q96GE9 116 aa6.51□□□□□ -1.37
PTCH1-213ENST00000546820 COX7CP15954 63 aa6.5□□□□□ -1.37
PTCH1-213ENST00000546820 MT1FP04733 61 aa6.49□□□□□ -1.37
PTCH1-213ENST00000546820 ACYP2P14621 99 aa6.48□□□□□ -1.37
PTCH1-213ENST00000546820 ANAPC13Q9BS18 74 aa6.45□□□□□ -1.38
PTCH1-213ENST00000546820 SPANXA2-OT1Q8N9U9 137 aa6.44□□□□□ -1.38
PTCH1-213ENST00000546820 KRTAP9-3Q9BYQ3 159 aa6.4□□□□□ -1.38
PTCH1-213ENST00000546820 H0YAA0 97 aa6.37□□□□□ -1.39
PTCH1-213ENST00000546820 SPTSSBQ8NFR3 76 aa6.37□□□□□ -1.39
PTCH1-213ENST00000546820 CHKB-CPT1BH3BT56 60 aa6.36□□□□□ -1.39
PTCH1-213ENST00000546820 H7BZZ5 65 aa6.31□□□□□ -1.4
PTCH1-213ENST00000546820 ADM2Q7Z4H4 148 aa6.3□□□□□ -1.4
PTCH1-213ENST00000546820 CRIPTQ9P021 101 aa6.29□□□□□ -1.4
PTCH1-213ENST00000546820 CRCT1Q9UGL9 99 aa6.28□□□□□ -1.4
PTCH1-213ENST00000546820 CCDC179H3BU77 68 aa6.26□□□□□ -1.41
PTCH1-213ENST00000546820 CYSTM1Q9H1C7 97 aa6.26□□□□□ -1.41
PTCH1-213ENST00000546820 KRTAP9-6A0A140TA67 174 aa6.25□□□□□ -1.41
PTCH1-213ENST00000546820 H3BS24 57 aa6.23□□□□□ -1.41
PTCH1-213ENST00000546820 COA5Q86WW8 74 aa6.22□□□□□ -1.41
PTCH1-213ENST00000546820 KRTAP19-1Q8IUB9 90 aa6.21□□□□□ -1.42
PTCH1-213ENST00000546820 SPRR2GQ9BYE4 73 aa6.21□□□□□ -1.42
PTCH1-213ENST00000546820 KRTAP4-8Q9BYQ9 185 aa6.21□□□□□ -1.42
PTCH1-213ENST00000546820 FSIP2Q5CZC0 6907 aa6.19□□□□□ -1.42
PTCH1-213ENST00000546820 ATP5EP56381 51 aaPredicted RBP6.16□□□□□ -1.42
PTCH1-213ENST00000546820 P0C880 135 aa6.15□□□□□ -1.42
PTCH1-213ENST00000546820 R4GN34 69 aa6.14□□□□□ -1.43
PTCH1-213ENST00000546820 Q5VV11 94 aa6.13□□□□□ -1.43
PTCH1-213ENST00000546820 USH2AO75445 5202 aa6.12□□□□□ -1.43
PTCH1-213ENST00000546820 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.12□□□□□ -1.43
PTCH1-213ENST00000546820 KRTAP19-8Q3LI54 63 aa6.11□□□□□ -1.43
PTCH1-213ENST00000546820 SEC61GP60059 68 aa6.09□□□□□ -1.43
PTCH1-213ENST00000546820 TMEM258P61165 79 aa6.09□□□□□ -1.43
PTCH1-213ENST00000546820 M0QZ58 72 aa6.08□□□□□ -1.44
PTCH1-213ENST00000546820 SERP1Q9Y6X1 66 aa6.06□□□□□ -1.44
PTCH1-213ENST00000546820 KRTAP19-6Q3LI70 58 aa6.05□□□□□ -1.44
PTCH1-213ENST00000546820 MT1BP07438 61 aa6.04□□□□□ -1.44
PTCH1-213ENST00000546820 LINC01554Q52M75 96 aa5.98□□□□□ -1.45
PTCH1-213ENST00000546820 PLAC4Q8WY50 150 aa5.98□□□□□ -1.45
PTCH1-213ENST00000546820 SSPOA2VEC9 5147 aa5.97□□□□□ -1.45
PTCH1-213ENST00000546820 A0A1B0GU69 56 aa5.94□□□□□ -1.46
PTCH1-213ENST00000546820 A6NN06 94 aa5.93□□□□□ -1.46
PTCH1-213ENST00000546820 A0A1B0GU33 70 aa5.91□□□□□ -1.46
PTCH1-213ENST00000546820 PCP4P48539 62 aa5.9□□□□□ -1.46
PTCH1-213ENST00000546820 PRR15LQ9BU68 103 aa5.89□□□□□ -1.47
PTCH1-213ENST00000546820 KRTAP10-5P60370 271 aa5.87□□□□□ -1.47
PTCH1-213ENST00000546820 LCE3BQ5TA77 95 aa5.87□□□□□ -1.47
PTCH1-213ENST00000546820 KRTAP4-12Q9BQ66 201 aa5.87□□□□□ -1.47
PTCH1-213ENST00000546820 FCGBPQ9Y6R7 5405 aaPredicted RBP5.86□□□□□ -1.47
PTCH1-213ENST00000546820 KRTAP13-4Q3LI77 160 aa5.85□□□□□ -1.47
PTCH1-213ENST00000546820 PRO2289Q9P1D8 64 aa5.85□□□□□ -1.47
PTCH1-213ENST00000546820 LINC01558Q9Y6Z2 57 aa5.85□□□□□ -1.47
PTCH1-213ENST00000546820 SPATA8Q6RVD6 105 aa5.8□□□□□ -1.48
PTCH1-213ENST00000546820 KRTAP9-9Q9BYP9 154 aa5.8□□□□□ -1.48
PTCH1-213ENST00000546820 KRTAP9-4Q9BYQ2 154 aa5.8□□□□□ -1.48
PTCH1-213ENST00000546820 SMIM26A0A096LP01 95 aa5.76□□□□□ -1.49
PTCH1-213ENST00000546820 A0A0D9SG42 100 aa5.76□□□□□ -1.49
PTCH1-213ENST00000546820 V9GYY9 64 aa5.75□□□□□ -1.49
PTCH1-213ENST00000546820 MT1XP80297 61 aa5.74□□□□□ -1.49
PTCH1-213ENST00000546820 KRTAP4-8A0A0G2JLE6 195 aa5.73□□□□□ -1.49
PTCH1-213ENST00000546820 KRTAP19-4Q3LI73 84 aa5.71□□□□□ -1.5
PTCH1-213ENST00000546820 RPS28P62857 69 aaKnown RBP5.7□□□□□ -1.5
PTCH1-213ENST00000546820 CAMK2N1Q7Z7J9 78 aa5.7□□□□□ -1.5
PTCH1-213ENST00000546820 SPINT4Q6UDR6 99 aa5.69□□□□□ -1.5
PTCH1-213ENST00000546820 UQCR11O14957 56 aa5.68□□□□□ -1.5
PTCH1-213ENST00000546820 Q1T7F1 81 aa5.68□□□□□ -1.5
PTCH1-213ENST00000546820 KRTAP9-7A8MTY7 169 aa5.66□□□□□ -1.5
PTCH1-213ENST00000546820 KRTAP12-1P59990 96 aa5.63□□□□□ -1.51
PTCH1-213ENST00000546820 A8MU10 97 aa5.62□□□□□ -1.51
PTCH1-213ENST00000546820 PSPHP1O15172 72 aa5.61□□□□□ -1.51
PTCH1-213ENST00000546820 MACF1Q9UPN3 7388 aaKnown RBP5.59□□□□□ -1.51
PTCH1-213ENST00000546820 KRTAP12-2P59991 146 aa5.58□□□□□ -1.52
PTCH1-213ENST00000546820 MIR22HGQ0VDD5 57 aa5.56□□□□□ -1.52
PTCH1-213ENST00000546820 KRTAP6-3Q3LI67 103 aa5.56□□□□□ -1.52
PTCH1-213ENST00000546820 KRTAP4-7Q9BYR0 210 aa5.54□□□□□ -1.52
PTCH1-213ENST00000546820 KRTAP10-7P60409 375 aaPredicted RBP5.49□□□□□ -1.53
PTCH1-213ENST00000546820 LCE1DQ5T752 114 aa5.49□□□□□ -1.53
PTCH1-213ENST00000546820 SYNE2Q8WXH0 6885 aaKnown RBP5.49□□□□□ -1.53
PTCH1-213ENST00000546820 KRTAP10-12P60413 245 aa5.48□□□□□ -1.53
PTCH1-213ENST00000546820 A6NED7 52 aa5.47□□□□□ -1.53
PTCH1-213ENST00000546820 K7ERS5 55 aa5.47□□□□□ -1.53
PTCH1-213ENST00000546820 KRTAP8-1Q8IUC2 63 aa5.44□□□□□ -1.54
PTCH1-213ENST00000546820 KRTAP5-9P26371 169 aa5.4□□□□□ -1.54
PTCH1-213ENST00000546820 KRTAP4-9Q9BYQ8 210 aa5.38□□□□□ -1.55
PTCH1-213ENST00000546820 C10orf95Q9H7T3 257 aa5.35□□□□□ -1.55
PTCH1-213ENST00000546820 TNP1P09430 55 aa5.34□□□□□ -1.55
PTCH1-213ENST00000546820 SPRR2FQ96RM1 72 aa5.34□□□□□ -1.55
PTCH1-213ENST00000546820 KRTAP4-2Q9BYR5 136 aa5.32□□□□□ -1.56
PTCH1-213ENST00000546820 KMT2DO14686 5537 aa5.31□□□□□ -1.56
PTCH1-213ENST00000546820 LCE4AQ5TA78 99 aa5.28□□□□□ -1.56
PTCH1-213ENST00000546820 CDC42SE1Q9NRR8 79 aa5.27□□□□□ -1.57
PTCH1-213ENST00000546820 SPRR2EP22531 72 aa5.19□□□□□ -1.58
PTCH1-213ENST00000546820 SPRR2BP35325 72 aa5.19□□□□□ -1.58
PTCH1-213ENST00000546820 SPRR2AP35326 72 aa5.19□□□□□ -1.58
PTCH1-213ENST00000546820 KRTAP25-1Q3LHN0 102 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms