RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 MT2AP02795 61 aa3□□□□□ -1.93
LTBR-212ENST00000543542 KRTAP9-2Q9BYQ4 174 aa3□□□□□ -1.93
LTBR-212ENST00000543542 ACYP2P14621 99 aa2.99□□□□□ -1.93
LTBR-212ENST00000543542 LCE2DQ5TA82 110 aaPredicted RBP2.99□□□□□ -1.93
LTBR-212ENST00000543542 DMAC1Q96GE9 116 aa2.99□□□□□ -1.93
LTBR-212ENST00000543542 CHKB-CPT1BH3BT56 60 aa2.98□□□□□ -1.93
LTBR-212ENST00000543542 MT1FP04733 61 aa2.98□□□□□ -1.93
LTBR-212ENST00000543542 KRTAP3-3Q9BYR6 98 aa2.97□□□□□ -1.93
LTBR-212ENST00000543542 SPTSSBQ8NFR3 76 aa2.96□□□□□ -1.94
LTBR-212ENST00000543542 SPANXA2-OT1Q8N9U9 137 aa2.95□□□□□ -1.94
LTBR-212ENST00000543542 KRTAP9-6A0A140TA67 174 aa2.94□□□□□ -1.94
LTBR-212ENST00000543542 CCDC179H3BU77 68 aa2.92□□□□□ -1.94
LTBR-212ENST00000543542 ADM2Q7Z4H4 148 aa2.92□□□□□ -1.94
LTBR-212ENST00000543542 H7BZZ5 65 aa2.91□□□□□ -1.94
LTBR-212ENST00000543542 KRTAP9-3Q9BYQ3 159 aa2.91□□□□□ -1.94
LTBR-212ENST00000543542 CYSTM1Q9H1C7 97 aa2.9□□□□□ -1.95
LTBR-212ENST00000543542 H0YAA0 97 aa2.89□□□□□ -1.95
LTBR-212ENST00000543542 COA5Q86WW8 74 aa2.89□□□□□ -1.95
LTBR-212ENST00000543542 FSIP2Q5CZC0 6907 aa2.87□□□□□ -1.95
LTBR-212ENST00000543542 LCE2BO14633 110 aa2.87□□□□□ -1.95
LTBR-212ENST00000543542 CRIPTQ9P021 101 aa2.87□□□□□ -1.95
LTBR-212ENST00000543542 CRCT1Q9UGL9 99 aa2.87□□□□□ -1.95
LTBR-212ENST00000543542 USH2AO75445 5202 aa2.86□□□□□ -1.95
LTBR-212ENST00000543542 ATP5EP56381 51 aaPredicted RBP2.85□□□□□ -1.95
LTBR-212ENST00000543542 R4GN34 69 aa2.85□□□□□ -1.95
LTBR-212ENST00000543542 P0C880 135 aa2.84□□□□□ -1.95
LTBR-212ENST00000543542 SEC61GP60059 68 aa2.84□□□□□ -1.95
LTBR-212ENST00000543542 M0QZ58 72 aa2.83□□□□□ -1.96
LTBR-212ENST00000543542 Q5VV11 94 aa2.83□□□□□ -1.96
LTBR-212ENST00000543542 KRTAP19-1Q8IUB9 90 aa2.83□□□□□ -1.96
LTBR-212ENST00000543542 SPRR2GQ9BYE4 73 aa2.83□□□□□ -1.96
LTBR-212ENST00000543542 TMEM258P61165 79 aa2.82□□□□□ -1.96
LTBR-212ENST00000543542 SERP1Q9Y6X1 66 aa2.82□□□□□ -1.96
LTBR-212ENST00000543542 KRTAP3-2Q9BYR7 98 aa2.81□□□□□ -1.96
LTBR-212ENST00000543542 LINC01554Q52M75 96 aa2.8□□□□□ -1.96
LTBR-212ENST00000543542 SSPOA2VEC9 5147 aa2.78□□□□□ -1.96
LTBR-212ENST00000543542 KRTAP19-8Q3LI54 63 aa2.78□□□□□ -1.96
LTBR-212ENST00000543542 A0A1B0GU69 56 aa2.77□□□□□ -1.97
LTBR-212ENST00000543542 PLAC4Q8WY50 150 aa2.77□□□□□ -1.97
LTBR-212ENST00000543542 MT1BP07438 61 aa2.76□□□□□ -1.97
LTBR-212ENST00000543542 PCP4P48539 62 aa2.76□□□□□ -1.97
LTBR-212ENST00000543542 KRTAP19-6Q3LI70 58 aa2.75□□□□□ -1.97
LTBR-212ENST00000543542 PRR15LQ9BU68 103 aa2.75□□□□□ -1.97
LTBR-212ENST00000543542 A0A1B0GU33 70 aa2.73□□□□□ -1.97
LTBR-212ENST00000543542 A6NN06 94 aa2.73□□□□□ -1.97
LTBR-212ENST00000543542 FCGBPQ9Y6R7 5405 aaPredicted RBP2.71□□□□□ -1.98
LTBR-212ENST00000543542 A0A0D9SG42 100 aa2.7□□□□□ -1.98
LTBR-212ENST00000543542 SPATA8Q6RVD6 105 aa2.7□□□□□ -1.98
LTBR-212ENST00000543542 PRO2289Q9P1D8 64 aa2.7□□□□□ -1.98
LTBR-212ENST00000543542 LINC01558Q9Y6Z2 57 aa2.7□□□□□ -1.98
LTBR-212ENST00000543542 KRTAP13-4Q3LI77 160 aa2.69□□□□□ -1.98
LTBR-212ENST00000543542 KRTAP10-5P60370 271 aa2.68□□□□□ -1.98
LTBR-212ENST00000543542 SMIM26A0A096LP01 95 aa2.67□□□□□ -1.98
LTBR-212ENST00000543542 SPINT4Q6UDR6 99 aa2.67□□□□□ -1.98
LTBR-212ENST00000543542 V9GYY9 64 aa2.67□□□□□ -1.98
LTBR-212ENST00000543542 CAMK2N1Q7Z7J9 78 aa2.66□□□□□ -1.98
LTBR-212ENST00000543542 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.65□□□□□ -1.99
LTBR-212ENST00000543542 UQCR11O14957 56 aa2.63□□□□□ -1.99
LTBR-212ENST00000543542 MT1XP80297 61 aa2.63□□□□□ -1.99
LTBR-212ENST00000543542 A8MU10 97 aa2.62□□□□□ -1.99
LTBR-212ENST00000543542 PSPHP1O15172 72 aa2.62□□□□□ -1.99
LTBR-212ENST00000543542 Q1T7F1 81 aa2.62□□□□□ -1.99
LTBR-212ENST00000543542 KRTAP9-7A8MTY7 169 aa2.61□□□□□ -1.99
LTBR-212ENST00000543542 MACF1Q9UPN3 7388 aaKnown RBP2.6□□□□□ -1.99
LTBR-212ENST00000543542 RPS28P62857 69 aaKnown RBP2.6□□□□□ -1.99
LTBR-212ENST00000543542 KRTAP12-1P59990 96 aa2.59□□□□□ -1.99
LTBR-212ENST00000543542 MIR22HGQ0VDD5 57 aa2.59□□□□□ -1.99
LTBR-212ENST00000543542 KRTAP12-2P59991 146 aa2.58□□□□□ -2
LTBR-212ENST00000543542 A6NED7 52 aa2.56□□□□□ -2
LTBR-212ENST00000543542 K7ERS5 55 aa2.55□□□□□ -2
LTBR-212ENST00000543542 SYNE2Q8WXH0 6885 aaKnown RBP2.54□□□□□ -2
LTBR-212ENST00000543542 KRTAP6-3Q3LI67 103 aa2.53□□□□□ -2
LTBR-212ENST00000543542 KRTAP10-7P60409 375 aaPredicted RBP2.52□□□□□ -2.01
LTBR-212ENST00000543542 KRTAP8-1Q8IUC2 63 aa2.51□□□□□ -2.01
LTBR-212ENST00000543542 KMT2DO14686 5537 aa2.49□□□□□ -2.01
LTBR-212ENST00000543542 KRTAP10-12P60413 245 aa2.49□□□□□ -2.01
LTBR-212ENST00000543542 KRTAP4-8A0A0G2JLE6 195 aa2.48□□□□□ -2.01
LTBR-212ENST00000543542 KRTAP4-8Q9BYQ9 185 aa2.48□□□□□ -2.01
LTBR-212ENST00000543542 TNP1P09430 55 aa2.47□□□□□ -2.01
LTBR-212ENST00000543542 SPRR2FQ96RM1 72 aa2.47□□□□□ -2.01
LTBR-212ENST00000543542 C10orf95Q9H7T3 257 aa2.46□□□□□ -2.02
LTBR-212ENST00000543542 CDC42SE1Q9NRR8 79 aa2.45□□□□□ -2.02
LTBR-212ENST00000543542 KRTAP5-9P26371 169 aa2.44□□□□□ -2.02
LTBR-212ENST00000543542 MUC12Q9UKN1 5478 aa2.42□□□□□ -2.02
LTBR-212ENST00000543542 SPRR2EP22531 72 aa2.4□□□□□ -2.03
LTBR-212ENST00000543542 SPRR2BP35325 72 aa2.4□□□□□ -2.03
LTBR-212ENST00000543542 SPRR2AP35326 72 aa2.4□□□□□ -2.03
LTBR-212ENST00000543542 KRTAP25-1Q3LHN0 102 aa2.39□□□□□ -2.03
LTBR-212ENST00000543542 MDN1Q9NU22 5596 aa2.39□□□□□ -2.03
LTBR-212ENST00000543542 LCE3AQ5TA76 89 aa2.38□□□□□ -2.03
LTBR-212ENST00000543542 BRK1Q8WUW1 75 aa2.37□□□□□ -2.03
LTBR-212ENST00000543542 ROMO1P60602 79 aa2.36□□□□□ -2.03
LTBR-212ENST00000543542 KRTAP19-5Q3LI72 72 aa2.35□□□□□ -2.03
LTBR-212ENST00000543542 NEBP20929 6669 aa2.35□□□□□ -2.03
LTBR-212ENST00000543542 LCE1AQ5T7P2 110 aa2.34□□□□□ -2.03
LTBR-212ENST00000543542 SPRR2DP22532 72 aa2.33□□□□□ -2.04
LTBR-212ENST00000543542 KRTAP19-7Q3SYF9 63 aa2.33□□□□□ -2.04
LTBR-212ENST00000543542 MT1EP04732 61 aa2.32□□□□□ -2.04
LTBR-212ENST00000543542 KRTAP20-1Q3LI63 56 aa2.3□□□□□ -2.04
LTBR-212ENST00000543542 KRTAP12-3P60328 96 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms