RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 KRTAP10-6P60371 365 aaPredicted RBP9.22□□□□□ -0.93
TNFRSF1A-213ENST00000540022 S4R3F8 94 aa9.21□□□□□ -0.94
TNFRSF1A-213ENST00000540022 KRTAP9-6A0A140TA67 174 aa9.19□□□□□ -0.94
TNFRSF1A-213ENST00000540022 M0R2T5 61 aa9.19□□□□□ -0.94
TNFRSF1A-213ENST00000540022 ACYP2P14621 99 aa9.18□□□□□ -0.94
TNFRSF1A-213ENST00000540022 LCA10Q71F78 164 aa9.18□□□□□ -0.94
TNFRSF1A-213ENST00000540022 KRTAP3-3Q9BYR6 98 aa9.14□□□□□ -0.95
TNFRSF1A-213ENST00000540022 KRTAP3-2Q9BYR7 98 aa9.13□□□□□ -0.95
TNFRSF1A-213ENST00000540022 TMEM258P61165 79 aa9.08□□□□□ -0.96
TNFRSF1A-213ENST00000540022 FSIP2Q5CZC0 6907 aa9.07□□□□□ -0.96
TNFRSF1A-213ENST00000540022 CSAG1Q6PB30 78 aa9.05□□□□□ -0.96
TNFRSF1A-213ENST00000540022 ATP5EP56381 51 aaPredicted RBP9.04□□□□□ -0.96
TNFRSF1A-213ENST00000540022 COA5Q86WW8 74 aa9.03□□□□□ -0.96
TNFRSF1A-213ENST00000540022 CHKB-CPT1BH3BT56 60 aa9.01□□□□□ -0.97
TNFRSF1A-213ENST00000540022 CRCT1Q9UGL9 99 aa9□□□□□ -0.97
TNFRSF1A-213ENST00000540022 KRTAP9-8Q9BYQ0 159 aa8.97□□□□□ -0.97
TNFRSF1A-213ENST00000540022 SPTSSBQ8NFR3 76 aa8.9□□□□□ -0.98
TNFRSF1A-213ENST00000540022 MT2AP02795 61 aa8.88□□□□□ -0.99
TNFRSF1A-213ENST00000540022 MT1FP04733 61 aa8.83□□□□□ -1
TNFRSF1A-213ENST00000540022 H0YAA0 97 aa8.8□□□□□ -1
TNFRSF1A-213ENST00000540022 SERP1Q9Y6X1 66 aa8.8□□□□□ -1
TNFRSF1A-213ENST00000540022 KRTAP10-10P60014 251 aa8.77□□□□□ -1.01
TNFRSF1A-213ENST00000540022 ADM2Q7Z4H4 148 aa8.76□□□□□ -1.01
TNFRSF1A-213ENST00000540022 USH2AO75445 5202 aa8.74□□□□□ -1.01
TNFRSF1A-213ENST00000540022 SSPOA2VEC9 5147 aa8.67□□□□□ -1.02
TNFRSF1A-213ENST00000540022 P0C880 135 aa8.67□□□□□ -1.02
TNFRSF1A-213ENST00000540022 KRTAP9-3Q9BYQ3 159 aa8.66□□□□□ -1.02
TNFRSF1A-213ENST00000540022 RPS28P62857 69 aaKnown RBP8.6□□□□□ -1.03
TNFRSF1A-213ENST00000540022 LCE2BO14633 110 aa8.59□□□□□ -1.03
TNFRSF1A-213ENST00000540022 SEC61GP60059 68 aa8.58□□□□□ -1.04
TNFRSF1A-213ENST00000540022 LINC01558Q9Y6Z2 57 aa8.55□□□□□ -1.04
TNFRSF1A-213ENST00000540022 CRIPTQ9P021 101 aa8.54□□□□□ -1.04
TNFRSF1A-213ENST00000540022 A0A1B0GU69 56 aa8.54□□□□□ -1.04
TNFRSF1A-213ENST00000540022 KRTAP19-1Q8IUB9 90 aa8.52□□□□□ -1.05
TNFRSF1A-213ENST00000540022 SMIM26A0A096LP01 95 aa8.51□□□□□ -1.05
TNFRSF1A-213ENST00000540022 SPRR2GQ9BYE4 73 aa8.49□□□□□ -1.05
TNFRSF1A-213ENST00000540022 R4GN34 69 aa8.47□□□□□ -1.05
TNFRSF1A-213ENST00000540022 M0QZ58 72 aa8.44□□□□□ -1.06
TNFRSF1A-213ENST00000540022 Q1T7F1 81 aa8.44□□□□□ -1.06
TNFRSF1A-213ENST00000540022 FCGBPQ9Y6R7 5405 aaPredicted RBP8.44□□□□□ -1.06
TNFRSF1A-213ENST00000540022 PRR15LQ9BU68 103 aa8.43□□□□□ -1.06
TNFRSF1A-213ENST00000540022 V9GYY9 64 aa8.42□□□□□ -1.06
TNFRSF1A-213ENST00000540022 A0A1B0GU33 70 aa8.4□□□□□ -1.06
TNFRSF1A-213ENST00000540022 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.39□□□□□ -1.07
TNFRSF1A-213ENST00000540022 KRTAP13-4Q3LI77 160 aa8.39□□□□□ -1.07
TNFRSF1A-213ENST00000540022 PSPHP1O15172 72 aa8.34□□□□□ -1.08
TNFRSF1A-213ENST00000540022 KRTAP19-8Q3LI54 63 aa8.34□□□□□ -1.08
TNFRSF1A-213ENST00000540022 SPATA8Q6RVD6 105 aa8.31□□□□□ -1.08
TNFRSF1A-213ENST00000540022 LINC01554Q52M75 96 aa8.3□□□□□ -1.08
TNFRSF1A-213ENST00000540022 Q5VV11 94 aa8.29□□□□□ -1.08
TNFRSF1A-213ENST00000540022 KRTAP9-7A8MTY7 169 aa8.28□□□□□ -1.08
TNFRSF1A-213ENST00000540022 KRTAP19-6Q3LI70 58 aa8.28□□□□□ -1.08
TNFRSF1A-213ENST00000540022 MT1BP07438 61 aa8.27□□□□□ -1.09
TNFRSF1A-213ENST00000540022 UQCR11O14957 56 aa8.2□□□□□ -1.1
TNFRSF1A-213ENST00000540022 A0A0D9SG42 100 aa8.18□□□□□ -1.1
TNFRSF1A-213ENST00000540022 A8MU10 97 aa8.13□□□□□ -1.11
TNFRSF1A-213ENST00000540022 A6NN06 94 aa8.13□□□□□ -1.11
TNFRSF1A-213ENST00000540022 MACF1Q9UPN3 7388 aaKnown RBP8.13□□□□□ -1.11
TNFRSF1A-213ENST00000540022 PLAC4Q8WY50 150 aa8.1□□□□□ -1.11
TNFRSF1A-213ENST00000540022 MIR22HGQ0VDD5 57 aa8.08□□□□□ -1.12
TNFRSF1A-213ENST00000540022 A6NED7 52 aa8.06□□□□□ -1.12
TNFRSF1A-213ENST00000540022 SYNE2Q8WXH0 6885 aaKnown RBP8.04□□□□□ -1.12
TNFRSF1A-213ENST00000540022 KRTAP12-1P59990 96 aa8.03□□□□□ -1.12
TNFRSF1A-213ENST00000540022 SPINT4Q6UDR6 99 aa8.01□□□□□ -1.13
TNFRSF1A-213ENST00000540022 KRTAP12-2P59991 146 aa7.99□□□□□ -1.13
TNFRSF1A-213ENST00000540022 KRTAP10-5P60370 271 aa7.92□□□□□ -1.14
TNFRSF1A-213ENST00000540022 MT1XP80297 61 aa7.9□□□□□ -1.14
TNFRSF1A-213ENST00000540022 CAMK2N1Q7Z7J9 78 aa7.88□□□□□ -1.15
TNFRSF1A-213ENST00000540022 CDC42SE1Q9NRR8 79 aa7.87□□□□□ -1.15
TNFRSF1A-213ENST00000540022 KRTAP6-3Q3LI67 103 aa7.84□□□□□ -1.15
TNFRSF1A-213ENST00000540022 PRO2289Q9P1D8 64 aa7.83□□□□□ -1.16
TNFRSF1A-213ENST00000540022 K7ERS5 55 aa7.76□□□□□ -1.17
TNFRSF1A-213ENST00000540022 BRK1Q8WUW1 75 aa7.69□□□□□ -1.18
TNFRSF1A-213ENST00000540022 MUC12Q9UKN1 5478 aa7.65□□□□□ -1.19
TNFRSF1A-213ENST00000540022 C10orf95Q9H7T3 257 aa7.62□□□□□ -1.19
TNFRSF1A-213ENST00000540022 KRTAP10-7P60409 375 aaPredicted RBP7.57□□□□□ -1.2
TNFRSF1A-213ENST00000540022 NEBP20929 6669 aa7.52□□□□□ -1.21
TNFRSF1A-213ENST00000540022 KRTAP5-9P26371 169 aa7.52□□□□□ -1.21
TNFRSF1A-213ENST00000540022 KMT2DO14686 5537 aa7.5□□□□□ -1.21
TNFRSF1A-213ENST00000540022 KRTAP10-12P60413 245 aa7.5□□□□□ -1.21
TNFRSF1A-213ENST00000540022 TNP1P09430 55 aa7.43□□□□□ -1.22
TNFRSF1A-213ENST00000540022 ROMO1P60602 79 aa7.4□□□□□ -1.22
TNFRSF1A-213ENST00000540022 MDN1Q9NU22 5596 aa7.4□□□□□ -1.23
TNFRSF1A-213ENST00000540022 KRTAP4-8A0A0G2JLE6 195 aa7.39□□□□□ -1.23
TNFRSF1A-213ENST00000540022 KRTAP4-8Q9BYQ9 185 aa7.39□□□□□ -1.23
TNFRSF1A-213ENST00000540022 SVIPQ8NHG7 77 aa7.37□□□□□ -1.23
TNFRSF1A-213ENST00000540022 KRTAP25-1Q3LHN0 102 aa7.33□□□□□ -1.24
TNFRSF1A-213ENST00000540022 PRO0628Q9UI54 55 aa7.31□□□□□ -1.24
TNFRSF1A-213ENST00000540022 SPRR2FQ96RM1 72 aa7.27□□□□□ -1.25
TNFRSF1A-213ENST00000540022 PMAIP1Q13794 54 aa7.26□□□□□ -1.25
TNFRSF1A-213ENST00000540022 KRTAP8-1Q8IUC2 63 aa7.26□□□□□ -1.25
TNFRSF1A-213ENST00000540022 KRTAP20-1Q3LI63 56 aa7.24□□□□□ -1.25
TNFRSF1A-213ENST00000540022 LCE3AQ5TA76 89 aa7.22□□□□□ -1.25
TNFRSF1A-213ENST00000540022 SPRR2EP22531 72 aa7.16□□□□□ -1.26
TNFRSF1A-213ENST00000540022 SPRR2BP35325 72 aa7.16□□□□□ -1.26
TNFRSF1A-213ENST00000540022 SPRR2AP35326 72 aa7.16□□□□□ -1.26
TNFRSF1A-213ENST00000540022 LCE1AQ5T7P2 110 aa7.09□□□□□ -1.27
TNFRSF1A-213ENST00000540022 KRTAP23-1A1A580 65 aa7.07□□□□□ -1.28
TNFRSF1A-213ENST00000540022 KRTAP19-7Q3SYF9 63 aa7.06□□□□□ -1.28
TNFRSF1A-213ENST00000540022 KRTAP2-3P0C7H8 128 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms