RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 KRTAP10-6P60371 365 aaPredicted RBP6.4□□□□□ -1.38
CCDC42-202ENST00000539522 RPS28P62857 69 aaKnown RBP6.39□□□□□ -1.39
CCDC42-202ENST00000539522 SERP1Q9Y6X1 66 aa6.39□□□□□ -1.39
CCDC42-202ENST00000539522 H1FX-AS1Q4G0G2 97 aa6.35□□□□□ -1.39
CCDC42-202ENST00000539522 COA5Q86WW8 74 aa6.35□□□□□ -1.39
CCDC42-202ENST00000539522 CHKB-CPT1BH3BT56 60 aa6.32□□□□□ -1.4
CCDC42-202ENST00000539522 M0R2T5 61 aa6.32□□□□□ -1.4
CCDC42-202ENST00000539522 KRTAP9-8Q9BYQ0 159 aa6.32□□□□□ -1.4
CCDC42-202ENST00000539522 SPTSSBQ8NFR3 76 aa6.26□□□□□ -1.41
CCDC42-202ENST00000539522 S4R3F8 94 aa6.25□□□□□ -1.41
CCDC42-202ENST00000539522 MT2AP02795 61 aa6.24□□□□□ -1.41
CCDC42-202ENST00000539522 SMIM26A0A096LP01 95 aa6.23□□□□□ -1.41
CCDC42-202ENST00000539522 LCA10Q71F78 164 aa6.21□□□□□ -1.42
CCDC42-202ENST00000539522 MT1FP04733 61 aa6.2□□□□□ -1.42
CCDC42-202ENST00000539522 KRTAP9-2Q9BYQ4 174 aa6.2□□□□□ -1.42
CCDC42-202ENST00000539522 KRTAP3-3Q9BYR6 98 aa6.2□□□□□ -1.42
CCDC42-202ENST00000539522 LCE2DQ5TA82 110 aaPredicted RBP6.18□□□□□ -1.42
CCDC42-202ENST00000539522 CSAG1Q6PB30 78 aa6.17□□□□□ -1.42
CCDC42-202ENST00000539522 V9GYY9 64 aa6.15□□□□□ -1.42
CCDC42-202ENST00000539522 Q1T7F1 81 aa6.13□□□□□ -1.43
CCDC42-202ENST00000539522 LINC01558Q9Y6Z2 57 aa6.11□□□□□ -1.43
CCDC42-202ENST00000539522 KRTAP9-3Q9BYQ3 159 aa6.1□□□□□ -1.43
CCDC42-202ENST00000539522 USH2AO75445 5202 aa6.08□□□□□ -1.44
CCDC42-202ENST00000539522 SEC61GP60059 68 aa6.07□□□□□ -1.44
CCDC42-202ENST00000539522 KRTAP10-10P60014 251 aa6.06□□□□□ -1.44
CCDC42-202ENST00000539522 PRR15LQ9BU68 103 aa6.04□□□□□ -1.44
CCDC42-202ENST00000539522 A0A1B0GU69 56 aa6.03□□□□□ -1.44
CCDC42-202ENST00000539522 LCE2BO14633 110 aa6.03□□□□□ -1.44
CCDC42-202ENST00000539522 FSIP2Q5CZC0 6907 aa6.02□□□□□ -1.45
CCDC42-202ENST00000539522 H0YAA0 97 aa6.01□□□□□ -1.45
CCDC42-202ENST00000539522 SSPOA2VEC9 5147 aa5.98□□□□□ -1.45
CCDC42-202ENST00000539522 PSPHP1O15172 72 aa5.97□□□□□ -1.45
CCDC42-202ENST00000539522 ADM2Q7Z4H4 148 aa5.96□□□□□ -1.46
CCDC42-202ENST00000539522 KRTAP3-2Q9BYR7 98 aa5.95□□□□□ -1.46
CCDC42-202ENST00000539522 KRTAP19-1Q8IUB9 90 aa5.94□□□□□ -1.46
CCDC42-202ENST00000539522 Q5VV11 94 aa5.92□□□□□ -1.46
CCDC42-202ENST00000539522 A0A1B0GU33 70 aa5.89□□□□□ -1.47
CCDC42-202ENST00000539522 P0C880 135 aa5.89□□□□□ -1.47
CCDC42-202ENST00000539522 CRCT1Q9UGL9 99 aa5.88□□□□□ -1.47
CCDC42-202ENST00000539522 KRTAP9-6A0A140TA67 174 aa5.86□□□□□ -1.47
CCDC42-202ENST00000539522 UQCR11O14957 56 aa5.85□□□□□ -1.47
CCDC42-202ENST00000539522 SPRR2GQ9BYE4 73 aa5.85□□□□□ -1.47
CCDC42-202ENST00000539522 CRIPTQ9P021 101 aa5.82□□□□□ -1.48
CCDC42-202ENST00000539522 A6NED7 52 aa5.81□□□□□ -1.48
CCDC42-202ENST00000539522 M0QZ58 72 aa5.81□□□□□ -1.48
CCDC42-202ENST00000539522 MT1BP07438 61 aa5.79□□□□□ -1.48
CCDC42-202ENST00000539522 KRTAP19-8Q3LI54 63 aa5.78□□□□□ -1.48
CCDC42-202ENST00000539522 SPATA8Q6RVD6 105 aa5.77□□□□□ -1.49
CCDC42-202ENST00000539522 MIR22HGQ0VDD5 57 aa5.76□□□□□ -1.49
CCDC42-202ENST00000539522 R4GN34 69 aa5.76□□□□□ -1.49
CCDC42-202ENST00000539522 FCGBPQ9Y6R7 5405 aaPredicted RBP5.74□□□□□ -1.49
CCDC42-202ENST00000539522 KRTAP13-4Q3LI77 160 aa5.72□□□□□ -1.49
CCDC42-202ENST00000539522 KRTAP19-6Q3LI70 58 aa5.71□□□□□ -1.5
CCDC42-202ENST00000539522 CDC42SE1Q9NRR8 79 aa5.71□□□□□ -1.5
CCDC42-202ENST00000539522 BRK1Q8WUW1 75 aa5.66□□□□□ -1.5
CCDC42-202ENST00000539522 A0A0D9SG42 100 aa5.63□□□□□ -1.51
CCDC42-202ENST00000539522 A8MU10 97 aa5.63□□□□□ -1.51
CCDC42-202ENST00000539522 LINC01554Q52M75 96 aa5.62□□□□□ -1.51
CCDC42-202ENST00000539522 A6NN06 94 aa5.58□□□□□ -1.52
CCDC42-202ENST00000539522 K7ERS5 55 aa5.56□□□□□ -1.52
CCDC42-202ENST00000539522 SVIPQ8NHG7 77 aa5.55□□□□□ -1.52
CCDC42-202ENST00000539522 KRTAP10-5P60370 271 aa5.54□□□□□ -1.52
CCDC42-202ENST00000539522 KRTAP12-1P59990 96 aa5.53□□□□□ -1.52
CCDC42-202ENST00000539522 SPINT4Q6UDR6 99 aa5.53□□□□□ -1.52
CCDC42-202ENST00000539522 PRO0628Q9UI54 55 aa5.52□□□□□ -1.53
CCDC42-202ENST00000539522 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.5□□□□□ -1.53
CCDC42-202ENST00000539522 PLAC4Q8WY50 150 aa5.5□□□□□ -1.53
CCDC42-202ENST00000539522 KRTAP12-2P59991 146 aa5.49□□□□□ -1.53
CCDC42-202ENST00000539522 MT1XP80297 61 aa5.49□□□□□ -1.53
CCDC42-202ENST00000539522 MACF1Q9UPN3 7388 aaKnown RBP5.49□□□□□ -1.53
CCDC42-202ENST00000539522 PMAIP1Q13794 54 aa5.4□□□□□ -1.54
CCDC42-202ENST00000539522 CAMK2N1Q7Z7J9 78 aa5.39□□□□□ -1.55
CCDC42-202ENST00000539522 SYNE2Q8WXH0 6885 aaKnown RBP5.38□□□□□ -1.55
CCDC42-202ENST00000539522 PRO2289Q9P1D8 64 aa5.35□□□□□ -1.55
CCDC42-202ENST00000539522 KMT2DO14686 5537 aa5.32□□□□□ -1.56
CCDC42-202ENST00000539522 KRTAP9-7A8MTY7 169 aa5.3□□□□□ -1.56
CCDC42-202ENST00000539522 ROMO1P60602 79 aa5.28□□□□□ -1.56
CCDC42-202ENST00000539522 KRTAP10-7P60409 375 aaPredicted RBP5.25□□□□□ -1.57
CCDC42-202ENST00000539522 C10orf95Q9H7T3 257 aa5.25□□□□□ -1.57
CCDC42-202ENST00000539522 KRTAP6-3Q3LI67 103 aa5.2□□□□□ -1.58
CCDC42-202ENST00000539522 KRTAP10-12P60413 245 aa5.19□□□□□ -1.58
CCDC42-202ENST00000539522 KRTAP4-8A0A0G2JLE6 195 aa5.18□□□□□ -1.58
CCDC42-202ENST00000539522 KRTAP4-8Q9BYQ9 185 aa5.18□□□□□ -1.58
CCDC42-202ENST00000539522 TNP1P09430 55 aa5.14□□□□□ -1.59
CCDC42-202ENST00000539522 KRTAP25-1Q3LHN0 102 aa5.14□□□□□ -1.59
CCDC42-202ENST00000539522 MUC12Q9UKN1 5478 aa5.13□□□□□ -1.59
CCDC42-202ENST00000539522 KRTAP5-9P26371 169 aa5.13□□□□□ -1.59
CCDC42-202ENST00000539522 KTN1-AS1Q86SY8 53 aa5.11□□□□□ -1.59
CCDC42-202ENST00000539522 KRTAP8-1Q8IUC2 63 aa5.04□□□□□ -1.6
CCDC42-202ENST00000539522 MDN1Q9NU22 5596 aa5.04□□□□□ -1.6
CCDC42-202ENST00000539522 KRTAP23-1A1A580 65 aa5□□□□□ -1.61
CCDC42-202ENST00000539522 NEBP20929 6669 aa5□□□□□ -1.61
CCDC42-202ENST00000539522 PRAC1Q96KF2 57 aa4.99□□□□□ -1.61
CCDC42-202ENST00000539522 SPRR2FQ96RM1 72 aa4.98□□□□□ -1.61
CCDC42-202ENST00000539522 PP632Q6XCG6 107 aa4.96□□□□□ -1.62
CCDC42-202ENST00000539522 KRTAP19-7Q3SYF9 63 aa4.92□□□□□ -1.62
CCDC42-202ENST00000539522 LCE1AQ5T7P2 110 aa4.89□□□□□ -1.63
CCDC42-202ENST00000539522 LCE3AQ5TA76 89 aa4.87□□□□□ -1.63
CCDC42-202ENST00000539522 MT1EP04732 61 aa4.83□□□□□ -1.64
CCDC42-202ENST00000539522 SPRR2EP22531 72 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms