RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 PRR15LQ9BU68 103 aa10.58□□□□□ -0.72
TNFRSF1A-205ENST00000534885 SPTSSBQ8NFR3 76 aa10.56□□□□□ -0.72
TNFRSF1A-205ENST00000534885 LCA10Q71F78 164 aa10.55□□□□□ -0.72
TNFRSF1A-205ENST00000534885 SEC61BP60468 96 aaKnown RBP10.54□□□□□ -0.72
TNFRSF1A-205ENST00000534885 A8MU10 97 aa10.54□□□□□ -0.72
TNFRSF1A-205ENST00000534885 CDC42SE1Q9NRR8 79 aa10.49□□□□□ -0.73
TNFRSF1A-205ENST00000534885 LINC01558Q9Y6Z2 57 aa10.48□□□□□ -0.73
TNFRSF1A-205ENST00000534885 A6NED7 52 aa10.45□□□□□ -0.74
TNFRSF1A-205ENST00000534885 DMAC1Q96GE9 116 aa10.45□□□□□ -0.74
TNFRSF1A-205ENST00000534885 MUC17Q685J3 4493 aa10.43□□□□□ -0.74
TNFRSF1A-205ENST00000534885 KRTAP4-1Q9BYQ7 146 aa10.43□□□□□ -0.74
TNFRSF1A-205ENST00000534885 H3BS24 57 aa10.4□□□□□ -0.75
TNFRSF1A-205ENST00000534885 KRTAP3-1Q9BYR8 98 aa10.4□□□□□ -0.75
TNFRSF1A-205ENST00000534885 ACYP2P14621 99 aa10.38□□□□□ -0.75
TNFRSF1A-205ENST00000534885 COX6B2Q6YFQ2 88 aa10.37□□□□□ -0.75
TNFRSF1A-205ENST00000534885 MUC2Q02817 5179 aa10.31□□□□□ -0.76
TNFRSF1A-205ENST00000534885 UBR4Q5T4S7 5183 aa10.24□□□□□ -0.77
TNFRSF1A-205ENST00000534885 LINC01554Q52M75 96 aa10.22□□□□□ -0.77
TNFRSF1A-205ENST00000534885 H1FX-AS1Q4G0G2 97 aa10.14□□□□□ -0.79
TNFRSF1A-205ENST00000534885 KRTAP19-2Q3LHN2 52 aa10.11□□□□□ -0.79
TNFRSF1A-205ENST00000534885 RNF213Q63HN8 5207 aa10.09□□□□□ -0.79
TNFRSF1A-205ENST00000534885 A0A1B0GU69 56 aa10.09□□□□□ -0.79
TNFRSF1A-205ENST00000534885 S4R3F8 94 aa10.06□□□□□ -0.8
TNFRSF1A-205ENST00000534885 KRTAP3-3Q9BYR6 98 aa10.03□□□□□ -0.8
TNFRSF1A-205ENST00000534885 PRAC1Q96KF2 57 aa10.02□□□□□ -0.81
TNFRSF1A-205ENST00000534885 SPATA8Q6RVD6 105 aa9.94□□□□□ -0.82
TNFRSF1A-205ENST00000534885 UQCR11O14957 56 aa9.91□□□□□ -0.82
TNFRSF1A-205ENST00000534885 LCE2CQ5TA81 110 aa9.91□□□□□ -0.82
TNFRSF1A-205ENST00000534885 ADM2Q7Z4H4 148 aa9.89□□□□□ -0.83
TNFRSF1A-205ENST00000534885 FLGP20930 4061 aaPredicted RBP9.89□□□□□ -0.83
TNFRSF1A-205ENST00000534885 MIR22HGQ0VDD5 57 aa9.88□□□□□ -0.83
TNFRSF1A-205ENST00000534885 FAT4Q6V0I7 4981 aa9.88□□□□□ -0.83
TNFRSF1A-205ENST00000534885 CSAG1Q6PB30 78 aa9.83□□□□□ -0.84
TNFRSF1A-205ENST00000534885 MT1HP80294 61 aa9.7□□□□□ -0.86
TNFRSF1A-205ENST00000534885 KRTAP3-2Q9BYR7 98 aa9.65□□□□□ -0.87
TNFRSF1A-205ENST00000534885 KRTAP10-6P60371 365 aaPredicted RBP9.63□□□□□ -0.87
TNFRSF1A-205ENST00000534885 M0R2T5 61 aa9.59□□□□□ -0.87
TNFRSF1A-205ENST00000534885 P0C880 135 aa9.59□□□□□ -0.87
TNFRSF1A-205ENST00000534885 H0YAA0 97 aa9.59□□□□□ -0.87
TNFRSF1A-205ENST00000534885 A0A1B0GU33 70 aa9.55□□□□□ -0.88
TNFRSF1A-205ENST00000534885 ROMO1P60602 79 aa9.53□□□□□ -0.88
TNFRSF1A-205ENST00000534885 KRTAP25-1Q3LHN0 102 aa9.43□□□□□ -0.9
TNFRSF1A-205ENST00000534885 LORP23490 312 aaPredicted RBP9.4□□□□□ -0.91
TNFRSF1A-205ENST00000534885 KRTAP13-4Q3LI77 160 aa9.39□□□□□ -0.91
TNFRSF1A-205ENST00000534885 LCE2AQ5TA79 106 aaPredicted RBP9.36□□□□□ -0.91
TNFRSF1A-205ENST00000534885 KRTAP9-8Q9BYQ0 159 aa9.34□□□□□ -0.91
TNFRSF1A-205ENST00000534885 MT2AP02795 61 aa9.3□□□□□ -0.92
TNFRSF1A-205ENST00000534885 R4GN34 69 aa9.28□□□□□ -0.92
TNFRSF1A-205ENST00000534885 M0QZ58 72 aa9.27□□□□□ -0.93
TNFRSF1A-205ENST00000534885 MT1FP04733 61 aa9.26□□□□□ -0.93
TNFRSF1A-205ENST00000534885 K7ERS5 55 aa9.25□□□□□ -0.93
TNFRSF1A-205ENST00000534885 KRTAP10-10P60014 251 aa9.21□□□□□ -0.93
TNFRSF1A-205ENST00000534885 A0A0D9SG42 100 aa9.2□□□□□ -0.94
TNFRSF1A-205ENST00000534885 CRIPTQ9P021 101 aa9.17□□□□□ -0.94
TNFRSF1A-205ENST00000534885 A0A0A0MQY5 61 aa9.08□□□□□ -0.96
TNFRSF1A-205ENST00000534885 KRTAP19-1Q8IUB9 90 aa9.08□□□□□ -0.96
TNFRSF1A-205ENST00000534885 SPRR2GQ9BYE4 73 aa9.06□□□□□ -0.96
TNFRSF1A-205ENST00000534885 KRTAP12-1P59990 96 aa9□□□□□ -0.97
TNFRSF1A-205ENST00000534885 KRTAP9-3Q9BYQ3 159 aa9□□□□□ -0.97
TNFRSF1A-205ENST00000534885 KRTAP12-2P59991 146 aa8.99□□□□□ -0.97
TNFRSF1A-205ENST00000534885 SPINT4Q6UDR6 99 aa8.96□□□□□ -0.98
TNFRSF1A-205ENST00000534885 NDUFAF8A1L188 74 aa8.84□□□□□ -0.99
TNFRSF1A-205ENST00000534885 KRTAP19-8Q3LI54 63 aa8.82□□□□□ -1
TNFRSF1A-205ENST00000534885 KRTAP15-1Q3LI76 137 aa8.79□□□□□ -1
TNFRSF1A-205ENST00000534885 LCE2BO14633 110 aa8.78□□□□□ -1
TNFRSF1A-205ENST00000534885 MT1BP07438 61 aa8.75□□□□□ -1.01
TNFRSF1A-205ENST00000534885 PLAC4Q8WY50 150 aa8.71□□□□□ -1.01
TNFRSF1A-205ENST00000534885 CAMK2N1Q7Z7J9 78 aa8.68□□□□□ -1.02
TNFRSF1A-205ENST00000534885 C10orf95Q9H7T3 257 aa8.66□□□□□ -1.02
TNFRSF1A-205ENST00000534885 USH2AO75445 5202 aa8.58□□□□□ -1.04
TNFRSF1A-205ENST00000534885 LUZP6Q538Z0 58 aa8.52□□□□□ -1.05
TNFRSF1A-205ENST00000534885 LCE2DQ5TA82 110 aaPredicted RBP8.47□□□□□ -1.05
TNFRSF1A-205ENST00000534885 MT1XP80297 61 aa8.45□□□□□ -1.06
TNFRSF1A-205ENST00000534885 KRTAP10-5P60370 271 aa8.43□□□□□ -1.06
TNFRSF1A-205ENST00000534885 FSIP2Q5CZC0 6907 aa8.38□□□□□ -1.07
TNFRSF1A-205ENST00000534885 SSPOA2VEC9 5147 aa8.31□□□□□ -1.08
TNFRSF1A-205ENST00000534885 PRO2289Q9P1D8 64 aa8.3□□□□□ -1.08
TNFRSF1A-205ENST00000534885 KRTAP9-2Q9BYQ4 174 aa8.23□□□□□ -1.09
TNFRSF1A-205ENST00000534885 TNP1P09430 55 aa8.22□□□□□ -1.09
TNFRSF1A-205ENST00000534885 KRTAP19-6Q3LI70 58 aa8.22□□□□□ -1.09
TNFRSF1A-205ENST00000534885 KRTAP10-7P60409 375 aaPredicted RBP8.13□□□□□ -1.11
TNFRSF1A-205ENST00000534885 PP632Q6XCG6 107 aa8.02□□□□□ -1.12
TNFRSF1A-205ENST00000534885 FCGBPQ9Y6R7 5405 aaPredicted RBP7.99□□□□□ -1.13
TNFRSF1A-205ENST00000534885 KRTAP10-12P60413 245 aa7.98□□□□□ -1.13
TNFRSF1A-205ENST00000534885 LCE3AQ5TA76 89 aa7.94□□□□□ -1.14
TNFRSF1A-205ENST00000534885 CRCT1Q9UGL9 99 aa7.92□□□□□ -1.14
TNFRSF1A-205ENST00000534885 KMT2DO14686 5537 aa7.92□□□□□ -1.14
TNFRSF1A-205ENST00000534885 KRTAP23-1A1A580 65 aa7.9□□□□□ -1.14
TNFRSF1A-205ENST00000534885 KRTAP4-8A0A0G2JLE6 195 aa7.85□□□□□ -1.15
TNFRSF1A-205ENST00000534885 KRTAP4-8Q9BYQ9 185 aa7.85□□□□□ -1.15
TNFRSF1A-205ENST00000534885 KRTAP8-1Q8IUC2 63 aa7.74□□□□□ -1.17
TNFRSF1A-205ENST00000534885 MACF1Q9UPN3 7388 aaKnown RBP7.64□□□□□ -1.19
TNFRSF1A-205ENST00000534885 KRTAP19-5Q3LI72 72 aa7.62□□□□□ -1.19
TNFRSF1A-205ENST00000534885 KRTAP12-3P60328 96 aa7.61□□□□□ -1.19
TNFRSF1A-205ENST00000534885 KRTAP9-6A0A140TA67 174 aa7.58□□□□□ -1.2
TNFRSF1A-205ENST00000534885 KRTAP19-7Q3SYF9 63 aa7.54□□□□□ -1.2
TNFRSF1A-205ENST00000534885 SPRR5A0A1B0GTR4 108 aa7.47□□□□□ -1.21
TNFRSF1A-205ENST00000534885 SYNE2Q8WXH0 6885 aaKnown RBP7.43□□□□□ -1.22
TNFRSF1A-205ENST00000534885 MT1EP04732 61 aa7.4□□□□□ -1.23
TNFRSF1A-205ENST00000534885 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 385.5 ms