RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 COA5Q86WW8 74 aa7.9□□□□□ -1.14
TRIM3-213ENST00000533309 SERP1Q9Y6X1 66 aa7.85□□□□□ -1.15
TRIM3-213ENST00000533309 LCA10Q71F78 164 aa7.83□□□□□ -1.16
TRIM3-213ENST00000533309 S4R3F8 94 aa7.83□□□□□ -1.16
TRIM3-213ENST00000533309 KRTAP3-3Q9BYR6 98 aa7.81□□□□□ -1.16
TRIM3-213ENST00000533309 CHKB-CPT1BH3BT56 60 aa7.8□□□□□ -1.16
TRIM3-213ENST00000533309 RPS28P62857 69 aaKnown RBP7.75□□□□□ -1.17
TRIM3-213ENST00000533309 MT1HP80294 61 aa7.73□□□□□ -1.17
TRIM3-213ENST00000533309 SPTSSBQ8NFR3 76 aa7.67□□□□□ -1.18
TRIM3-213ENST00000533309 CSAG1Q6PB30 78 aa7.67□□□□□ -1.18
TRIM3-213ENST00000533309 SMIM26A0A096LP01 95 aa7.61□□□□□ -1.19
TRIM3-213ENST00000533309 M0R2T5 61 aa7.58□□□□□ -1.2
TRIM3-213ENST00000533309 LCE2AQ5TA79 106 aaPredicted RBP7.57□□□□□ -1.2
TRIM3-213ENST00000533309 LINC01558Q9Y6Z2 57 aa7.53□□□□□ -1.2
TRIM3-213ENST00000533309 Q1T7F1 81 aa7.52□□□□□ -1.2
TRIM3-213ENST00000533309 H0YAA0 97 aa7.51□□□□□ -1.21
TRIM3-213ENST00000533309 KRTAP3-2Q9BYR7 98 aa7.49□□□□□ -1.21
TRIM3-213ENST00000533309 KRTAP10-6P60371 365 aaPredicted RBP7.47□□□□□ -1.21
TRIM3-213ENST00000533309 ADM2Q7Z4H4 148 aa7.47□□□□□ -1.21
TRIM3-213ENST00000533309 V9GYY9 64 aa7.47□□□□□ -1.21
TRIM3-213ENST00000533309 A0A1B0GU69 56 aa7.45□□□□□ -1.22
TRIM3-213ENST00000533309 P0C880 135 aa7.44□□□□□ -1.22
TRIM3-213ENST00000533309 LORP23490 312 aaPredicted RBP7.44□□□□□ -1.22
TRIM3-213ENST00000533309 KRTAP9-8Q9BYQ0 159 aa7.43□□□□□ -1.22
TRIM3-213ENST00000533309 PRR15LQ9BU68 103 aa7.42□□□□□ -1.22
TRIM3-213ENST00000533309 SEC61GP60059 68 aa7.41□□□□□ -1.22
TRIM3-213ENST00000533309 PSPHP1O15172 72 aa7.4□□□□□ -1.22
TRIM3-213ENST00000533309 MT2AP02795 61 aa7.39□□□□□ -1.23
TRIM3-213ENST00000533309 MT1FP04733 61 aa7.35□□□□□ -1.23
TRIM3-213ENST00000533309 Q5VV11 94 aa7.35□□□□□ -1.23
TRIM3-213ENST00000533309 A0A1B0GU33 70 aa7.28□□□□□ -1.24
TRIM3-213ENST00000533309 KRTAP10-10P60014 251 aa7.28□□□□□ -1.24
TRIM3-213ENST00000533309 KRTAP13-4Q3LI77 160 aa7.25□□□□□ -1.25
TRIM3-213ENST00000533309 CRIPTQ9P021 101 aa7.22□□□□□ -1.25
TRIM3-213ENST00000533309 R4GN34 69 aa7.2□□□□□ -1.26
TRIM3-213ENST00000533309 SPATA8Q6RVD6 105 aa7.19□□□□□ -1.26
TRIM3-213ENST00000533309 M0QZ58 72 aa7.19□□□□□ -1.26
TRIM3-213ENST00000533309 UQCR11O14957 56 aa7.19□□□□□ -1.26
TRIM3-213ENST00000533309 KRTAP9-3Q9BYQ3 159 aa7.17□□□□□ -1.26
TRIM3-213ENST00000533309 KRTAP19-1Q8IUB9 90 aa7.16□□□□□ -1.26
TRIM3-213ENST00000533309 A6NED7 52 aa7.16□□□□□ -1.26
TRIM3-213ENST00000533309 SPRR2GQ9BYE4 73 aa7.16□□□□□ -1.26
TRIM3-213ENST00000533309 MIR22HGQ0VDD5 57 aa7.1□□□□□ -1.27
TRIM3-213ENST00000533309 A8MU10 97 aa7.08□□□□□ -1.28
TRIM3-213ENST00000533309 LINC01554Q52M75 96 aa7.06□□□□□ -1.28
TRIM3-213ENST00000533309 A0A0D9SG42 100 aa7.05□□□□□ -1.28
TRIM3-213ENST00000533309 CDC42SE1Q9NRR8 79 aa7.01□□□□□ -1.29
TRIM3-213ENST00000533309 LCE2BO14633 110 aa7.01□□□□□ -1.29
TRIM3-213ENST00000533309 KRTAP19-8Q3LI54 63 aa6.99□□□□□ -1.29
TRIM3-213ENST00000533309 BRK1Q8WUW1 75 aa6.96□□□□□ -1.3
TRIM3-213ENST00000533309 A6NN06 94 aa6.94□□□□□ -1.3
TRIM3-213ENST00000533309 KRTAP12-1P59990 96 aa6.94□□□□□ -1.3
TRIM3-213ENST00000533309 USH2AO75445 5202 aa6.93□□□□□ -1.3
TRIM3-213ENST00000533309 MT1BP07438 61 aa6.93□□□□□ -1.3
TRIM3-213ENST00000533309 KRTAP12-2P59991 146 aa6.91□□□□□ -1.3
TRIM3-213ENST00000533309 LCE2DQ5TA82 110 aaPredicted RBP6.9□□□□□ -1.3
TRIM3-213ENST00000533309 SPINT4Q6UDR6 99 aa6.87□□□□□ -1.31
TRIM3-213ENST00000533309 PLAC4Q8WY50 150 aa6.82□□□□□ -1.32
TRIM3-213ENST00000533309 PRO0628Q9UI54 55 aa6.79□□□□□ -1.32
TRIM3-213ENST00000533309 K7ERS5 55 aa6.76□□□□□ -1.33
TRIM3-213ENST00000533309 SSPOA2VEC9 5147 aa6.74□□□□□ -1.33
TRIM3-213ENST00000533309 KRTAP9-2Q9BYQ4 174 aa6.73□□□□□ -1.33
TRIM3-213ENST00000533309 CAMK2N1Q7Z7J9 78 aa6.72□□□□□ -1.33
TRIM3-213ENST00000533309 MT1XP80297 61 aa6.67□□□□□ -1.34
TRIM3-213ENST00000533309 FSIP2Q5CZC0 6907 aa6.66□□□□□ -1.34
TRIM3-213ENST00000533309 KRTAP10-5P60370 271 aa6.64□□□□□ -1.35
TRIM3-213ENST00000533309 KRTAP19-6Q3LI70 58 aa6.61□□□□□ -1.35
TRIM3-213ENST00000533309 C10orf95Q9H7T3 257 aa6.58□□□□□ -1.36
TRIM3-213ENST00000533309 PMAIP1Q13794 54 aa6.56□□□□□ -1.36
TRIM3-213ENST00000533309 PRO2289Q9P1D8 64 aa6.54□□□□□ -1.36
TRIM3-213ENST00000533309 ROMO1P60602 79 aa6.5□□□□□ -1.37
TRIM3-213ENST00000533309 FCGBPQ9Y6R7 5405 aaPredicted RBP6.46□□□□□ -1.37
TRIM3-213ENST00000533309 CRCT1Q9UGL9 99 aa6.46□□□□□ -1.38
TRIM3-213ENST00000533309 KRTAP10-7P60409 375 aaPredicted RBP6.39□□□□□ -1.39
TRIM3-213ENST00000533309 TNP1P09430 55 aa6.36□□□□□ -1.39
TRIM3-213ENST00000533309 KRTAP25-1Q3LHN0 102 aa6.35□□□□□ -1.39
TRIM3-213ENST00000533309 KRTAP10-12P60413 245 aa6.32□□□□□ -1.4
TRIM3-213ENST00000533309 KRTAP9-6A0A140TA67 174 aa6.25□□□□□ -1.41
TRIM3-213ENST00000533309 KTN1-AS1Q86SY8 53 aa6.25□□□□□ -1.41
TRIM3-213ENST00000533309 KMT2DO14686 5537 aa6.25□□□□□ -1.41
TRIM3-213ENST00000533309 PRAC1Q96KF2 57 aa6.21□□□□□ -1.42
TRIM3-213ENST00000533309 KRTAP4-8A0A0G2JLE6 195 aa6.17□□□□□ -1.42
TRIM3-213ENST00000533309 LCE3AQ5TA76 89 aa6.17□□□□□ -1.42
TRIM3-213ENST00000533309 KRTAP4-8Q9BYQ9 185 aa6.17□□□□□ -1.42
TRIM3-213ENST00000533309 KRTAP23-1A1A580 65 aa6.13□□□□□ -1.43
TRIM3-213ENST00000533309 MACF1Q9UPN3 7388 aaKnown RBP6.11□□□□□ -1.43
TRIM3-213ENST00000533309 PP632Q6XCG6 107 aa6.07□□□□□ -1.44
TRIM3-213ENST00000533309 KRTAP8-1Q8IUC2 63 aa6.03□□□□□ -1.44
TRIM3-213ENST00000533309 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.99□□□□□ -1.45
TRIM3-213ENST00000533309 KRTAP19-5Q3LI72 72 aa5.96□□□□□ -1.45
TRIM3-213ENST00000533309 KRTAP19-7Q3SYF9 63 aa5.96□□□□□ -1.46
TRIM3-213ENST00000533309 SYNE2Q8WXH0 6885 aaKnown RBP5.92□□□□□ -1.46
TRIM3-213ENST00000533309 KRTAP12-3P60328 96 aa5.92□□□□□ -1.46
TRIM3-213ENST00000533309 KRTAP5-9P26371 169 aa5.85□□□□□ -1.47
TRIM3-213ENST00000533309 MT1EP04732 61 aa5.85□□□□□ -1.47
TRIM3-213ENST00000533309 MUC12Q9UKN1 5478 aa5.84□□□□□ -1.47
TRIM3-213ENST00000533309 SPRR2FQ96RM1 72 aa5.83□□□□□ -1.48
TRIM3-213ENST00000533309 KRTAP6-3Q3LI67 103 aa5.8□□□□□ -1.48
TRIM3-213ENST00000533309 H3BS24 57 aa5.77□□□□□ -1.48
TRIM3-213ENST00000533309 KRTAP15-1Q3LI76 137 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms