RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 M0R2T5 61 aa7.62□□□□□ -1.19
CPSF1-208ENST00000532560 LORP23490 312 aaPredicted RBP7.6□□□□□ -1.19
CPSF1-208ENST00000532560 KRTAP10-6P60371 365 aaPredicted RBP7.6□□□□□ -1.19
CPSF1-208ENST00000532560 SPINK7P58062 85 aa7.59□□□□□ -1.19
CPSF1-208ENST00000532560 RBM12B-AS1Q9P1G2 102 aa7.59□□□□□ -1.19
CPSF1-208ENST00000532560 LCE2DQ5TA82 110 aaPredicted RBP7.58□□□□□ -1.2
CPSF1-208ENST00000532560 CRCT1Q9UGL9 99 aa7.58□□□□□ -1.2
CPSF1-208ENST00000532560 COA5Q86WW8 74 aa7.56□□□□□ -1.2
CPSF1-208ENST00000532560 BRK1Q8WUW1 75 aa7.51□□□□□ -1.21
CPSF1-208ENST00000532560 Q5W150 140 aa7.5□□□□□ -1.21
CPSF1-208ENST00000532560 ACYP2P14621 99 aa7.47□□□□□ -1.21
CPSF1-208ENST00000532560 IGKV2-30P06310 120 aa7.45□□□□□ -1.22
CPSF1-208ENST00000532560 PSPHP1O15172 72 aa7.44□□□□□ -1.22
CPSF1-208ENST00000532560 C7orf65Q6ZTY9 151 aa7.44□□□□□ -1.22
CPSF1-208ENST00000532560 LINC01558Q9Y6Z2 57 aa7.44□□□□□ -1.22
CPSF1-208ENST00000532560 A8MUN3 132 aa7.43□□□□□ -1.22
CPSF1-208ENST00000532560 Q5VV11 94 aa7.43□□□□□ -1.22
CPSF1-208ENST00000532560 DMAC1Q96GE9 116 aa7.43□□□□□ -1.22
CPSF1-208ENST00000532560 IGKV2D-30A0A075B6S6 120 aa7.42□□□□□ -1.22
CPSF1-208ENST00000532560 PRR15LQ9BU68 103 aa7.41□□□□□ -1.22
CPSF1-208ENST00000532560 KRTAP9-8Q9BYQ0 159 aa7.38□□□□□ -1.23
CPSF1-208ENST00000532560 CHKB-CPT1BH3BT56 60 aa7.37□□□□□ -1.23
CPSF1-208ENST00000532560 H1FX-AS1Q4G0G2 97 aa7.31□□□□□ -1.24
CPSF1-208ENST00000532560 MT2AP02795 61 aa7.3□□□□□ -1.24
CPSF1-208ENST00000532560 A6NED7 52 aa7.28□□□□□ -1.24
CPSF1-208ENST00000532560 CDC42SE1Q9NRR8 79 aa7.26□□□□□ -1.25
CPSF1-208ENST00000532560 MT1FP04733 61 aa7.24□□□□□ -1.25
CPSF1-208ENST00000532560 KRTAP10-10P60014 251 aa7.2□□□□□ -1.26
CPSF1-208ENST00000532560 SPTSSBQ8NFR3 76 aa7.19□□□□□ -1.26
CPSF1-208ENST00000532560 LCA10Q71F78 164 aa7.18□□□□□ -1.26
CPSF1-208ENST00000532560 A0A1B0GU69 56 aa7.17□□□□□ -1.26
CPSF1-208ENST00000532560 KRTAP3-1Q9BYR8 98 aa7.17□□□□□ -1.26
CPSF1-208ENST00000532560 KRTAP9-3Q9BYQ3 159 aa7.15□□□□□ -1.26
CPSF1-208ENST00000532560 PMAIP1Q13794 54 aa7.13□□□□□ -1.27
CPSF1-208ENST00000532560 KRTAP9-7A8MTY7 169 aa7.12□□□□□ -1.27
CPSF1-208ENST00000532560 S4R3F8 94 aa7.11□□□□□ -1.27
CPSF1-208ENST00000532560 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.08□□□□□ -1.28
CPSF1-208ENST00000532560 USH2AO75445 5202 aa7.08□□□□□ -1.28
CPSF1-208ENST00000532560 UQCR11O14957 56 aa7.07□□□□□ -1.28
CPSF1-208ENST00000532560 SEC61GP60059 68 aa7.07□□□□□ -1.28
CPSF1-208ENST00000532560 LCE2BO14633 110 aa7.06□□□□□ -1.28
CPSF1-208ENST00000532560 SPATA8Q6RVD6 105 aa7.06□□□□□ -1.28
CPSF1-208ENST00000532560 A8MU10 97 aa7.05□□□□□ -1.28
CPSF1-208ENST00000532560 A6NN06 94 aa7.03□□□□□ -1.28
CPSF1-208ENST00000532560 CSAG1Q6PB30 78 aa7.02□□□□□ -1.29
CPSF1-208ENST00000532560 KTN1-AS1Q86SY8 53 aa7.01□□□□□ -1.29
CPSF1-208ENST00000532560 SSPOA2VEC9 5147 aa7.01□□□□□ -1.29
CPSF1-208ENST00000532560 MIR22HGQ0VDD5 57 aa6.99□□□□□ -1.29
CPSF1-208ENST00000532560 KRTAP3-3Q9BYR6 98 aa6.97□□□□□ -1.29
CPSF1-208ENST00000532560 FCGBPQ9Y6R7 5405 aaPredicted RBP6.92□□□□□ -1.3
CPSF1-208ENST00000532560 KRTAP19-1Q8IUB9 90 aa6.87□□□□□ -1.31
CPSF1-208ENST00000532560 KRTAP19-6Q3LI70 58 aa6.82□□□□□ -1.32
CPSF1-208ENST00000532560 A0A1B0GU33 70 aa6.81□□□□□ -1.32
CPSF1-208ENST00000532560 H0YAA0 97 aa6.8□□□□□ -1.32
CPSF1-208ENST00000532560 SPRR2GQ9BYE4 73 aa6.8□□□□□ -1.32
CPSF1-208ENST00000532560 SYNE2Q8WXH0 6885 aaKnown RBP6.76□□□□□ -1.33
CPSF1-208ENST00000532560 MACF1Q9UPN3 7388 aaKnown RBP6.75□□□□□ -1.33
CPSF1-208ENST00000532560 CRIPTQ9P021 101 aa6.75□□□□□ -1.33
CPSF1-208ENST00000532560 KRTAP19-8Q3LI54 63 aa6.73□□□□□ -1.33
CPSF1-208ENST00000532560 MT1BP07438 61 aa6.7□□□□□ -1.34
CPSF1-208ENST00000532560 K7ERS5 55 aa6.69□□□□□ -1.34
CPSF1-208ENST00000532560 ADM2Q7Z4H4 148 aa6.68□□□□□ -1.34
CPSF1-208ENST00000532560 P0C880 135 aa6.56□□□□□ -1.36
CPSF1-208ENST00000532560 KRTAP3-2Q9BYR7 98 aa6.55□□□□□ -1.36
CPSF1-208ENST00000532560 PRAC1Q96KF2 57 aa6.53□□□□□ -1.36
CPSF1-208ENST00000532560 KRTAP10-5P60370 271 aa6.52□□□□□ -1.37
CPSF1-208ENST00000532560 R4GN34 69 aa6.51□□□□□ -1.37
CPSF1-208ENST00000532560 M0QZ58 72 aa6.47□□□□□ -1.37
CPSF1-208ENST00000532560 KRTAP6-3Q3LI67 103 aa6.46□□□□□ -1.38
CPSF1-208ENST00000532560 LINC01554Q52M75 96 aa6.45□□□□□ -1.38
CPSF1-208ENST00000532560 ROMO1P60602 79 aa6.42□□□□□ -1.38
CPSF1-208ENST00000532560 KRTAP13-4Q3LI77 160 aa6.41□□□□□ -1.38
CPSF1-208ENST00000532560 KRTAP25-1Q3LHN0 102 aa6.4□□□□□ -1.38
CPSF1-208ENST00000532560 NEBP20929 6669 aa6.4□□□□□ -1.39
CPSF1-208ENST00000532560 PLAC4Q8WY50 150 aa6.39□□□□□ -1.39
CPSF1-208ENST00000532560 A0A0D9SG42 100 aa6.35□□□□□ -1.39
CPSF1-208ENST00000532560 PRO2289Q9P1D8 64 aa6.34□□□□□ -1.39
CPSF1-208ENST00000532560 MT1XP80297 61 aa6.33□□□□□ -1.4
CPSF1-208ENST00000532560 MUC12Q9UKN1 5478 aa6.32□□□□□ -1.4
CPSF1-208ENST00000532560 KRTAP12-1P59990 96 aa6.26□□□□□ -1.41
CPSF1-208ENST00000532560 KRTAP12-2P59991 146 aa6.23□□□□□ -1.41
CPSF1-208ENST00000532560 KRTAP20-1Q3LI63 56 aa6.2□□□□□ -1.42
CPSF1-208ENST00000532560 SPINT4Q6UDR6 99 aa6.2□□□□□ -1.42
CPSF1-208ENST00000532560 KRTAP5-9P26371 169 aa6.16□□□□□ -1.42
CPSF1-208ENST00000532560 MDN1Q9NU22 5596 aa6.13□□□□□ -1.43
CPSF1-208ENST00000532560 KMT2DO14686 5537 aa6.06□□□□□ -1.44
CPSF1-208ENST00000532560 KRTAP10-7P60409 375 aaPredicted RBP6.02□□□□□ -1.45
CPSF1-208ENST00000532560 KRTAP8-1Q8IUC2 63 aa6.02□□□□□ -1.45
CPSF1-208ENST00000532560 KRTAP10-12P60413 245 aa6.01□□□□□ -1.45
CPSF1-208ENST00000532560 CAMK2N1Q7Z7J9 78 aa6.01□□□□□ -1.45
CPSF1-208ENST00000532560 SPRR2FQ96RM1 72 aa5.98□□□□□ -1.45
CPSF1-208ENST00000532560 KRTAP4-8A0A0G2JLE6 195 aa5.96□□□□□ -1.46
CPSF1-208ENST00000532560 KRTAP4-8Q9BYQ9 185 aa5.96□□□□□ -1.46
CPSF1-208ENST00000532560 C10orf95Q9H7T3 257 aa5.95□□□□□ -1.46
CPSF1-208ENST00000532560 KRTAP2-3P0C7H8 128 aa5.91□□□□□ -1.46
CPSF1-208ENST00000532560 KRTAP2-4Q9BYR9 128 aa5.91□□□□□ -1.46
CPSF1-208ENST00000532560 PP632Q6XCG6 107 aa5.88□□□□□ -1.47
CPSF1-208ENST00000532560 SPRR2EP22531 72 aa5.85□□□□□ -1.47
CPSF1-208ENST00000532560 SPRR2BP35325 72 aa5.85□□□□□ -1.47
CPSF1-208ENST00000532560 SPRR2AP35326 72 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms