RNA–Protein interactions for RNA: ENST00000520520.1

CTNNA1-223, Transcript of catenin alpha 1, human

TSL 3

Gene CTNNA1, Length 484 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNNA1-223	ENST00000520520	SEC61G	P60059	68 aa		5.03	□□□□□ -1.6
CTNNA1-223	ENST00000520520	SPTSSB	Q8NFR3	76 aa		5.03	□□□□□ -1.6
CTNNA1-223	ENST00000520520	KRTAP23-1	A1A580	65 aa		5.02	□□□□□ -1.61
CTNNA1-223	ENST00000520520	LINC00313	P59037	77 aa		5.02	□□□□□ -1.61
CTNNA1-223	ENST00000520520	MT1HL1	P0DM35	61 aa		5.01	□□□□□ -1.61
CTNNA1-223	ENST00000520520	KRTAP13-3	Q3SY46	172 aa		5.01	□□□□□ -1.61
CTNNA1-223	ENST00000520520	LCE1D	Q5T752	114 aa		5.01	□□□□□ -1.61
CTNNA1-223	ENST00000520520	DMAC1	Q96GE9	116 aa		5.01	□□□□□ -1.61
CTNNA1-223	ENST00000520520	ANAPC11	Q9NYG5	84 aa		5	□□□□□ -1.61
CTNNA1-223	ENST00000520520	LCA10	Q71F78	164 aa		4.98	□□□□□ -1.61
CTNNA1-223	ENST00000520520		A0A087X002	238 aa		4.97	□□□□□ -1.61
CTNNA1-223	ENST00000520520	IGKV2-30	P06310	120 aa		4.97	□□□□□ -1.61
CTNNA1-223	ENST00000520520		Q5W150	140 aa		4.97	□□□□□ -1.61
CTNNA1-223	ENST00000520520	NOTCH2NL	Q7Z3S9	236 aa		4.97	□□□□□ -1.61
CTNNA1-223	ENST00000520520		A6NN06	94 aa		4.96	□□□□□ -1.62
CTNNA1-223	ENST00000520520	C7orf65	Q6ZTY9	151 aa		4.96	□□□□□ -1.62
CTNNA1-223	ENST00000520520	KRTAP9-3	Q9BYQ3	159 aa		4.96	□□□□□ -1.62
CTNNA1-223	ENST00000520520	TNXB	P22105	4242 aa		4.94	□□□□□ -1.62
CTNNA1-223	ENST00000520520		A0A1B0GU69	56 aa		4.94	□□□□□ -1.62
CTNNA1-223	ENST00000520520	PRR26	Q8N8Z3	221 aa		4.94	□□□□□ -1.62
CTNNA1-223	ENST00000520520	SPINK7	P58062	85 aa		4.92	□□□□□ -1.62
CTNNA1-223	ENST00000520520		A8MU10	97 aa		4.91	□□□□□ -1.62
CTNNA1-223	ENST00000520520	SPINK1	P00995	79 aa		4.9	□□□□□ -1.63
CTNNA1-223	ENST00000520520	LPA	P08519	4548 aa		4.89	□□□□□ -1.63
CTNNA1-223	ENST00000520520	KRTAP16-1	A8MUX0	517 aa		4.89	□□□□□ -1.63
CTNNA1-223	ENST00000520520	RPS29	P62273	56 aa	Known RBP	4.89	□□□□□ -1.63
CTNNA1-223	ENST00000520520	KRTAP13-2	Q52LG2	175 aa		4.89	□□□□□ -1.63
CTNNA1-223	ENST00000520520	KRTAP4-7	Q9BYR0	210 aa		4.88	□□□□□ -1.63
CTNNA1-223	ENST00000520520	IGKV2D-30	A0A075B6S6	120 aa		4.87	□□□□□ -1.63
CTNNA1-223	ENST00000520520	UQCR11	O14957	56 aa		4.87	□□□□□ -1.63
CTNNA1-223	ENST00000520520	TYMSOS	Q8TAI1	123 aa		4.87	□□□□□ -1.63
CTNNA1-223	ENST00000520520	LCE5A	Q5TCM9	118 aa		4.85	□□□□□ -1.63
CTNNA1-223	ENST00000520520	RETNLB	Q9BQ08	111 aa		4.85	□□□□□ -1.63
CTNNA1-223	ENST00000520520	KRTAP10-8	P60410	259 aa		4.84	□□□□□ -1.63
CTNNA1-223	ENST00000520520	MIR22HG	Q0VDD5	57 aa		4.84	□□□□□ -1.63
CTNNA1-223	ENST00000520520	SPATA8	Q6RVD6	105 aa		4.84	□□□□□ -1.63
CTNNA1-223	ENST00000520520	KRTAP4-9	Q9BYQ8	210 aa		4.84	□□□□□ -1.63
CTNNA1-223	ENST00000520520	RBM12B-AS1	Q9P1G2	102 aa		4.84	□□□□□ -1.63
CTNNA1-223	ENST00000520520	KRTAP1-4	P0C5Y4	121 aa		4.83	□□□□□ -1.64
CTNNA1-223	ENST00000520520	LINC00304	Q8N9R0	145 aa		4.82	□□□□□ -1.64
CTNNA1-223	ENST00000520520	MUC2	Q02817	5179 aa		4.76	□□□□□ -1.65
CTNNA1-223	ENST00000520520	KRTAP4-11	Q9BYQ6	195 aa		4.72	□□□□□ -1.65
CTNNA1-223	ENST00000520520		A8MUU9	505 aa		4.71	□□□□□ -1.66
CTNNA1-223	ENST00000520520	C20orf166-AS1	Q96NR2	134 aa		4.71	□□□□□ -1.66
CTNNA1-223	ENST00000520520	KRTAP4-2	Q9BYR5	136 aa		4.68	□□□□□ -1.66
CTNNA1-223	ENST00000520520	FAT4	Q6V0I7	4981 aa		4.67	□□□□□ -1.66
CTNNA1-223	ENST00000520520		K7ERS5	55 aa		4.66	□□□□□ -1.66
CTNNA1-223	ENST00000520520	LINC01554	Q52M75	96 aa		4.65	□□□□□ -1.67
CTNNA1-223	ENST00000520520	PRAC1	Q96KF2	57 aa		4.64	□□□□□ -1.67
CTNNA1-223	ENST00000520520		A0A1B0GU33	70 aa		4.62	□□□□□ -1.67
CTNNA1-223	ENST00000520520	C9orf92	A6NGG3	77 aa		4.62	□□□□□ -1.67
CTNNA1-223	ENST00000520520	H1FX-AS1	Q4G0G2	97 aa		4.62	□□□□□ -1.67
CTNNA1-223	ENST00000520520	KRTAP15-1	Q3LI76	137 aa		4.61	□□□□□ -1.67
CTNNA1-223	ENST00000520520	COX6B2	Q6YFQ2	88 aa		4.6	□□□□□ -1.67
CTNNA1-223	ENST00000520520		H0YAA0	97 aa		4.58	□□□□□ -1.68
CTNNA1-223	ENST00000520520	ADM2	Q7Z4H4	148 aa		4.58	□□□□□ -1.68
CTNNA1-223	ENST00000520520	CSAG1	Q6PB30	78 aa		4.57	□□□□□ -1.68
CTNNA1-223	ENST00000520520	MUC17	Q685J3	4493 aa		4.55	□□□□□ -1.68
CTNNA1-223	ENST00000520520	TPRXL	Q17RH7	258 aa		4.5	□□□□□ -1.69
CTNNA1-223	ENST00000520520	RPL37	P61927	97 aa	Known RBP	4.49	□□□□□ -1.69
CTNNA1-223	ENST00000520520	KRTAP25-1	Q3LHN0	102 aa		4.49	□□□□□ -1.69
CTNNA1-223	ENST00000520520	FSIP2	Q5CZC0	6907 aa		4.48	□□□□□ -1.69
CTNNA1-223	ENST00000520520		S4R3F8	94 aa		4.47	□□□□□ -1.69
CTNNA1-223	ENST00000520520	ROMO1	P60602	79 aa		4.44	□□□□□ -1.7
CTNNA1-223	ENST00000520520	KRTAP4-1	Q9BYQ7	146 aa		4.42	□□□□□ -1.7
CTNNA1-223	ENST00000520520	CRCT1	Q9UGL9	99 aa		4.41	□□□□□ -1.7
CTNNA1-223	ENST00000520520	SEC61B	P60468	96 aa	Known RBP	4.39	□□□□□ -1.71
CTNNA1-223	ENST00000520520	KRTAP10-6	P60371	365 aa	Predicted RBP	4.35	□□□□□ -1.71
CTNNA1-223	ENST00000520520		A0A0D9SG42	100 aa		4.31	□□□□□ -1.72
CTNNA1-223	ENST00000520520		M0QZ58	72 aa		4.3	□□□□□ -1.72
CTNNA1-223	ENST00000520520	MT1H	P80294	61 aa		4.29	□□□□□ -1.72
CTNNA1-223	ENST00000520520		M0R2T5	61 aa		4.28	□□□□□ -1.72
CTNNA1-223	ENST00000520520	CRIPT	Q9P021	101 aa		4.28	□□□□□ -1.72
CTNNA1-223	ENST00000520520	KRTAP13-4	Q3LI77	160 aa		4.27	□□□□□ -1.73
CTNNA1-223	ENST00000520520	KRTAP19-2	Q3LHN2	52 aa		4.26	□□□□□ -1.73
CTNNA1-223	ENST00000520520		P0C880	135 aa		4.25	□□□□□ -1.73
CTNNA1-223	ENST00000520520	SPINT4	Q6UDR6	99 aa		4.23	□□□□□ -1.73
CTNNA1-223	ENST00000520520	KRTAP12-1	P59990	96 aa		4.19	□□□□□ -1.74
CTNNA1-223	ENST00000520520	KRTAP12-2	P59991	146 aa		4.19	□□□□□ -1.74
CTNNA1-223	ENST00000520520	FLG	P20930	4061 aa	Predicted RBP	4.16	□□□□□ -1.74
CTNNA1-223	ENST00000520520		A0A0A0MQY5	61 aa		4.14	□□□□□ -1.75
CTNNA1-223	ENST00000520520		R4GN34	69 aa		4.13	□□□□□ -1.75
CTNNA1-223	ENST00000520520	C10orf95	Q9H7T3	257 aa		4.11	□□□□□ -1.75
CTNNA1-223	ENST00000520520	SSPO	A2VEC9	5147 aa		4.11	□□□□□ -1.75
CTNNA1-223	ENST00000520520	USH2A	O75445	5202 aa		4.1	□□□□□ -1.75
CTNNA1-223	ENST00000520520	LCE1A	Q5T7P2	110 aa		4.03	□□□□□ -1.76
CTNNA1-223	ENST00000520520	PP632	Q6XCG6	107 aa		4.01	□□□□□ -1.77
CTNNA1-223	ENST00000520520	KRTAP9-8	Q9BYQ0	159 aa		4	□□□□□ -1.77
CTNNA1-223	ENST00000520520	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.99	□□□□□ -1.77
CTNNA1-223	ENST00000520520	NDUFAF8	A1L188	74 aa		3.97	□□□□□ -1.77
CTNNA1-223	ENST00000520520	MT2A	P02795	61 aa		3.95	□□□□□ -1.78
CTNNA1-223	ENST00000520520	CAMK2N1	Q7Z7J9	78 aa		3.95	□□□□□ -1.78
CTNNA1-223	ENST00000520520	KRTAP10-10	P60014	251 aa		3.94	□□□□□ -1.78
CTNNA1-223	ENST00000520520	MT1F	P04733	61 aa		3.93	□□□□□ -1.78
CTNNA1-223	ENST00000520520	SYNE2	Q8WXH0	6885 aa	Known RBP	3.91	□□□□□ -1.78
CTNNA1-223	ENST00000520520	MACF1	Q9UPN3	7388 aa	Known RBP	3.91	□□□□□ -1.78
CTNNA1-223	ENST00000520520	KRTAP5-3	Q6L8H2	238 aa		3.91	□□□□□ -1.78
CTNNA1-223	ENST00000520520	PLAC4	Q8WY50	150 aa		3.9	□□□□□ -1.79
CTNNA1-223	ENST00000520520	LUZP6	Q538Z0	58 aa		3.85	□□□□□ -1.79
CTNNA1-223	ENST00000520520	TNP1	P09430	55 aa		3.83	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms